EY688432

Overview
NameEY688432
Unique NameEY688432
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY688432 vs. ExPASy Swiss-Prot
Match: TBA_TETTH (Tubulin alpha chain OS=Tetrahymena thermophila PE=1 SV=1)

HSP 1 Score: 332.798 bits (852), Expect = 1.508e-90
Identity = 165/223 (73.99%), Postives = 175/223 (78.48%), Query Frame = 2 
Query:   92 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPISSGLHICC*PLNRVLSTHSLVEAYGCGLFFSQMRPFYDTCRPSLDIGSP 760
            MRE ISIH+GQ GIQVGNACWEL+CLEHGIQPDGQMPSDKT+GGGDDAFNTFFSETGAGKHVPRAVF+DLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFN+V                 VDYGKKSKLGFT+YP          P N +LSTHSL+E     +        YD CR +LDI  P
Sbjct:    1 MREVISIHVGQGGIQVGNACWELFCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNSVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSILSTHSLLEHTDVAVMLDN-EAIYDICRRNLDIERP 222
[Close]
BLAST of EY688432 vs. ExPASy Swiss-Prot
Match: TBA_TETPY (Tubulin alpha chain OS=Tetrahymena pyriformis PE=3 SV=1)

HSP 1 Score: 332.798 bits (852), Expect = 1.508e-90
Identity = 165/223 (73.99%), Postives = 175/223 (78.48%), Query Frame = 2 
Query:   92 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPISSGLHICC*PLNRVLSTHSLVEAYGCGLFFSQMRPFYDTCRPSLDIGSP 760
            MRE ISIH+GQ GIQVGNACWEL+CLEHGIQPDGQMPSDKT+GGGDDAFNTFFSETGAGKHVPRAVF+DLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFN+V                 VDYGKKSKLGFT+YP          P N +LSTHSL+E     +        YD CR +LDI  P
Sbjct:    1 MREVISIHVGQGGIQVGNACWELFCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNSVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSILSTHSLLEHTDVAVMLDN-EAIYDICRRNLDIERP 222
[Close]
BLAST of EY688432 vs. ExPASy Swiss-Prot
Match: TBA3_MAIZE (Tubulin alpha-3 chain OS=Zea mays GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 330.872 bits (847), Expect = 5.730e-90
Identity = 166/224 (74.11%), Postives = 174/224 (77.68%), Query Frame = 2 
Query:   92 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPISSGLHICC*PLNRVLSTHSLVEAYGCGLFFSQMRPFYDTCRPSLDIGSPN 763
            MRECIS+HIGQAGIQVGNACWELYCLEHGIQPDGQ+P DKT G  DDAF+TFFS+TGAGKHVPRA+FVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV                 V+YGKKSKLGFTVYP          P N VLSTHSL+E     +        YD CR SLDI  PN
Sbjct:    1 MRECISVHIGQAGIQVGNACWELYCLEHGIQPDGQVPGDKTAGHHDDAFSTFFSQTGAGKHVPRAIFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVEYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDN-EAIYDICRRSLDIERPN 223
[Close]
BLAST of EY688432 vs. ExPASy Swiss-Prot
Match: TBA_OXYGR (Tubulin alpha chain OS=Oxytricha granulifera PE=3 SV=1)

HSP 1 Score: 328.176 bits (840), Expect = 3.714e-89
Identity = 165/223 (73.99%), Postives = 173/223 (77.58%), Query Frame = 2 
Query:   92 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPISSGLHICC*PLNRVLSTHSLVEAYGCGLFFSQMRPFYDTCRPSLDIGSP 760
            MRE ISIH+GQAGIQVGNACWEL+CLEHGIQPDGQMPSDKT+GGGDDAFNTFFSETGAGKHVPR VF+DLEPTV DEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLAD CTGLQGFLVFN+V                 VDYGKKSKLGFTVYP          P N VLSTHSL+E     +        YD CR +LDI  P
Sbjct:    1 MREVISIHVGQAGIQVGNACWELFCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRCVFLDLEPTVDDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADQCTGLQGFLVFNSVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDN-EAVYDICRRNLDIERP 222
[Close]
BLAST of EY688432 vs. ExPASy Swiss-Prot
Match: TBA1_STYLE (Tubulin alpha-1 chain OS=Stylonychia lemnae PE=3 SV=2)

HSP 1 Score: 327.405 bits (838), Expect = 6.335e-89
Identity = 164/223 (73.54%), Postives = 173/223 (77.58%), Query Frame = 2 
Query:   92 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPISSGLHICC*PLNRVLSTHSLVEAYGCGLFFSQMRPFYDTCRPSLDIGSP 760
            MRE ISIH+GQAGIQ+GNACWEL+CLEHGIQPDGQMPSDKT+GGGDDAFNTFFSETGA KHVPR VF+DLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLAD CTGLQGFLVFN+V                 VDYGKKSKLGFTVYP          P N VLSTHSL+E     +        YD CR +LDI  P
Sbjct:    1 MREVISIHVGQAGIQIGNACWELFCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAEKHVPRCVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADQCTGLQGFLVFNSVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDN-EAVYDICRRNLDIERP 222
[Close]
BLAST of EY688432 vs. ExPASy Swiss-Prot
Match: TBA3_ARATH (Tubulin alpha-3/alpha-5 chain OS=Arabidopsis thaliana GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 325.865 bits (834), Expect = 1.843e-88
Identity = 165/223 (73.99%), Postives = 171/223 (76.68%), Query Frame = 2 
Query:   92 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPISSGLHICC*PLNRVLSTHSLVEAYGCGLFFSQMRPFYDTCRPSLDIGSP 760
            MRE ISIHIGQAGIQVGN+CWELYCLEHGIQPDG MPSD TVG   DAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYT+GKEIVDLCLDR+RKLADNCTGLQGFLVFNAV                 VDYGKKSKLGFT+YP          P N VLSTHSL+E     +        YD CR SLDI  P
Sbjct:    1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDN-EAIYDICRRSLDIERP 222
[Close]
BLAST of EY688432 vs. ExPASy Swiss-Prot
Match: TBA1_ORYSJ (Tubulin alpha-1 chain OS=Oryza sativa subsp. japonica GN=TUBA1 PE=1 SV=1)

HSP 1 Score: 323.553 bits (828), Expect = 9.147e-88
Identity = 163/223 (73.09%), Postives = 171/223 (76.68%), Query Frame = 2 
Query:   92 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPISSGLHICC*PLNRVLSTHSLVEAYGCGLFFSQMRPFYDTCRPSLDIGSP 760
            MRE ISIHIGQAGIQVGNACWELYCLEHGI+PDG MPSD TVG   DAFNTFFSETGAGKHVPRA+FVDLEPTVIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+GKEIVDLCLDR+RKLADNCTGLQGFLVFNAV                 VDYGKKSKLGFT+YP          P N VLSTHSL+E     +        YD CR SLDI  P
Sbjct:    1 MREIISIHIGQAGIQVGNACWELYCLEHGIEPDGTMPSDTTVGVAHDAFNTFFSETGAGKHVPRAIFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDN-EAIYDICRRSLDIERP 222
[Close]
BLAST of EY688432 vs. ExPASy Swiss-Prot
Match: TBA1_NAEGR (Tubulin alpha-1/2/3 chain OS=Naegleria gruberi GN=TBA1 PE=2 SV=1)

HSP 1 Score: 323.168 bits (827), Expect = 1.195e-87
Identity = 162/223 (72.65%), Postives = 173/223 (77.58%), Query Frame = 2 
Query:   92 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPISSGLHICC*PLNRVLSTHSLVEAYGCGLFFSQMRPFYDTCRPSLDIGSP 760
            MRE ISIHIGQAG+QVGNACWELYCLEHGIQPDG MPSDKT+G  DDAFNTFFSETGAGKHVPRAVF+DLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVF++V                 VDYGKKSKLGFTVYP          P N VLSTH+L+E     +        YD CR SLDI  P
Sbjct:    1 MREVISIHIGQAGVQVGNACWELYCLEHGIQPDGLMPSDKTIGVEDDAFNTFFSETGAGKHVPRAVFLDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFSSVGGGTGSGLGALLLERLSVDYGKKSKLGFTVYPSPQVATAVVEPYNSVLSTHALLEHTDVAVMLDN-EAIYDICRRSLDIQRP 222
[Close]
BLAST of EY688432 vs. ExPASy Swiss-Prot
Match: TBA1C_BOVIN (Tubulin alpha-1C chain OS=Bos taurus GN=TUBA1C PE=1 SV=1)

HSP 1 Score: 322.783 bits (826), Expect = 1.560e-87
Identity = 156/223 (69.96%), Postives = 173/223 (77.58%), Query Frame = 2 
Query:   92 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPISSGLHICC*PLNRVLSTHSLVEAYGCGLFFSQMRPFYDTCRPSLDIGSP 760
            MRECISIH+GQAG+Q+GNACWELYCLEHGIQPDGQMPSDKT+GGGDD+FNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANN+ARGHYTIGKEI+DL LDR+RKLAD CTGLQGFLVF++                  VDYGKKSKL F++YP          P N +L+TH+ +E   C  F       YD CR +LDI  P
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLDRVRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCA-FMVDNEAIYDICRRNLDIERP 222
[Close]
BLAST of EY688432 vs. ExPASy Swiss-Prot
Match: TBA_TORMA (Tubulin alpha chain OS=Torpedo marmorata PE=2 SV=1)

HSP 1 Score: 322.013 bits (824), Expect = 2.661e-87
Identity = 156/223 (69.96%), Postives = 173/223 (77.58%), Query Frame = 2 
Query:   92 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPISSGLHICC*PLNRVLSTHSLVEAYGCGLFFSQMRPFYDTCRPSLDIGSP 760
            MRECISIH+GQAG+Q+GNACWELYCLEHGIQPDGQMPSDKT+GGGDD+FNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+DL LDRIRKLAD CTGLQGFLVF++                  VDYGKKSKL F++YP          P N +L+TH+ +E   C  F       YD CR +LDI  P
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCA-FMVDNEAIYDICRRNLDIERP 222
The following BLAST results are available for this feature:
BLAST of EY688432 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 410
Match NameE-valueIdentityDescription
TBA_TETTH1.508e-9073.99Tubulin alpha chain OS=Tetrahymena thermophila PE=... [more]
TBA_TETPY1.508e-9073.99Tubulin alpha chain OS=Tetrahymena pyriformis PE=3... [more]
TBA3_MAIZE5.730e-9074.11Tubulin alpha-3 chain OS=Zea mays GN=TUBA3 PE=2 SV... [more]
TBA_OXYGR3.714e-8973.99Tubulin alpha chain OS=Oxytricha granulifera PE=3 ... [more]
TBA1_STYLE6.335e-8973.54Tubulin alpha-1 chain OS=Stylonychia lemnae PE=3 S... [more]
TBA3_ARATH1.843e-8873.99Tubulin alpha-3/alpha-5 chain OS=Arabidopsis thali... [more]
TBA1_ORYSJ9.147e-8873.09Tubulin alpha-1 chain OS=Oryza sativa subsp. japon... [more]
TBA1_NAEGR1.195e-8772.65Tubulin alpha-1/2/3 chain OS=Naegleria gruberi GN=... [more]
TBA1C_BOVIN1.560e-8769.96Tubulin alpha-1C chain OS=Bos taurus GN=TUBA1C PE=... [more]
TBA_TORMA2.661e-8769.96Tubulin alpha chain OS=Torpedo marmorata PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-070-F10-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY688432 ID=EY688432; Name=EY688432; organism=Citrus sinensis; type=EST; length=860bp
AAGAGGCGTCTTATAAACCCCTTCGTTTAGATTCAATTACTTCTTCTTTT
GGCTGTGTACCTCGTCGTTTTTCTTCTCTTAATCTGCGAAAATGAGAGAG
TGCATTTCAATCCATATCGGTCAGGCCGGTATCCAGGTCGGAAATGCCTG
CTGGGAACTCTACTGCCTCGAGCACGGCATTCAGCCTGATGGCCAAATGC
CAAGTGATAAGACAGTCGGAGGTGGCGACGATGCTTTCAACACCTTTTTC
AGTGAAACAGGTGCAGGGAAGCACGTGCCTCGTGCTGTCTTTGTTGATCT
TGAGCCCACTGTCATTGATGAAGTGAGGACCGGAACTTACCGCCAGCTCT
TCCACCCTGAGCAGCTCATCAGTGGCAAGGAAGACGCTGCCAACAACTTC
GCCCGTGGCCACTATACCATTGGTAAGGAGATTGTTGATCTCTGCCTTGA
CCGCATCAGGAAGCTGGCTGATAACTGCACTGGTCTCCAGGGATTCCTTG
TTTTCAATGCTGTTGGTGGAGGAACTGGCTCTGGTCTTGGGTCTCTTCTT
CTGGAGAGGTTGTCTGTTGACTATGGAAAGAAGTCAAAGTTGGGCTTCAC
TGTCTACCCCATCTCCTCAGGTCTCCACATCTGTTGTTGACCCTTAAACA
GGGTCCTCTCAACCCACTCCCTGGTGGAAGCATACGGATGTGGGCTGTTC
TTCTCCCAAATGAGGCCATTTTATGACACCTGCCGGCCCTCCCTTGACAT
TGGAAGCCCCAACCAAAACTACCCTCACTAAACTTGGTCCTCAGGTAACT
TCTTCCCAGCACGCCCGCACGCAGAGCTGGGAAGGGGATCTCAATGGAGA
GGGGCACATA
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