EY688432

Overview
NameEY688432
Unique NameEY688432
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY688432 vs. ExPASy Swiss-Prot
Match: TBB2_ANEPH (Tubulin beta-2 chain (Fragment) OS=Anemia phyllitidis GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.941e-25
Identity = 63/175 (36.00%), Postives = 94/175 (53.71%), Query Frame = 2
Query:  239 NTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPISSGLHICC*PLNRVLSTHSLVE-AYGCGLFFSQMRPFYDTCRPSLDIGSP 760
            N +++E   G++VPRAV +DLEP  +D VR+G Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD +RK A+NC  LQGF V +++                  +Y  +    F+V+P          P N  LS H LVE A  C +  ++    YD C  +L + +P
Sbjct:   16 NVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMXTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNE--ALYDICFRTLKLVTP 188          
BLAST of EY688432 vs. ExPASy Swiss-Prot
Match: TBB4Q_HUMAN (Putative tubulin beta-4q chain OS=Homo sapiens GN=TUBB4Q PE=5 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.428e-25
Identity = 70/223 (31.39%), Postives = 105/223 (47.09%), Query Frame = 2
Query:   92 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPISSGLHICC*PLNRVLSTHSLVEAYGCGLFFSQMRPFYDTCRPSLDIGSP 760
            MRE +    GQ G Q+G   WE+   EH I   G    D  +    +  N    E   G++VPRAV VDLEP  +D VR+G + ++F P+  IS +  A NN+A+G YT G E+++  +D +RK A++C  LQGF + +++                  +Y  +    F++ P          P N  LS H L+E      F       YD C  +L + +P
Sbjct:    1 MREIVLTQTGQCGNQIGAKFWEVISDEHAIDSAGTYHGDSHLQL--ERINVHHHEASGGRYVPRAVLVDLEPGTMDSVRSGPFAEVFRPDNFISRQCGAGNNWAKGRYTEGAELMESVMDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRIINTFSILPSPKVSDTVVEPYNATLSVHQLIE-NADETFCIDNEALYDICSRTLKLPTP 220          
BLAST of EY688432 vs. ExPASy Swiss-Prot
Match: TBG_CHLRE (Tubulin gamma chain OS=Chlamydomonas reinhardtii GN=TUBG PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.889e-23
Identity = 62/177 (35.03%), Postives = 95/177 (53.67%), Query Frame = 2
Query:   95 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPISS 619
            RE I++ +GQ G QVG+  W   C EHGI  DG++    T+GG  D  + FF +    +++PRA+ +DLEP VI+ ++T   R LF+PE +   KE   A NN+A G YT G+ + +  LD I + A+ C  L+GF + +++                   Y KK    ++V+P  S
Sbjct:    3 REIINLQVGQCGNQVGSEFWRKLCQEHGIAKDGRLEDFATLGG--DRKDVFFYQADDEQYIPRAILLDLEPRVINGIQTSDLRNLFNPENIFISKEGGGAGNNWASG-YTQGEAVQETLLDMIDREAEYCDSLEGFNMCHSIAGGTGSGMGSYMLELISDRYSKKLIQTYSVFPNQS 176          
BLAST of EY688432 vs. ExPASy Swiss-Prot
Match: TBB2_SUIBO (Tubulin beta-2 chain OS=Suillus bovinus GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.295e-22
Identity = 70/224 (31.25%), Postives = 104/224 (46.43%), Query Frame = 2
Query:   95 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMP-SDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPISSGLHICC*PLNRVLSTHSLVEAYGCGLFFS-QMRPFYDTCRPSLDIGSP 760
            RE ++I  GQAG QVG A W +   EHG+   G    +D         + T    +G  K+VPR+V VDLE  V + +R+G   QLF P+   +    A NN+A+G+YT G E++D  LD +R+  +    LQGF + +++                  +Y  +    F++ P  +       P N +LS H LV+   C L         YD    +L I SP
Sbjct:    3 REIVNIQAGQAGNQVGEAFWRMLLAEHGLDDAGMYKGNDPQQIARAGVYFTQVDSSGPTKYVPRSVQVDLESGVCNRLRSGPLGQLFRPDTYFTSDSGAGNNWAKGYYTEGAELIDGILDIVRRQCEATEALQGFQMIHSLGGGTGAGLGSLLLSKLREEYPDRMLSTFSILPAPNVSETVVEPYNSLLSIHQLVD--NCDLTICIDNEALYDIAVRTLKIKSP 224          
BLAST of EY688432 vs. ExPASy Swiss-Prot
Match: TBG_NEUCR (Tubulin gamma chain OS=Neurospora crassa GN=tub-4 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.113e-22
Identity = 60/198 (30.30%), Postives = 104/198 (52.53%), Query Frame = 2
Query:   95 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYP-ISSGLHICC*PLNRVLSTHSLVE 679
            RE I+I  GQ G  +G+  W+  CLEHGI  DG +    T GG  D  + FF ++   +++PR++ +DLEP VI+ ++TG YR +++PE    GK    A NN+  G+ T G+++ +  ++ I + AD    L+GF++ +++                   + KK    ++V+P  +S   +   P N +L+   L +
Sbjct:    3 REIITIQAGQCGNSIGSQFWQQLCLEHGISQDGTIEDFATEGG--DRKDVFFYQSDDTRYIPRSILIDLEPRVINTIQTGPYRNIYNPENFYVGKSGLGAGNNWGDGYQT-GEQVHEEIMEMIEREADGSDSLEGFMMLHSIAGGTGSGLGSFLLERLNDRFPKKIIQTYSVFPDTTSAGDVVVHPYNSLLAMRRLTQ 197          
BLAST of EY688432 vs. ExPASy Swiss-Prot
Match: TBG_EMENI (Tubulin gamma chain OS=Emericella nidulans GN=mipA PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 8.722e-22
Identity = 58/197 (29.44%), Postives = 100/197 (50.76%), Query Frame = 2
Query:   95 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPISSGLHICC*PLNRVLSTHSLVE 679
            RE I+I  GQ G  VG+  W+  CLEHGI  DG +    T GG  D  + FF ++   +++PRA+ +DLEP V++ +++G Y+ +++PE    G++   A NN+  G Y  G+ + +   D I + AD    L+GF+  +++                   + KK    ++V+P +    +   P N +L+   L +
Sbjct:    3 REIITIQAGQCGNNVGSQFWQQLCLEHGISQDGNLEEFATEGG--DRKDVFFYQSDDTRYIPRAILLDLEPRVLNGIQSGPYKNIYNPENFFIGQQGIGAGNNWGAG-YAAGEVVQEEVFDMIDREADGSDSLEGFMFLHSIAGGTGSGLGSFLLERMNDRFPKKLIQTYSVFPDTQAADVVVNPYNSLLAMRRLTQ 196          
BLAST of EY688432 vs. ExPASy Swiss-Prot
Match: TBG_EUPAE (Tubulin gamma chain OS=Euplotes aediculatus PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.314e-21
Identity = 64/201 (31.84%), Postives = 102/201 (50.75%), Query Frame = 2
Query:   95 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPISSGLHICC*PLNRVLSTHSLVEAYGC 691
            RE I+  +GQ G Q+G   W+  C+EHGI P+G +  +     G+D  + FF +     +VPRAV +DLEP VI+ ++  TY  L++PE +   K    A NN+ RG YT  +++ D  L+ I + AD    L+GF++ +++                   Y KK    ++V+PI + + +   P N +LS   L     C
Sbjct:    3 REIITCQVGQCGNQIGMEFWKQLCMEHGINPEGIL--EDFAVNGEDRKDVFFYQADDEHYVPRAVLIDLEPRVINCIQKSTYSSLYNPENIYIAKHGGGAGNNWGRG-YTDAEKVQDEILEMIDREADGSDSLEGFVLTHSIAGGTGSGFGSYLLERINDHYPKKLIQTYSVFPIENDVVVQ--PYNCLLSIKRLTLNADC 198          
BLAST of EY688432 vs. ExPASy Swiss-Prot
Match: TBB1_AVESA (Tubulin beta-1 chain (Fragment) OS=Avena sativa GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.314e-21
Identity = 59/161 (36.65%), Postives = 85/161 (52.80%), Query Frame = 2
Query:  284 AVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPISSGLHICC*PLNRVLSTHSLVE-AYGCGLFFSQMRPFYDTCRPSLDIGSPN 763
            AV +DLEP  +D VRTG Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD +RK A+NC  LQGF V +++                  +Y  +  L F+V+P          P N  LS H LVE A  C +  ++    YD C  +L + +P+
Sbjct:    1 AVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNE--ALYDICFRTLKLTTPS 159          
BLAST of EY688432 vs. ExPASy Swiss-Prot
Match: TBG_SCHPO (Tubulin gamma chain OS=Schizosaccharomyces pombe GN=tug1 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.329e-21
Identity = 62/196 (31.63%), Postives = 102/196 (52.04%), Query Frame = 2
Query:   95 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPISSGL-HICC*PLNRVLSTHSL 673
            RE I++  GQ G Q+G+  W+  CLEHGI PDG + S  T   G D  + FF ++   +++PRA+ +DLEP V++ + + TY  L++PE ++  K    A NN+A G Y+  + I +  +D I + AD    L+GF + +++                   Y KK    ++V+P S  +  +   P N +L+   L
Sbjct:    3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQSDDTRYIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDMIDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQSVSDVVVQPYNSLLALKRL 195          
BLAST of EY688432 vs. ExPASy Swiss-Prot
Match: TBG2_EUPOC (Tubulin gamma-2 chain OS=Euplotes octocarinatus PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.384e-21
Identity = 63/201 (31.34%), Postives = 101/201 (50.25%), Query Frame = 2
Query:   95 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPISSGLHICC*PLNRVLSTHSLVEAYGC 691
            RE I+  +GQ G Q+G   W+  C+EHGI P+G +  +     G+D  + FF +     +VPRAV +DLEP VI+ ++   Y  L++PE +   K    A NN+ RG YT  +++ D  L+ I + AD    L+GF++ +++                   Y KK    ++V+PI + + +   P N +LS   L     C
Sbjct:    3 REIITCQVGQCGNQIGMEFWKQLCMEHGINPEGIL--EDFAVNGEDRKDVFFYQADDEHYVPRAVLIDLEPRVINGIQKSAYSSLYNPENIYIAKHGGGAGNNWGRG-YTDAEKVQDEILEMIDREADGSDSLEGFVLTHSIAGGTGSGFGSYLLERLNDHYPKKLIQTYSVFPIENDVVVQ--PYNCLLSIKRLTLNADC 198          
The following BLAST results are available for this feature:
BLAST of EY688432 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 410
Match NameE-valueIdentityDescription
TBB2_ANEPH4.941e-2536.00Tubulin beta-2 chain (Fragment) OS=Anemia phylliti... [more]
TBB4Q_HUMAN8.428e-2531.39Putative tubulin beta-4q chain OS=Homo sapiens GN=... [more]
TBG_CHLRE7.889e-2335.03Tubulin gamma chain OS=Chlamydomonas reinhardtii G... [more]
TBB2_SUIBO2.295e-2231.25Tubulin beta-2 chain OS=Suillus bovinus GN=TUBB2 P... [more]
TBG_NEUCR5.113e-2230.30Tubulin gamma chain OS=Neurospora crassa GN=tub-4 ... [more]
TBG_EMENI8.722e-2229.44Tubulin gamma chain OS=Emericella nidulans GN=mipA... [more]
TBG_EUPAE3.314e-2131.84Tubulin gamma chain OS=Euplotes aediculatus PE=2 S... [more]
TBB1_AVESA3.314e-2136.65Tubulin beta-1 chain (Fragment) OS=Avena sativa GN... [more]
TBG_SCHPO4.329e-2131.63Tubulin gamma chain OS=Schizosaccharomyces pombe G... [more]
TBG2_EUPOC7.384e-2131.34Tubulin gamma-2 chain OS=Euplotes octocarinatus PE... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-070-F10-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY688432 ID=EY688432; Name=EY688432; organism=Citrus sinensis; type=EST; length=860bp
AAGAGGCGTCTTATAAACCCCTTCGTTTAGATTCAATTACTTCTTCTTTT
GGCTGTGTACCTCGTCGTTTTTCTTCTCTTAATCTGCGAAAATGAGAGAG
TGCATTTCAATCCATATCGGTCAGGCCGGTATCCAGGTCGGAAATGCCTG
CTGGGAACTCTACTGCCTCGAGCACGGCATTCAGCCTGATGGCCAAATGC
CAAGTGATAAGACAGTCGGAGGTGGCGACGATGCTTTCAACACCTTTTTC
AGTGAAACAGGTGCAGGGAAGCACGTGCCTCGTGCTGTCTTTGTTGATCT
TGAGCCCACTGTCATTGATGAAGTGAGGACCGGAACTTACCGCCAGCTCT
TCCACCCTGAGCAGCTCATCAGTGGCAAGGAAGACGCTGCCAACAACTTC
GCCCGTGGCCACTATACCATTGGTAAGGAGATTGTTGATCTCTGCCTTGA
CCGCATCAGGAAGCTGGCTGATAACTGCACTGGTCTCCAGGGATTCCTTG
TTTTCAATGCTGTTGGTGGAGGAACTGGCTCTGGTCTTGGGTCTCTTCTT
CTGGAGAGGTTGTCTGTTGACTATGGAAAGAAGTCAAAGTTGGGCTTCAC
TGTCTACCCCATCTCCTCAGGTCTCCACATCTGTTGTTGACCCTTAAACA
GGGTCCTCTCAACCCACTCCCTGGTGGAAGCATACGGATGTGGGCTGTTC
TTCTCCCAAATGAGGCCATTTTATGACACCTGCCGGCCCTCCCTTGACAT
TGGAAGCCCCAACCAAAACTACCCTCACTAAACTTGGTCCTCAGGTAACT
TCTTCCCAGCACGCCCGCACGCAGAGCTGGGAAGGGGATCTCAATGGAGA
GGGGCACATA
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