EY688432

Overview
NameEY688432
Unique NameEY688432
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY688432 vs. ExPASy Swiss-Prot
Match: TBG_RETFI (Tubulin gamma chain OS=Reticulomyxa filosa PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.593e-15
Identity = 59/197 (29.95%), Postives = 95/197 (48.22%), Query Frame = 2
Query:   95 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYP-ISSGLHICC*PLNRVLSTHSLV 676
            RE I++ +GQ G Q+G   W     EHGI PDG +    T G   D  + FF +     ++PRA+ +DLEP VI+ ++   ++ L++PE +    +   A NN+A G YT   E  +  +D I +  DN   L+GF++ +++                   Y KK    ++V+P  S    +   P N VL+   L+
Sbjct:    3 REIITLQVGQCGNQIGTEFWGRLIAEHGIGPDGIVKEFATEG--TDRKDVFFYQADDQHYIPRALLIDLEPRVINSLQESEFKNLWNPENVYIDSQGGGAGNNWAVG-YTHATEKYEHIMDMIDR-EDNSDSLEGFVLTHSIAGGTGSGFGSHMLEQLTDRYPKKIIQTYSVFPNDSERSSVVVHPYNSVLALKRLI 195          
BLAST of EY688432 vs. ExPASy Swiss-Prot
Match: TBG_CANGA (Tubulin gamma chain OS=Candida glabrata GN=TUB4 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.054e-15
Identity = 64/230 (27.83%), Postives = 98/230 (42.61%), Query Frame = 2
Query:   98 ECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMP-SDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPISSGLHICC*PLNRVLSTHSLVEAYGCGLFFSQMRPFYDTCRPSLDIGSPNQNYPH 778
            E I+I +GQ G  VG   W     EHGI  DG    +D      +D  N FF +    ++VPRA+ +DLEP  + +V++ ++  LF+P       E   A N+++ G Y  G +  D  +D I +  D+    +GF + ++V                   Y K     ++V+P S    +   P N VL+   L E     + F        T R   D   PN +Y H
Sbjct:    4 EIITIQVGQCGNHVGKYFWNQLLKEHGIDKDGYSKYNDDLTHIREDDTNPFFKQITNNRYVPRAIMIDLEPAAVTDVQS-SFNDLFNPRNTWVSSEGLGAGNSWSTG-YDRGVQNQDRIMDIIDRELDSTDNFEGFQLLHSVAGGTGSGLGSSLLEALTDRYSKSFITTYSVFP-SKQSEVVVGPYNTVLTLRRLCEDADASIIFDNNALLNLTARTFRD---PNTSYEH 227          
BLAST of EY688432 vs. ExPASy Swiss-Prot
Match: TBG_YEAST (Tubulin gamma chain OS=Saccharomyces cerevisiae GN=TUB4 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.125e-14
Identity = 61/198 (30.81%), Postives = 86/198 (43.43%), Query Frame = 2
Query:   98 ECISIHIGQAGIQVGNACWELYCLEHGIQPDG--QMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQ--LISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPISSGLHICC*PLNRVLSTHSLVE 679
            E I++  GQ G  VG   W     EH I  DG  Q+P   T    DD    FF E    K  PRA+ +D EP+VI +V   T+R  F P    + S    A N++A G Y IG    D  L++I K  D+    +GF + ++V                   Y KK    ++V+P  S   +     N +L+   L+E
Sbjct:    4 EIITLQAGQCGNHVGKFLWSQLAKEHAIGTDGLSQLPDSSTER--DDDTKPFFRENSRNKFTPRAIMMDSEPSVIADVE-NTFRGFFDPRNTWVASDGASAGNSWANG-YDIGTRNQDDILNKIDKEIDSTDNFEGFQLLHSVAGGTGSGLGSNLLEALCDRYPKKILTTYSVFPARSS-EVVVQSYNTILALRRLIE 196          
BLAST of EY688432 vs. ExPASy Swiss-Prot
Match: TBG_ASHGO (Tubulin gamma chain OS=Ashbya gossypii GN=TUB4 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.544e-13
Identity = 62/206 (30.10%), Postives = 90/206 (43.69%), Query Frame = 2
Query:   98 ECISIHIGQAGIQVGNACWELYCLEHGIQPDGQM--PSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKED--AANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPISSGLHICC*PLNRVLSTHSLVEAYGCGLFF 703
            E ISI +GQ G QVG   W     EHGI  DGQ   P D  V   DD  N FF +    +  PRA+  DLEP+ I +V+   +   F+   +   KE+  A N ++ G Y  G E  D  ++ I K  D     +GF + ++V                   Y KK    ++V+P S    +   P N +L+   L++     + F
Sbjct:    4 EIISIQVGQCGNQVGKQFWGQLAREHGIGVDGQSLHPEDANVVREDDT-NVFFRQNDHNRFTPRALLYDLEPSAIGDVQ-NCFPGFFNERNVWISKEELGAGNTWSIG-YDYGLEKQDEFMNMIDKEIDATGNFEGFQLIHSVAGGTGSGLGSNLLEALSDRYHKKIVSTYSVFP-SRESEVVVQPYNTILTLRRLIDNSDASVLF 205          
BLAST of EY688432 vs. ExPASy Swiss-Prot
Match: TBB_HALDI (Tubulin beta chain (Fragment) OS=Haliotis discus PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.544e-13
Identity = 46/146 (31.51%), Postives = 69/146 (47.26%), Query Frame = 2
Query:  323 VRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPISSGLHICC*PLNRVLSTHSLVEAYGCGLFFSQMRPFYDTCRPSLDIGSP 760
            VR+G + Q+F P+  + G+  A NN+A+GHYT G E+VD  LD +RK A++C  LQGF + +++                  +Y  +    F+V P          P N  LS H LVE      +       YD C  +L + +P
Sbjct:    2 VRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTD-ETYCIDNEALYDICFRTLKLTTP 146          
BLAST of EY688432 vs. ExPASy Swiss-Prot
Match: TBG_CAEEL (Tubulin gamma chain OS=Caenorhabditis elegans GN=tbg-1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.812e-12
Identity = 56/196 (28.57%), Postives = 92/196 (46.94%), Query Frame = 2
Query:  104 ISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVID-EVRTGTYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPIS-SGLHICC*PLNRVLSTHSLVE 679
            +++H+GQ G Q+  A W+    EHGI   GQ   +  +   +D  +  F +     +VPRAV VDLEP VI+  +++  +  LF+ + +        A NN+A G Y  G+E+ +  +D I + A+N   L G L  ++V                   + KK    ++V+  S +   +   P N VLS   L+E
Sbjct:    8 MTVHVGQCGNQLAQAFWKSMVDEHGINERGQTTHEDDM---NDKKDLLFYQADDDHYVPRAVLVDLEPRVINGMMQSPNFSNLFNTDNIFMSDHGGGAGNNWASG-YCQGQEVQEKIMDIIIREAENTNNLDGILFTHSVSGGTGSGTGSLLLERLREAFPKKVIQTYSVFANSDTSTDVVVHPYNWVLSMQRLIE 199          
BLAST of EY688432 vs. ExPASy Swiss-Prot
Match: TBE_HUMAN (Tubulin epsilon chain OS=Homo sapiens GN=TUBE1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.812e-12
Identity = 55/216 (25.46%), Postives = 93/216 (43.06%), Query Frame = 2
Query:   92 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSET-----GAGKHVP---------RAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPISSGLHICC*PLNRVLSTHSLVEAYGCGL 697
            M + + + +GQ G Q+G   W+L   EH         +    G  D+A ++FF        G G  +          RAV +D+E  V++E+  G  R +F  +QLI+    + NN+A GH   G    D  L++ RK A++C  LQ F + +++                  ++ +  +   ++YP S    +   P N +L+   L E   C L
Sbjct:    1 MTQSVVVQVGQCGNQIGCCFWDLALREHA--------AVNQKGIYDEAISSFFRNVDTRVVGDGGSISKGKICSLKARAVLIDMEEGVVNEILQGPLRDVFDTKQLITDISGSGNNWAVGHKVFGSLYQDQILEKFRKSAEHCDCLQCFFIIHSMGGGTGSGLGTFLLKVLEDEFPEVYRFVTSIYP-SGEDDVITSPYNSILAMKELNEHADCVL 207          
BLAST of EY688432 vs. ExPASy Swiss-Prot
Match: TBE_MOUSE (Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.673e-12
Identity = 57/216 (26.39%), Postives = 93/216 (43.06%), Query Frame = 2
Query:   92 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSET-----GAGKHVP---------RAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPISSGLHICC*PLNRVLSTHSLVEAYGCGL 697
            M + + + +GQ G Q+G   W+L   EH         +    G  DDA ++FF        G G  +          RAV +D+E  V++E+  G  R +F  +QLI+    + NN+A GH   G    +  L+++RK A+ C  LQ F + +++                  ++ +  +    VYP SS   +   P N +L+   L E   C L
Sbjct:    1 MTQSVVVQVGQCGNQIGCCFWDLALREHA--------AVNQKGIYDDAISSFFRNVDTRAVGDGGSISKGRISSLKARAVLIDMEEGVVNEILQGPLRDVFDSKQLITDISGSGNNWAVGHKVFGCLYREQILEKLRKSAEQCDCLQCFFIIHSMGGGTGSGLGTFLLKVLEDEFPEVYRFVTAVYP-SSEDDVITSPYNSMLAMKELNEHADCVL 207          
BLAST of EY688432 vs. ExPASy Swiss-Prot
Match: TBA8_CHICK (Tubulin alpha-8 chain (Fragment) OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.823e-11
Identity = 38/97 (39.18%), Postives = 47/97 (48.45%), Query Frame = 2
Query:  470 DNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPISSGLHICC*PLNRVLSTHSLVEAYGCGLFFSQMRPFYDTCRPSLDIGSP 760
            D CTGLQGFL+F++                  VDYGKKSKL F +YP          P N +L+TH+ +E   C  F       YD CR +LDI  P
Sbjct:    2 DQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEQSDCA-FMVDNEAIYDICRRNLDIERP 97          
BLAST of EY688432 vs. ExPASy Swiss-Prot
Match: YI016_HUMAN (Putative tubulin beta chain-like protein ENSP00000290377 OS=Homo sapiens PE=5 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 4.061e-11
Identity = 42/149 (28.19%), Postives = 68/149 (45.64%), Query Frame = 2
Query:  314 IDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPISSGLHICC*PLNRVLSTHSLVEAYGCGLFFSQMRPFYDTCRPSLDIGSP 760
            +D VR+G + Q+  P+  I G+  A NN+A+G YT G E+ +  +D +RK A++C  LQGF + +++                  +Y  +    F++ P          P N  LS H L+E      F       YD C  +L + +P
Sbjct:    1 MDSVRSGPFGQVLRPDNFIFGQCGAGNNWAKGRYTEGAELTESVMDVVRKEAESCDCLQGFQLTHSLGGGTGSGMVTLLISKIREEYPDRIINTFSILPSPKVSDTVVEPYNATLSVHQLIE-NADETFCIDNEALYDICSKTLKLPTP 148          
The following BLAST results are available for this feature:
BLAST of EY688432 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 410
Match NameE-valueIdentityDescription
TBG_RETFI1.593e-1529.95Tubulin gamma chain OS=Reticulomyxa filosa PE=2 SV... [more]
TBG_CANGA6.054e-1527.83Tubulin gamma chain OS=Candida glabrata GN=TUB4 PE... [more]
TBG_YEAST5.125e-1430.81Tubulin gamma chain OS=Saccharomyces cerevisiae GN... [more]
TBG_ASHGO2.544e-1330.10Tubulin gamma chain OS=Ashbya gossypii GN=TUB4 PE=... [more]
TBB_HALDI2.544e-1331.51Tubulin beta chain (Fragment) OS=Haliotis discus P... [more]
TBG_CAEEL2.812e-1228.57Tubulin gamma chain OS=Caenorhabditis elegans GN=t... [more]
TBE_HUMAN2.812e-1225.46Tubulin epsilon chain OS=Homo sapiens GN=TUBE1 PE=... [more]
TBE_MOUSE3.673e-1226.39Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=... [more]
TBA8_CHICK1.823e-1139.18Tubulin alpha-8 chain (Fragment) OS=Gallus gallus ... [more]
YI016_HUMAN4.061e-1128.19Putative tubulin beta chain-like protein ENSP00000... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-070-F10-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY688432 ID=EY688432; Name=EY688432; organism=Citrus sinensis; type=EST; length=860bp
AAGAGGCGTCTTATAAACCCCTTCGTTTAGATTCAATTACTTCTTCTTTT
GGCTGTGTACCTCGTCGTTTTTCTTCTCTTAATCTGCGAAAATGAGAGAG
TGCATTTCAATCCATATCGGTCAGGCCGGTATCCAGGTCGGAAATGCCTG
CTGGGAACTCTACTGCCTCGAGCACGGCATTCAGCCTGATGGCCAAATGC
CAAGTGATAAGACAGTCGGAGGTGGCGACGATGCTTTCAACACCTTTTTC
AGTGAAACAGGTGCAGGGAAGCACGTGCCTCGTGCTGTCTTTGTTGATCT
TGAGCCCACTGTCATTGATGAAGTGAGGACCGGAACTTACCGCCAGCTCT
TCCACCCTGAGCAGCTCATCAGTGGCAAGGAAGACGCTGCCAACAACTTC
GCCCGTGGCCACTATACCATTGGTAAGGAGATTGTTGATCTCTGCCTTGA
CCGCATCAGGAAGCTGGCTGATAACTGCACTGGTCTCCAGGGATTCCTTG
TTTTCAATGCTGTTGGTGGAGGAACTGGCTCTGGTCTTGGGTCTCTTCTT
CTGGAGAGGTTGTCTGTTGACTATGGAAAGAAGTCAAAGTTGGGCTTCAC
TGTCTACCCCATCTCCTCAGGTCTCCACATCTGTTGTTGACCCTTAAACA
GGGTCCTCTCAACCCACTCCCTGGTGGAAGCATACGGATGTGGGCTGTTC
TTCTCCCAAATGAGGCCATTTTATGACACCTGCCGGCCCTCCCTTGACAT
TGGAAGCCCCAACCAAAACTACCCTCACTAAACTTGGTCCTCAGGTAACT
TCTTCCCAGCACGCCCGCACGCAGAGCTGGGAAGGGGATCTCAATGGAGA
GGGGCACATA
back to top