EY688432 | Citrus Genome Database

Overview


Name	EY688432
Unique Name	EY688432
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	860

Libraries


Library Name	Type
Sweet orange bark, greenhouse plant	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY688432 vs. ExPASy Swiss-Prot
Match: TBA3_BOVIN (Tubulin alpha-3 chain OS=Bos taurus GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 320.087 bits (819), Expect = 1.011e-86
Identity = 155/223 (69.51%), Postives = 172/223 (77.13%), Query Frame = 2

Query:   92 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPISSGLHICC*PLNRVLSTHSLVEAYGCGLFFSQMRPFYDTCRPSLDIGSP 760
            MRECISIH+GQAG+Q+GNACWELYCLEHGIQPDGQMPSDKT+GGGDD+FNTFFSETGAGKHVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYTIGKEIVDL LDRIRKLAD CTGLQGFL+F++                  VDYGKKSKL F +YP          P N +L+TH+ +E   C  F       YD CR +LDI  P
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCA-FMVDNEAIYDICRRNLDIERP 222

[Close]

BLAST of EY688432 vs. ExPASy Swiss-Prot
Match: TBA3C_HUMAN (Tubulin alpha-3C/D chain OS=Homo sapiens GN=TUBA3C PE=1 SV=3)

HSP 1 Score: 320.087 bits (819), Expect = 1.011e-86
Identity = 155/223 (69.51%), Postives = 172/223 (77.13%), Query Frame = 2

Query:   92 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPISSGLHICC*PLNRVLSTHSLVEAYGCGLFFSQMRPFYDTCRPSLDIGSP 760
            MRECISIH+GQAG+Q+GNACWELYCLEHGIQPDGQMPSDKT+GGGDD+FNTFFSETGAGKHVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYTIGKEIVDL LDRIRKLAD CTGLQGFL+F++                  VDYGKKSKL F +YP          P N +L+TH+ +E   C  F       YD CR +LDI  P
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCA-FMVDNEAIYDICRRNLDIERP 222

[Close]

BLAST of EY688432 vs. ExPASy Swiss-Prot
Match: TBAT_ONCMY (Tubulin alpha chain, testis-specific OS=Oncorhynchus mykiss PE=2 SV=1)

HSP 1 Score: 319.701 bits (818), Expect = 1.321e-86
Identity = 153/223 (68.61%), Postives = 172/223 (77.13%), Query Frame = 2

Query:   92 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPISSGLHICC*PLNRVLSTHSLVEAYGCGLFFSQMRPFYDTCRPSLDIGSP 760
            MRECISIH+GQAG+Q+GNACWELYCLEHGIQPDGQMPSDKT+GGGDD+FNTFFSETGAGKHVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYTIGKEIVDL LDR+RKL+D CTGLQGFL+F++                  VDYGKKSKL F +YP          P N +L+TH+ +E   C  F       YD CR +LDI  P
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRVRKLSDQCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCA-FMVDNEAIYDICRRNLDIERP 222

[Close]

BLAST of EY688432 vs. ExPASy Swiss-Prot
Match: TBA1A_PIG (Tubulin alpha-1A chain OS=Sus scrofa GN=TUBA1A PE=1 SV=1)

HSP 1 Score: 319.701 bits (818), Expect = 1.321e-86
Identity = 155/223 (69.51%), Postives = 172/223 (77.13%), Query Frame = 2

Query:   92 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPISSGLHICC*PLNRVLSTHSLVEAYGCGLFFSQMRPFYDTCRPSLDIGSP 760
            MRECISIH+GQAG+Q+GNACWELYCLEHGIQPDGQMPSDKT+GGGDD+FNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+DL LDRIRKLAD CTGLQGF VF++                  VDYGKKSKL F++YP          P N +L+TH+ +E   C  F       YD CR +LDI  P
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCA-FMVDNEAIYDICRRNLDIERP 222

[Close]

BLAST of EY688432 vs. ExPASy Swiss-Prot
Match: TBA2_PATVU (Tubulin alpha-2/alpha-4 chain OS=Patella vulgata GN=TUB2 PE=2 SV=1)

HSP 1 Score: 319.316 bits (817), Expect = 1.725e-86
Identity = 153/223 (68.61%), Postives = 172/223 (77.13%), Query Frame = 2

Query:   92 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPISSGLHICC*PLNRVLSTHSLVEAYGCGLFFSQMRPFYDTCRPSLDIGSP 760
            MRECIS+HIGQAG+Q+GNACWELYCLEHGIQPDGQMPSDKT+GGGDD+FNTFFSETGAGKHVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYT+GKEI+DL LDRIRKLAD CTGLQGFL+F++                  VDYGKKSKL F +YP          P N +L+TH+ +E   C  F       YD CR +LDI  P
Sbjct:    1 MRECISVHIGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEIIDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFSSLLMERLSVDYGKKSKLEFAIYPAPQISTAVVEPYNSILTTHTTLEHSDCA-FMVDNEAIYDICRRNLDIERP 222

[Close]

BLAST of EY688432 vs. ExPASy Swiss-Prot
Match: TBA1_HORVU (Tubulin alpha-1 chain OS=Hordeum vulgare GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 319.316 bits (817), Expect = 1.725e-86
Identity = 162/223 (72.65%), Postives = 168/223 (75.34%), Query Frame = 2

Query:   92 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPISSGLHICC*PLNRVLSTHSLVEAYGCGLFFSQMRPFYDTCRPSLDIGSP 760
            MRE ISIHIGQAGIQVGNACWELYCLEHGI  DG MPSD TVG   DAFNTFFSETGAGKHVPRA+FVDLEPTVIDEVRTG YRQLFHPEQLISGKEDAANNFARGHYT+GKEIVDLCLDR+RKLADNCTGLQGFLVFNAV                 VDYGKKSKLGFT+YP          P N VLSTHSL+E     +        YD CR SLDI  P
Sbjct:    1 MREIISIHIGQAGIQVGNACWELYCLEHGINQDGTMPSDTTVGVAHDAFNTFFSETGAGKHVPRAIFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDN-EAIYDICRRSLDIERP 222

[Close]

BLAST of EY688432 vs. ExPASy Swiss-Prot
Match: TBA_BOMMO (Tubulin alpha chain OS=Bombyx mori PE=2 SV=1)

HSP 1 Score: 318.546 bits (815), Expect = 2.943e-86
Identity = 152/223 (68.16%), Postives = 172/223 (77.13%), Query Frame = 2

Query:   92 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPISSGLHICC*PLNRVLSTHSLVEAYGCGLFFSQMRPFYDTCRPSLDIGSP 760
            MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMP+DKT+GGGDD+FNTFFSETGAGKHVPRA+FVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYTIGKEIVDL LDRIRKLAD CTGLQGFL+F++                  VDYGKKSKL F +YP          P N +L+TH+ +E   C  F       YD CR +LDI  P
Sbjct:    1 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRALFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCA-FMVDNEAIYDICRRNLDIEPP 222

[Close]

BLAST of EY688432 vs. ExPASy Swiss-Prot
Match: TBA_TOXGO (Tubulin alpha chain OS=Toxoplasma gondii PE=3 SV=1)

HSP 1 Score: 318.161 bits (814), Expect = 3.843e-86
Identity = 159/223 (71.30%), Postives = 170/223 (76.23%), Query Frame = 2

Query:   92 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPISSGLHICC*PLNRVLSTHSLVEAYGCGLFFSQMRPFYDTCRPSLDIGSP 760
            MRE ISIH+GQAGIQ+GNACWEL+CLEHGIQPDGQMPSDKT+GGGDDAFNTFFSETGAGKHVPR VF+DLEPTV+DEVRTGTYR LFHPEQLISGKEDAANNFARGHYTIGKEIVDL LDRIRKLADNCTGLQGFL+FNAV                 VDYGKKSKL F  +P          P N VLSTHSL+E     +        YD CR +LDI  P
Sbjct:    1 MREVISIHVGQAGIQIGNACWELFCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRCVFLDLEPTVVDEVRTGTYRHLFHPEQLISGKEDAANNFARGHYTIGKEIVDLSLDRIRKLADNCTGLQGFLMFNAVGGGTGSGLGCLLLERLSVDYGKKSKLNFCSWPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDN-EAIYDICRRNLDIERP 222

[Close]

BLAST of EY688432 vs. ExPASy Swiss-Prot
Match: TBA_NEOCA (Tubulin alpha chain OS=Neospora caninum GN=TUBA PE=2 SV=1)

HSP 1 Score: 318.161 bits (814), Expect = 3.843e-86
Identity = 159/223 (71.30%), Postives = 170/223 (76.23%), Query Frame = 2

Query:   92 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPISSGLHICC*PLNRVLSTHSLVEAYGCGLFFSQMRPFYDTCRPSLDIGSP 760
            MRE ISIH+GQAGIQ+GNACWEL+CLEHGIQPDGQMPSDKT+GGGDDAFNTFFSETGAGKHVPR VF+DLEPTV+DEVRTGTYR LFHPEQLISGKEDAANNFARGHYTIGKEIVDL LDRIRKLADNCTGLQGFL+FNAV                 VDYGKKSKL F  +P          P N VLSTHSL+E     +        YD CR +LDI  P
Sbjct:    1 MREVISIHVGQAGIQIGNACWELFCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRCVFLDLEPTVVDEVRTGTYRHLFHPEQLISGKEDAANNFARGHYTIGKEIVDLSLDRIRKLADNCTGLQGFLMFNAVGGGTGSGLGCLLLERLSVDYGKKSKLNFCSWPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDN-EAIYDICRRNLDIERP 222

[Close]

BLAST of EY688432 vs. ExPASy Swiss-Prot
Match: TBAD_PHYPO (Tubulin alpha-1A chain OS=Physarum polycephalum GN=ALTA PE=1 SV=1)

HSP 1 Score: 318.161 bits (814), Expect = 3.843e-86
Identity = 161/223 (72.20%), Postives = 171/223 (76.68%), Query Frame = 2

Query:   92 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPISSGLHICC*PLNRVLSTHSLVEAYGCGLFFSQMRPFYDTCRPSLDIGSP 760
            MRE ISIHIGQAG QVGNACWELYCLEHGIQPDGQMPSDK+VG GDDAFNTFFSETGAGKHVPRAVF+DLEPTVIDEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYTIGKEIVDLCLDR+RKLAD CTGLQGFLVF++V                 VDYGKKSKL F VYP          P N VLSTHSL+E      F       YD C+ +LDI  P
Sbjct:    1 MREVISIHIGQAGTQVGNACWELYCLEHGIQPDGQMPSDKSVGYGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLCLDRVRKLADQCTGLQGFLVFHSVGGGTGSGFGSLLLERLSVDYGKKSKLDFCVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVA-FMLDNEAIYDICKRALDIDRP 222

The following BLAST results are available for this feature:

BLAST of EY688432 vs. ExPASy Swiss-Prot

BLAST of EY688432 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 410


Match Name	E-value	Identity	Description
TBA3_BOVIN	1.011e-86	69.51	Tubulin alpha-3 chain OS=Bos taurus GN=TUBA3 PE=2 ...	[more]
TBA3C_HUMAN	1.011e-86	69.51	Tubulin alpha-3C/D chain OS=Homo sapiens GN=TUBA3C...	[more]
TBAT_ONCMY	1.321e-86	68.61	Tubulin alpha chain, testis-specific OS=Oncorhynch...	[more]
TBA1A_PIG	1.321e-86	69.51	Tubulin alpha-1A chain OS=Sus scrofa GN=TUBA1A PE=...	[more]
TBA2_PATVU	1.725e-86	68.61	Tubulin alpha-2/alpha-4 chain OS=Patella vulgata G...	[more]
TBA1_HORVU	1.725e-86	72.65	Tubulin alpha-1 chain OS=Hordeum vulgare GN=TUBA1 ...	[more]
TBA_BOMMO	2.943e-86	68.16	Tubulin alpha chain OS=Bombyx mori PE=2 SV=1	[more]
TBA_TOXGO	3.843e-86	71.30	Tubulin alpha chain OS=Toxoplasma gondii PE=3 SV=1	[more]
TBA_NEOCA	3.843e-86	71.30	Tubulin alpha chain OS=Neospora caninum GN=TUBA PE...	[more]
TBAD_PHYPO	3.843e-86	72.20	Tubulin alpha-1A chain OS=Physarum polycephalum GN...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C2-003-070-F10-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY688432 ID=EY688432; Name=EY688432; organism=Citrus sinensis; type=EST; length=860bp
AAGAGGCGTCTTATAAACCCCTTCGTTTAGATTCAATTACTTCTTCTTTT
GGCTGTGTACCTCGTCGTTTTTCTTCTCTTAATCTGCGAAAATGAGAGAG
TGCATTTCAATCCATATCGGTCAGGCCGGTATCCAGGTCGGAAATGCCTG
CTGGGAACTCTACTGCCTCGAGCACGGCATTCAGCCTGATGGCCAAATGC
CAAGTGATAAGACAGTCGGAGGTGGCGACGATGCTTTCAACACCTTTTTC
AGTGAAACAGGTGCAGGGAAGCACGTGCCTCGTGCTGTCTTTGTTGATCT
TGAGCCCACTGTCATTGATGAAGTGAGGACCGGAACTTACCGCCAGCTCT
TCCACCCTGAGCAGCTCATCAGTGGCAAGGAAGACGCTGCCAACAACTTC
GCCCGTGGCCACTATACCATTGGTAAGGAGATTGTTGATCTCTGCCTTGA
CCGCATCAGGAAGCTGGCTGATAACTGCACTGGTCTCCAGGGATTCCTTG
TTTTCAATGCTGTTGGTGGAGGAACTGGCTCTGGTCTTGGGTCTCTTCTT
CTGGAGAGGTTGTCTGTTGACTATGGAAAGAAGTCAAAGTTGGGCTTCAC
TGTCTACCCCATCTCCTCAGGTCTCCACATCTGTTGTTGACCCTTAAACA
GGGTCCTCTCAACCCACTCCCTGGTGGAAGCATACGGATGTGGGCTGTTC
TTCTCCCAAATGAGGCCATTTTATGACACCTGCCGGCCCTCCCTTGACAT
TGGAAGCCCCAACCAAAACTACCCTCACTAAACTTGGTCCTCAGGTAACT
TCTTCCCAGCACGCCCGCACGCAGAGCTGGGAAGGGGATCTCAATGGAGA
GGGGCACATA