EY688405

Overview
NameEY688405
Unique NameEY688405
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length838
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY688405 vs. ExPASy Swiss-Prot
Match: LIS1_BOVIN (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Bos taurus GN=PAFAH1B1 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.708e-12
Identity = 56/222 (25.23%), Postives = 95/222 (42.79%), Query Frame = 3
Query:    3 ASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPD--------------------GSLCASGGKDGVILLWDLAEGKRLYSL--DAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVW 602
            ASRD+TIK+W    +  Y ++    H EWV  VR  PN     I S S D+TV+VW ++  + +A L  H   V  ++ +P+                    G    SG +D  I +WD++ G  L +L      V   L  S  ++ L  A ++++++WD ++K  ++ L                         + TSL++      + +G  D  ++VW
Sbjct:  210 ASRDKTIKMWEV--QTGYCVKTFTGHREWVRMVR--PNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA--------------------HEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407          
BLAST of EY688405 vs. ExPASy Swiss-Prot
Match: KTNB1_CHICK (Katanin p80 WD40-containing subunit B1 OS=Gallus gallus GN=KATNB1 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.708e-12
Identity = 47/141 (33.33%), Postives = 73/141 (51.77%), Query Frame = 3
Query:    6 SRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHALCFSPNRYWLCAATEQSIKIWDLE 425
            S D  IKLW+     K  I +  +HT+ V C+RFSP+     + SA+ D TVK+W+L+  K+     GH+G VN V   P   L ASG  D  I  WDL +   +  ++  A  +  + F+P+   L    + S++++  E
Sbjct:  124 SLDTDIKLWDV--RRKGCIFKYKSHTQAVRCLRFSPDG--KWLASAADDHTVKLWDLTAGKVMFEFTGHSGPVNVVEFHPSEYLLASGSSDRTIRFWDLEKFHVVSCIEEEATPVRCILFNPDGCCLYGGFQDSLRVYGWE 260          
BLAST of EY688405 vs. ExPASy Swiss-Prot
Match: WDR48_CULQU (WD repeat-containing protein 48 homolog OS=Culex quinquefasciatus GN=CpipJ_CPIJ014111 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.537e-12
Identity = 60/217 (27.65%), Postives = 95/217 (43.78%), Query Frame = 3
Query:    3 ASRDRTIKLWNTLGECKYT--IQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV----------IHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR 614
            A RD  I++WN+         IQ  + H +WV+ +          ++SAS D TVKVWN       +TL  H  YV  +A + D    AS G D  I LWD+     L + +              I++L  +P+    +  +TE +++IWD  + + +  LK                      N+   +L  S DG+ + SG +DG I++W IG+
Sbjct:   33 AGRDAIIRVWNSTQTSSQEPYIQSMEHHNDWVNDIVLCCGGRN--LISASCDTTVKVWNAHKGFCMSTLRTHRDYVQALAYAKDREQVASAGLDKAIFLWDVNTLTALTASNNTVTTSSITGSKDSIYSLAMNPSGTIIVSGSTENTLRIWDPRTCNKIAKLK------------------GHTENV--KALVVSEDGTQVVSGSSDGKIKLWSIGQ 227          
BLAST of EY688405 vs. ExPASy Swiss-Prot
Match: TUP11_SCHPO (Transcriptional repressor tup11 OS=Schizosaccharomyces pombe GN=tup11 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.537e-12
Identity = 49/158 (31.01%), Postives = 80/158 (50.63%), Query Frame = 3
Query:    6 SRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK------------LRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA--GAVIHALCFSPN-RYWLCAATEQSIKIWDLESKS 434
            S D+ I++W+  G     ++  + H E V  + FSP++    ++S S D+T+KVW L   +             +AT  GHT +V +VAVSPD     SG KD  +  WDL  G+   +      +VI ++CFSP+ R +   + +   +IW ++  S
Sbjct:  462 SLDQIIRVWSVSGTL---VERLEGHKESVYSIAFSPDS--SILLSGSLDKTIKVWELQATRSVGLSAIKPEGICKATYTGHTDFVLSVAVSPDSRWGLSGSKDRSMQFWDLQTGQSYLTCQGHKNSVI-SVCFSPDGRQFASGSGDLRARIWSIDPAS 613          

HSP 2 Score: 68.1662 bits (165), Expect = 6.670e-11
Identity = 48/173 (27.75%), Postives = 84/173 (48.55%), Query Frame = 3
Query:   87 WVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVW 602
            +V  + FSP+     +V+ + DR +K+W+LS  K+R   +GH   + ++  S +G    SG  D    LWD+  G+ +  L+    + A+  SPN  ++   + +Q I++W + S ++VE L+                      ++Y  S+ +S D S L SG  D  I+VW
Sbjct:  362 YVRTIAFSPDGKY--LVTGTEDRQIKLWDLSTQKVRYVFSGHEQDIYSLDFSHNGRFIVSGSGDRTARLWDVETGQCILKLEIENGVTAIAISPNDQFIAVGSLDQIIRVWSV-SGTLVERLE------------------GHKESVY--SIAFSPDSSILLSGSLDKTIKVW 511          
BLAST of EY688405 vs. ExPASy Swiss-Prot
Match: LIS1_XENTR (Lissencephaly-1 homolog OS=Xenopus tropicalis GN=pafah1b1 PE=2 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 3.537e-12
Identity = 57/222 (25.68%), Postives = 96/222 (43.24%), Query Frame = 3
Query:    3 ASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPD--------------------GSLCASGGKDGVILLWDLAEGKRLYSL-DAGAVIHALCFSP-NRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVW 602
            ASRD+TIK+W    +  Y ++    H EWV  VR  PN     I S S D+TV+VW ++  + +A L  H   V  ++ +P+                    G    SG +D  I +WD++ G  L +L      +  + F P  ++ L  A +++I+IWD ++K  ++ L                         + TSL++      + +G  D  ++VW
Sbjct:  210 ASRDKTIKMWEV--QTGYCVKTFTGHREWVRMVR--PNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSTISDATGSETKKSGKPGPFLLSGSRDKTIKMWDISIGMCLMTLVGHDNWVRGVQFHPGGKFILSCADDKTIRIWDYKNKRCMKTLNA--------------------HEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407          
BLAST of EY688405 vs. ExPASy Swiss-Prot
Match: LIS1B_XENLA (Lissencephaly-1 homolog B OS=Xenopus laevis GN=pafah1b1-B PE=2 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 3.537e-12
Identity = 57/222 (25.68%), Postives = 96/222 (43.24%), Query Frame = 3
Query:    3 ASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPD--------------------GSLCASGGKDGVILLWDLAEGKRLYSL-DAGAVIHALCFSP-NRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVW 602
            ASRD+TIK+W    +  Y ++    H EWV  VR  PN     I S S D+TV+VW ++  + +A L  H   V  ++ +P+                    G    SG +D  I +WD++ G  L +L      +  + F P  ++ L  A +++I+IWD ++K  ++ L                         + TSL++      + +G  D  ++VW
Sbjct:  210 ASRDKTIKMWEV--QTGYCVKTFTGHREWVRMVR--PNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSTISDATGSETKRSGKPGPFLLSGSRDKTIKMWDISIGMCLMTLVGHDNWVRGVQFHPGGKFILSCADDKTIRIWDYKNKRCMKTLNA--------------------HEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407          
BLAST of EY688405 vs. ExPASy Swiss-Prot
Match: LIS1A_XENLA (Lissencephaly-1 homolog A OS=Xenopus laevis GN=pafah1b1-A PE=2 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 3.537e-12
Identity = 57/222 (25.68%), Postives = 96/222 (43.24%), Query Frame = 3
Query:    3 ASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPD--------------------GSLCASGGKDGVILLWDLAEGKRLYSL-DAGAVIHALCFSP-NRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVW 602
            ASRD+TIK+W    +  Y ++    H EWV  VR  PN     I S S D+TV+VW ++  + +A L  H   V  ++ +P+                    G    SG +D  I +WD++ G  L +L      +  + F P  ++ L  A +++I+IWD ++K  ++ L                         + TSL++      + +G  D  ++VW
Sbjct:  210 ASRDKTIKMWEV--QTGYCVKTFTGHREWVRMVR--PNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSTISDATGSETKKSGKPGPFLLSGSRDKTIKMWDISIGMCLMTLVGHDNWVRGVQFHPGGKFILSCADDKTIRIWDYKNKRCMKTLNA--------------------HEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407          
BLAST of EY688405 vs. ExPASy Swiss-Prot
Match: MUT11_CHLRE (Protein Mut11 OS=Chlamydomonas reinhardtii GN=Mut11 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.619e-12
Identity = 46/144 (31.94%), Postives = 73/144 (50.69%), Query Frame = 3
Query:    3 ASRDRTIKLWNT-LGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEG---KRLYSLDAGAVIHALCFSPN-RYWLCAATEQSIKIWD 419
            A+ D ++KLW+   G C  T+     HT +V C  F        + S S+D T+++W++ + +    +  H+  V + A S DGS+  +   DG+I LWD   G   K L+  D+  V  A  F+PN +Y LC   +   K+WD
Sbjct:  100 AADDHSLKLWDAETGACLRTLT---GHTNYVFCCNFD-GAAGHLLASGSFDETLRLWDVRSGRCLREVPAHSDPVTSAAFSYDGSMVVTSSLDGLIRLWDTQTGHCLKTLFDRDSPPVSFA-AFTPNAKYVLCNTLDGRAKLWD 238          
BLAST of EY688405 vs. ExPASy Swiss-Prot
Match: LIS1_DICDI (Lissencephaly-1 homolog OS=Dictyostelium discoideum GN=lis1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.619e-12
Identity = 46/122 (37.70%), Postives = 66/122 (54.10%), Query Frame = 3
Query:    6 SRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL-DAGAVIHALCFS 365
            S D TIKLW+    +C  T+     H   VSCVRF+P+  Q  ++S+S D+T+KVW  +      TL GH  +V  + VS DGS  AS   D  I  W++ +G+ L +  +   V+  L FS
Sbjct:  167 SADLTIKLWDFQTYDCVKTLH---GHDHNVSCVRFTPSGDQ--LISSSRDKTIKVWEAATGYCIKTLVGHEDWVRKITVSEDGSCIASCSNDQTIKTWNIVKGECLATYREHSHVVECLAFS 283          

HSP 2 Score: 69.3218 bits (168), Expect = 2.994e-11
Identity = 48/172 (27.91%), Postives = 74/172 (43.02%), Query Frame = 3
Query:    6 SRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFS-------PNTLQPT---------------------IVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFS---PNRYWLCAATEQSIKIWDLE 425
            S D+TIK WN + GEC  T +E   H+  V C+ FS       P +L  T                     + + S D+T+K+W L+  +  AT  GH  +V  V   P G    S G D  I +WD+A+G+ + +++        C      N +      +  IK+W L+
Sbjct:  251 SNDQTIKTWNIVKGECLATYRE---HSHVVECLAFSTANIIDIPGSLLSTPEGKSKVKQGPGGNLVGQCGYLATGSRDKTIKIWELATGRCLATYIGHDNWVRAVRFHPCGKFLLSVGDDKTIRVWDIAQGRCIKTINEAHTHFISCLDFCLHNPHIATGGVDDVIKVWKLQ 419          
BLAST of EY688405 vs. ExPASy Swiss-Prot
Match: LIS1_PIG (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Sus scrofa GN=PAFAH1B1 PE=2 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 6.033e-12
Identity = 55/222 (24.77%), Postives = 95/222 (42.79%), Query Frame = 3
Query:    3 ASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPD--------------------GSLCASGGKDGVILLWDLAEGKRLYSL--DAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVW 602
            A+RD+TIK+W    +  Y ++    H EWV  VR  PN     I S S D+TV+VW ++  + +A L  H   V  ++ +P+                    G    SG +D  I +WD++ G  L +L      V   L  S  ++ L  A ++++++WD ++K  ++ L                         + TSL++      + +G  D  ++VW
Sbjct:  210 AARDKTIKMWEV--QTGYCVKTFTGHREWVRMVR--PNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA--------------------HEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407          
The following BLAST results are available for this feature:
BLAST of EY688405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
LIS1_BOVIN2.708e-1225.23Platelet-activating factor acetylhydrolase IB subu... [more]
KTNB1_CHICK2.708e-1233.33Katanin p80 WD40-containing subunit B1 OS=Gallus g... [more]
WDR48_CULQU3.537e-1227.65WD repeat-containing protein 48 homolog OS=Culex q... [more]
TUP11_SCHPO3.537e-1231.01Transcriptional repressor tup11 OS=Schizosaccharom... [more]
LIS1_XENTR3.537e-1225.68Lissencephaly-1 homolog OS=Xenopus tropicalis GN=p... [more]
LIS1B_XENLA3.537e-1225.68Lissencephaly-1 homolog B OS=Xenopus laevis GN=paf... [more]
LIS1A_XENLA3.537e-1225.68Lissencephaly-1 homolog A OS=Xenopus laevis GN=paf... [more]
MUT11_CHLRE4.619e-1231.94Protein Mut11 OS=Chlamydomonas reinhardtii GN=Mut1... [more]
LIS1_DICDI4.619e-1237.70Lissencephaly-1 homolog OS=Dictyostelium discoideu... [more]
LIS1_PIG6.033e-1224.77Platelet-activating factor acetylhydrolase IB subu... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-070-C11-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY688405 ID=EY688405; Name=EY688405; organism=Citrus sinensis; type=EST; length=838bp
CGGCCTCTCGTGACCGTACGATCAAGTTGTGGAACACGCTCGGCGAGTGC
AAGTACACGATTCAAGAGGGAGACGCTCACACTGAGTGGGTTTCTTGTGT
TAGGTTCAGCCCCAACACGCTTCAGCCCACTATCGTTTCCGCCTCGTGGG
ACCGTACGGTCAAAGTGTGGAATTTGAGCAACTGCAAGCTTAGGGCTACT
CTTGCCGGGCACACTGGATACGTGAACACCGTCGCAGTGTCGCCGGATGG
TTCGTTGTGTGCCAGTGGAGGGAAAGATGGTGTGATTCTGTTGTGGGATT
TGGCTGAGGGAAAAAGACTCTACTCGCTCGACGCTGGTGCTGTCATTCAC
GCGCTCTGCTTCAGTCCTAATAGGTATTGGTTGTGTGCGGCGACTGAGCA
GAGTATAAAGATCTGGGATTTGGAGAGCAAGAGCATTGTCGAGGATCTTA
AGGTTGATCTTAAGACCGAGGCCGAGAAATCTGAGGCCACCACCGCCACC
ACCACCATAAAAAAGAAGAACATTTACTGCACAAGCTTGAACTGGAGTGT
TGATGGAAGCACCTTGTTCAGTGGTTATACAGATGGTGTGATCAGAGTCT
GGGGTATTGGCCGTTATTGAAAACTGCTTGAGTAATTGCAAAATGCTGTT
CTTTTTCGATTACAAACTAGTTTCTCGACTTTGTAGGCAGTTTCAAACCT
ATTTAGAATTTAAGAATTTTGTTCAAAATGGTTTTAAGGATATTTTGTTC
TCCTTTTTTTGGAATCTAAATTGGCTTTTGAGGGCCCCGGGGGTTTGGGT
TTGGGTTTATTAATTTTAAATGGTGGAAAATTTAAAAA
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