EY688405
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY688405 vs. ExPASy Swiss-Prot
Match: LIS1_BOVIN (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Bos taurus GN=PAFAH1B1 PE=1 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 2.708e-12 Identity = 56/222 (25.23%), Postives = 95/222 (42.79%), Query Frame = 3 Query: 3 ASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPD--------------------GSLCASGGKDGVILLWDLAEGKRLYSL--DAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVW 602 ASRD+TIK+W + Y ++ H EWV VR PN I S S D+TV+VW ++ + +A L H V ++ +P+ G SG +D I +WD++ G L +L V L S ++ L A ++++++WD ++K ++ L + TSL++ + +G D ++VW Sbjct: 210 ASRDKTIKMWEV--QTGYCVKTFTGHREWVRMVR--PNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA--------------------HEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407
BLAST of EY688405 vs. ExPASy Swiss-Prot
Match: KTNB1_CHICK (Katanin p80 WD40-containing subunit B1 OS=Gallus gallus GN=KATNB1 PE=2 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 2.708e-12 Identity = 47/141 (33.33%), Postives = 73/141 (51.77%), Query Frame = 3 Query: 6 SRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHALCFSPNRYWLCAATEQSIKIWDLE 425 S D IKLW+ K I + +HT+ V C+RFSP+ + SA+ D TVK+W+L+ K+ GH+G VN V P L ASG D I WDL + + ++ A + + F+P+ L + S++++ E Sbjct: 124 SLDTDIKLWDV--RRKGCIFKYKSHTQAVRCLRFSPDG--KWLASAADDHTVKLWDLTAGKVMFEFTGHSGPVNVVEFHPSEYLLASGSSDRTIRFWDLEKFHVVSCIEEEATPVRCILFNPDGCCLYGGFQDSLRVYGWE 260
BLAST of EY688405 vs. ExPASy Swiss-Prot
Match: WDR48_CULQU (WD repeat-containing protein 48 homolog OS=Culex quinquefasciatus GN=CpipJ_CPIJ014111 PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.537e-12 Identity = 60/217 (27.65%), Postives = 95/217 (43.78%), Query Frame = 3 Query: 3 ASRDRTIKLWNTLGECKYT--IQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV----------IHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR 614 A RD I++WN+ IQ + H +WV+ + ++SAS D TVKVWN +TL H YV +A + D AS G D I LWD+ L + + I++L +P+ + +TE +++IWD + + + LK N+ +L S DG+ + SG +DG I++W IG+ Sbjct: 33 AGRDAIIRVWNSTQTSSQEPYIQSMEHHNDWVNDIVLCCGGRN--LISASCDTTVKVWNAHKGFCMSTLRTHRDYVQALAYAKDREQVASAGLDKAIFLWDVNTLTALTASNNTVTTSSITGSKDSIYSLAMNPSGTIIVSGSTENTLRIWDPRTCNKIAKLK------------------GHTENV--KALVVSEDGTQVVSGSSDGKIKLWSIGQ 227
BLAST of EY688405 vs. ExPASy Swiss-Prot
Match: TUP11_SCHPO (Transcriptional repressor tup11 OS=Schizosaccharomyces pombe GN=tup11 PE=1 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.537e-12 Identity = 49/158 (31.01%), Postives = 80/158 (50.63%), Query Frame = 3 Query: 6 SRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK------------LRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA--GAVIHALCFSPN-RYWLCAATEQSIKIWDLESKS 434 S D+ I++W+ G ++ + H E V + FSP++ ++S S D+T+KVW L + +AT GHT +V +VAVSPD SG KD + WDL G+ + +VI ++CFSP+ R + + + +IW ++ S Sbjct: 462 SLDQIIRVWSVSGTL---VERLEGHKESVYSIAFSPDS--SILLSGSLDKTIKVWELQATRSVGLSAIKPEGICKATYTGHTDFVLSVAVSPDSRWGLSGSKDRSMQFWDLQTGQSYLTCQGHKNSVI-SVCFSPDGRQFASGSGDLRARIWSIDPAS 613 HSP 2 Score: 68.1662 bits (165), Expect = 6.670e-11 Identity = 48/173 (27.75%), Postives = 84/173 (48.55%), Query Frame = 3 Query: 87 WVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVW 602 +V + FSP+ +V+ + DR +K+W+LS K+R +GH + ++ S +G SG D LWD+ G+ + L+ + A+ SPN ++ + +Q I++W + S ++VE L+ ++Y S+ +S D S L SG D I+VW Sbjct: 362 YVRTIAFSPDGKY--LVTGTEDRQIKLWDLSTQKVRYVFSGHEQDIYSLDFSHNGRFIVSGSGDRTARLWDVETGQCILKLEIENGVTAIAISPNDQFIAVGSLDQIIRVWSV-SGTLVERLE------------------GHKESVY--SIAFSPDSSILLSGSLDKTIKVW 511
BLAST of EY688405 vs. ExPASy Swiss-Prot
Match: LIS1_XENTR (Lissencephaly-1 homolog OS=Xenopus tropicalis GN=pafah1b1 PE=2 SV=3) HSP 1 Score: 72.4034 bits (176), Expect = 3.537e-12 Identity = 57/222 (25.68%), Postives = 96/222 (43.24%), Query Frame = 3 Query: 3 ASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPD--------------------GSLCASGGKDGVILLWDLAEGKRLYSL-DAGAVIHALCFSP-NRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVW 602 ASRD+TIK+W + Y ++ H EWV VR PN I S S D+TV+VW ++ + +A L H V ++ +P+ G SG +D I +WD++ G L +L + + F P ++ L A +++I+IWD ++K ++ L + TSL++ + +G D ++VW Sbjct: 210 ASRDKTIKMWEV--QTGYCVKTFTGHREWVRMVR--PNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSTISDATGSETKKSGKPGPFLLSGSRDKTIKMWDISIGMCLMTLVGHDNWVRGVQFHPGGKFILSCADDKTIRIWDYKNKRCMKTLNA--------------------HEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407
BLAST of EY688405 vs. ExPASy Swiss-Prot
Match: LIS1B_XENLA (Lissencephaly-1 homolog B OS=Xenopus laevis GN=pafah1b1-B PE=2 SV=3) HSP 1 Score: 72.4034 bits (176), Expect = 3.537e-12 Identity = 57/222 (25.68%), Postives = 96/222 (43.24%), Query Frame = 3 Query: 3 ASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPD--------------------GSLCASGGKDGVILLWDLAEGKRLYSL-DAGAVIHALCFSP-NRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVW 602 ASRD+TIK+W + Y ++ H EWV VR PN I S S D+TV+VW ++ + +A L H V ++ +P+ G SG +D I +WD++ G L +L + + F P ++ L A +++I+IWD ++K ++ L + TSL++ + +G D ++VW Sbjct: 210 ASRDKTIKMWEV--QTGYCVKTFTGHREWVRMVR--PNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSTISDATGSETKRSGKPGPFLLSGSRDKTIKMWDISIGMCLMTLVGHDNWVRGVQFHPGGKFILSCADDKTIRIWDYKNKRCMKTLNA--------------------HEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407
BLAST of EY688405 vs. ExPASy Swiss-Prot
Match: LIS1A_XENLA (Lissencephaly-1 homolog A OS=Xenopus laevis GN=pafah1b1-A PE=2 SV=3) HSP 1 Score: 72.4034 bits (176), Expect = 3.537e-12 Identity = 57/222 (25.68%), Postives = 96/222 (43.24%), Query Frame = 3 Query: 3 ASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPD--------------------GSLCASGGKDGVILLWDLAEGKRLYSL-DAGAVIHALCFSP-NRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVW 602 ASRD+TIK+W + Y ++ H EWV VR PN I S S D+TV+VW ++ + +A L H V ++ +P+ G SG +D I +WD++ G L +L + + F P ++ L A +++I+IWD ++K ++ L + TSL++ + +G D ++VW Sbjct: 210 ASRDKTIKMWEV--QTGYCVKTFTGHREWVRMVR--PNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSTISDATGSETKKSGKPGPFLLSGSRDKTIKMWDISIGMCLMTLVGHDNWVRGVQFHPGGKFILSCADDKTIRIWDYKNKRCMKTLNA--------------------HEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407
BLAST of EY688405 vs. ExPASy Swiss-Prot
Match: MUT11_CHLRE (Protein Mut11 OS=Chlamydomonas reinhardtii GN=Mut11 PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 4.619e-12 Identity = 46/144 (31.94%), Postives = 73/144 (50.69%), Query Frame = 3 Query: 3 ASRDRTIKLWNT-LGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEG---KRLYSLDAGAVIHALCFSPN-RYWLCAATEQSIKIWD 419 A+ D ++KLW+ G C T+ HT +V C F + S S+D T+++W++ + + + H+ V + A S DGS+ + DG+I LWD G K L+ D+ V A F+PN +Y LC + K+WD Sbjct: 100 AADDHSLKLWDAETGACLRTLT---GHTNYVFCCNFD-GAAGHLLASGSFDETLRLWDVRSGRCLREVPAHSDPVTSAAFSYDGSMVVTSSLDGLIRLWDTQTGHCLKTLFDRDSPPVSFA-AFTPNAKYVLCNTLDGRAKLWD 238
BLAST of EY688405 vs. ExPASy Swiss-Prot
Match: LIS1_DICDI (Lissencephaly-1 homolog OS=Dictyostelium discoideum GN=lis1 PE=1 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 4.619e-12 Identity = 46/122 (37.70%), Postives = 66/122 (54.10%), Query Frame = 3 Query: 6 SRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL-DAGAVIHALCFS 365 S D TIKLW+ +C T+ H VSCVRF+P+ Q ++S+S D+T+KVW + TL GH +V + VS DGS AS D I W++ +G+ L + + V+ L FS Sbjct: 167 SADLTIKLWDFQTYDCVKTLH---GHDHNVSCVRFTPSGDQ--LISSSRDKTIKVWEAATGYCIKTLVGHEDWVRKITVSEDGSCIASCSNDQTIKTWNIVKGECLATYREHSHVVECLAFS 283 HSP 2 Score: 69.3218 bits (168), Expect = 2.994e-11 Identity = 48/172 (27.91%), Postives = 74/172 (43.02%), Query Frame = 3 Query: 6 SRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFS-------PNTLQPT---------------------IVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFS---PNRYWLCAATEQSIKIWDLE 425 S D+TIK WN + GEC T +E H+ V C+ FS P +L T + + S D+T+K+W L+ + AT GH +V V P G S G D I +WD+A+G+ + +++ C N + + IK+W L+ Sbjct: 251 SNDQTIKTWNIVKGECLATYRE---HSHVVECLAFSTANIIDIPGSLLSTPEGKSKVKQGPGGNLVGQCGYLATGSRDKTIKIWELATGRCLATYIGHDNWVRAVRFHPCGKFLLSVGDDKTIRVWDIAQGRCIKTINEAHTHFISCLDFCLHNPHIATGGVDDVIKVWKLQ 419
BLAST of EY688405 vs. ExPASy Swiss-Prot
Match: LIS1_PIG (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Sus scrofa GN=PAFAH1B1 PE=2 SV=3) HSP 1 Score: 71.633 bits (174), Expect = 6.033e-12 Identity = 55/222 (24.77%), Postives = 95/222 (42.79%), Query Frame = 3 Query: 3 ASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPD--------------------GSLCASGGKDGVILLWDLAEGKRLYSL--DAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVW 602 A+RD+TIK+W + Y ++ H EWV VR PN I S S D+TV+VW ++ + +A L H V ++ +P+ G SG +D I +WD++ G L +L V L S ++ L A ++++++WD ++K ++ L + TSL++ + +G D ++VW Sbjct: 210 AARDKTIKMWEV--QTGYCVKTFTGHREWVRMVR--PNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA--------------------HEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407 The following BLAST results are available for this feature:
BLAST of EY688405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 145
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >EY688405 ID=EY688405; Name=EY688405; organism=Citrus sinensis; type=EST; length=838bpback to top |