EY688405

Overview
NameEY688405
Unique NameEY688405
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length838
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY688405 vs. ExPASy Swiss-Prot
Match: LIS1B_DANRE (Lissencephaly-1 homolog B OS=Danio rerio GN=pafah1b1b PE=2 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 2.292e-11
Identity = 54/222 (24.32%), Postives = 95/222 (42.79%), Query Frame = 3
Query:    3 ASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPD--------------------GSLCASGGKDGVILLWDLAEGKRLYSL-DAGAVIHALCFSP-NRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVW 602
            ASRD+T+K+W       Y ++    H EWV  VR  PN     + S S D+TV+VW ++  + +A L  H   V  ++ +P+                    G    SG +D  I +WD++ G  L +L      +  + F P  R+ +  A +++++IWD ++K  ++ L                         + TSL++      + +G  D  ++VW
Sbjct:  210 ASRDKTMKMWEVA--TGYCVKTFTGHREWVRMVR--PNQDGTLLASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESAHPTISEATGSENKKSGKPGPFLLSGSRDKTIKMWDISTGMCLMTLVGHDNWVRGVLFHPGGRFVVSCADDKTLRIWDYKNKRCMKTLSA--------------------HEHFVTSLDFHKASPYVVTGSVDQTVKVW 407          
BLAST of EY688405 vs. ExPASy Swiss-Prot
Match: SEL10_CAEEL (F-box/WD repeat-containing protein sel-10 OS=Caenorhabditis elegans GN=sel-10 PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 2.994e-11
Identity = 45/141 (31.91%), Postives = 77/141 (54.61%), Query Frame = 3
Query:    6 SRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSPNRYWLCAAT-EQSIKIWD 419
            S DRT+K+W+T+ G   +T+Q    HT  V C+  + + L    V+ S D T++VW++ + +  ATL GH   V  V    DG+   SGG D  + +W+   G+ + +L      +++L F   R  +C+ + + SI++WD
Sbjct:  315 STDRTVKVWSTVDGSLLHTLQ---GHTSTVRCMAMAGSIL----VTGSRDTTLRVWDVESGRHLATLHGHHAAVRCVQF--DGTTVVSGGYDFTVKIWNAHTGRCIRTLTGHNNRVYSLLFESERSIVCSGSLDTSIRVWD 446          
BLAST of EY688405 vs. ExPASy Swiss-Prot
Match: WDR61_DANRE (WD repeat-containing protein 61 OS=Danio rerio GN=wdr61 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.910e-11
Identity = 55/178 (30.90%), Postives = 80/178 (44.94%), Query Frame = 3
Query:   87 WVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRA--TLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHALCFSPNRYWLCAATE-QSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 608
            W +    S      TIV+ S D  VKVW  S+ KL    TL GH   V +V +S +G++ AS   D  I LWDL  GK++ S+DAG V    + FSP+  ++   +    + I+ +ES      L                         +  S+ +S DG  L SG  DG+I ++ I
Sbjct:   20 WTAAWGRSEKDGSETIVTGSLDDLVKVWKWSDEKLELQWTLEGHQLGVVSVNISQNGAIAASSSLDAHIRLWDLETGKQIKSMDAGPVDAWTVAFSPDSKYIATGSHLGKVNIFGVESGKKEHSLDT--------------------RGKFILSIAYSPDGKYLASGAIDGIINIFDI 177          
BLAST of EY688405 vs. ExPASy Swiss-Prot
Match: WDR5_DICDI (WD repeat-containing protein 5 homolog OS=Dictyostelium discoideum GN=wdr5 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.910e-11
Identity = 50/213 (23.47%), Postives = 98/213 (46.01%), Query Frame = 3
Query:    3 ASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK--RLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGRY*KLLE 632
            AS D+TIK+W    G+ + T++    H E +S + +S ++    I SAS D+T+K+W++ + K+  TL GH  YV  V+ +P  +L  SG  D  + +WD+  G+  ++ S  +  V            +  + + +++IWD  +  ++  +  +                        + + +S +G  + +G  D  +R+W      K L+
Sbjct:   64 ASADKTIKIWGAYDGKFERTLE---GHKEGISDIAWSQDS--KLICSASDDKTIKIWDVESGKMVKTLKGHKEYVFGVSFNPQSNLIVSGSFDENVRIWDVNTGECTKMISAHSDPVTGVHFNRDGTLVVSGSYDGTVRIWDTTTGQLLNTISTE-------------------DGKEVSFVKFSPNGKFVLAGTLDNTLRLWSYNNNKKCLK 252          
BLAST of EY688405 vs. ExPASy Swiss-Prot
Match: SPG16_MOUSE (Sperm-associated antigen 16 protein OS=Mus musculus GN=Spag16 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.910e-11
Identity = 47/156 (30.13%), Postives = 79/156 (50.64%), Query Frame = 3
Query:    3 ASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGA-VIHALCFSPNRYWLCAATEQSI-KIWDLESKSIVEDLKVDL 461
            +S D TIKLW+   GEC  T+ EG  H  W SC   S       + SAS D T K+W++++ + R TL GHT  VN++   P  ++  +   D  + +WD   GK   SL      ++   F+P  + + +   + + K+WD   + ++  + +D+
Sbjct:  420 SSGDSTIKLWDLNKGECTLTL-EGHNHAVW-SCTWHSCGDF---VASASLDMTSKIWDVNSERCRYTLYGHTDSVNSIEFFPFSNILLTASADKTLSVWDARTGKCEQSLYGHMHSVNDATFTPRGHIIASCDARGVTKLWDF--RKLIPIVSIDV 568          
BLAST of EY688405 vs. ExPASy Swiss-Prot
Match: SNR40_PONAB (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Pongo abelii GN=SNRNP40 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.910e-11
Identity = 53/205 (25.85%), Postives = 85/205 (41.46%), Query Frame = 3
Query:    3 ASRDRTIKLWNTLGEC-KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDG-SLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFS-PNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 608
            A  DR I LWN  G+C  Y   +G +     + +    NT    + SAS D+TV VW+    +    L GHT +VN+   +  G  L  +G  DG + LWD+ +   + +      + A+ F+  +   +    +  IK+WDL    +   ++                          T L+ S +GS L S   D  +RVW +
Sbjct:   84 AGFDRLILLWNVYGDCGNYATLKGYSG----AVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADS--------------------VTGLSLSSEGSYLLSNAMDNTVRVWDV 264          
BLAST of EY688405 vs. ExPASy Swiss-Prot
Match: PRP4_ARATH (U4/U6 small nuclear ribonucleoprotein PRP4-like protein OS=Arabidopsis thaliana GN=EMB2776 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.910e-11
Identity = 45/145 (31.03%), Postives = 74/145 (51.03%), Query Frame = 3
Query:    3 ASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG-AVIHALCFSPNRYWLCAATEQS-IKIWDLESK 431
            AS DRT KLW T G     +Q  + H + ++ V F P+     + + S+D+T ++W+++         GH+  V  +A   DG+L AS G D +  +WDL  G+ +         + ++ FSPN Y L +  E +  +IWDL  +
Sbjct:  316 ASADRTAKLWKTDGTL---LQTFEGHLDRLARVAFHPSGKY--LGTTSYDKTWRLWDINTGAELLLQEGHSRSVYGIAFQQDGALAASCGLDSLARVWDLRTGRSILVFQGHIKPVFSVNFSPNGYHLASGGEDNQCRIWDLRMR 455          
BLAST of EY688405 vs. ExPASy Swiss-Prot
Match: KTNB1_XENLA (Katanin p80 WD40-containing subunit B1 OS=Xenopus laevis GN=katnb1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.910e-11
Identity = 41/126 (32.54%), Postives = 66/126 (52.38%), Query Frame = 3
Query:   78 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGA-VIHALCFSPNRYWLCAAT-EQSIKIWDLESKSIVEDL 449
            HT  V  VRF  N  +  IV+ S   ++++W+L   K+  TL GH   V+++   P G   ASG  D  I LWD+     ++        +  L FSP+  WL +A+ + S+K+WDL +  ++ +L
Sbjct:   62 HTTPVESVRF--NNSEELIVAGSQSGSLRIWDLEAAKILRTLMGHKANVSSLDFHPYGEFVASGSLDTNIKLWDVRRKGCVFRYKGHTQAVRCLRFSPDGKWLASASDDHSVKLWDLTAGKMMAEL 185          

HSP 2 Score: 68.9366 bits (167), Expect = 3.910e-11
Identity = 45/151 (29.80%), Postives = 76/151 (50.33%), Query Frame = 3
Query:    6 SRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKV 455
            S D  IKLW+     K  +     HT+ V C+RFSP+     + SAS D +VK+W+L+  K+ A L+ H G VN +   P+  L ASG  D  +  WDL + + +   +   + + A+ FS +   +    + S++++  E     + + V
Sbjct:  124 SLDTNIKLWDV--RRKGCVFRYKGHTQAVRCLRFSPDG--KWLASASDDHSVKLWDLTAGKMMAELSEHKGPVNIIEFHPNEYLLASGSADRTVRFWDLEKFQLVGCTEGETIPVRAILFSNDGGCIFCGGKDSLRVYGWEPDQCFDTVPV 270          
BLAST of EY688405 vs. ExPASy Swiss-Prot
Match: KTNB1_STRPU (Katanin p80 WD40-containing subunit B1 OS=Strongylocentrotus purpuratus GN=KATNB1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.910e-11
Identity = 44/149 (29.53%), Postives = 75/149 (50.34%), Query Frame = 3
Query:   12 DRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGA-VIHALCFSPNRYWLCAATEQ-SIKIWDLESKSIVEDLK 452
            D+ + LW  +G+    I     HT  V  V+F  N+ +  +V+ S   T+K+++L   K+  TL GH   +  +   P G   ASG  D  + LWD+     +Y+    +  ++ + FSP+  WL  A+E  +IK+WDL    + ++ K
Sbjct:   38 DKKVNLW-AVGKQNCIISLS-GHTSPVDSVKF--NSSEELVVAGSQSGTMKIYDLEPAKIVRTLTGHRNSIRCMDFHPFGEFVASGSTDTNVKLWDVRRKGCIYTYKGHSDQVNMIKFSPDGKWLVTASEDTTIKLWDLTMGKLFQEFK 182          

HSP 2 Score: 68.9366 bits (167), Expect = 3.910e-11
Identity = 43/142 (30.28%), Postives = 74/142 (52.11%), Query Frame = 3
Query:    6 SRDRTIKLWNTLGE-CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGA-VIHALCFSPNRYWLCAATEQSIKIWDLE 425
            S D  +KLW+   + C YT +    H++ V+ ++FSP+     +V+AS D T+K+W+L+  KL      HTG V  +   P+  L ASG  D  +  WDL   + + S   GA  + ++ F P+  +L  +++  +  +  E
Sbjct:  120 STDTNVKLWDVRRKGCIYTYK---GHSDQVNMIKFSPDG--KWLVTASEDTTIKLWDLTMGKLFQEFKNHTGGVTGIEFHPNEFLLASGSSDRTVQFWDLETFQLVSSTSPGASAVRSISFHPDGSYLFCSSQDMLHAFGWE 256          
BLAST of EY688405 vs. ExPASy Swiss-Prot
Match: TAF5_DROME (Transcription initiation factor TFIID subunit 5 OS=Drosophila melanogaster GN=Taf5 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.107e-11
Identity = 45/150 (30.00%), Postives = 70/150 (46.67%), Query Frame = 3
Query:    6 SRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK--RLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDL 449
            S D TI+LW+ L         G  +  W   VRF+P+      VS S+D+T ++W   + +      GH   V+ V   P+ +  A+G  D  + LWD   G+  RL +   G+V      +  RY    + + +I IWDL + S+V  L
Sbjct:  469 SEDSTIRLWSLLTWSCVVTYRGHVYPVWD--VRFAPHGYY--FVSCSYDKTARLWATDSNQALRVFVGHLSDVDCVQFHPNSNYVATGSSDRTVRLWDNMTGQSVRLMTGHKGSVSSLAFSACGRYLASGSVDHNIIIWDLSNGSLVTTL 614          
The following BLAST results are available for this feature:
BLAST of EY688405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
LIS1B_DANRE2.292e-1124.32Lissencephaly-1 homolog B OS=Danio rerio GN=pafah1... [more]
SEL10_CAEEL2.994e-1131.91F-box/WD repeat-containing protein sel-10 OS=Caeno... [more]
WDR61_DANRE3.910e-1130.90WD repeat-containing protein 61 OS=Danio rerio GN=... [more]
WDR5_DICDI3.910e-1123.47WD repeat-containing protein 5 homolog OS=Dictyost... [more]
SPG16_MOUSE3.910e-1130.13Sperm-associated antigen 16 protein OS=Mus musculu... [more]
SNR40_PONAB3.910e-1125.85U5 small nuclear ribonucleoprotein 40 kDa protein ... [more]
PRP4_ARATH3.910e-1131.03U4/U6 small nuclear ribonucleoprotein PRP4-like pr... [more]
KTNB1_XENLA3.910e-1132.54Katanin p80 WD40-containing subunit B1 OS=Xenopus ... [more]
KTNB1_STRPU3.910e-1129.53Katanin p80 WD40-containing subunit B1 OS=Strongyl... [more]
TAF5_DROME5.107e-1130.00Transcription initiation factor TFIID subunit 5 OS... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-070-C11-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY688405 ID=EY688405; Name=EY688405; organism=Citrus sinensis; type=EST; length=838bp
CGGCCTCTCGTGACCGTACGATCAAGTTGTGGAACACGCTCGGCGAGTGC
AAGTACACGATTCAAGAGGGAGACGCTCACACTGAGTGGGTTTCTTGTGT
TAGGTTCAGCCCCAACACGCTTCAGCCCACTATCGTTTCCGCCTCGTGGG
ACCGTACGGTCAAAGTGTGGAATTTGAGCAACTGCAAGCTTAGGGCTACT
CTTGCCGGGCACACTGGATACGTGAACACCGTCGCAGTGTCGCCGGATGG
TTCGTTGTGTGCCAGTGGAGGGAAAGATGGTGTGATTCTGTTGTGGGATT
TGGCTGAGGGAAAAAGACTCTACTCGCTCGACGCTGGTGCTGTCATTCAC
GCGCTCTGCTTCAGTCCTAATAGGTATTGGTTGTGTGCGGCGACTGAGCA
GAGTATAAAGATCTGGGATTTGGAGAGCAAGAGCATTGTCGAGGATCTTA
AGGTTGATCTTAAGACCGAGGCCGAGAAATCTGAGGCCACCACCGCCACC
ACCACCATAAAAAAGAAGAACATTTACTGCACAAGCTTGAACTGGAGTGT
TGATGGAAGCACCTTGTTCAGTGGTTATACAGATGGTGTGATCAGAGTCT
GGGGTATTGGCCGTTATTGAAAACTGCTTGAGTAATTGCAAAATGCTGTT
CTTTTTCGATTACAAACTAGTTTCTCGACTTTGTAGGCAGTTTCAAACCT
ATTTAGAATTTAAGAATTTTGTTCAAAATGGTTTTAAGGATATTTTGTTC
TCCTTTTTTTGGAATCTAAATTGGCTTTTGAGGGCCCCGGGGGTTTGGGT
TTGGGTTTATTAATTTTAAATGGTGGAAAATTTAAAAA
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