EY688405

Overview
NameEY688405
Unique NameEY688405
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length838
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY688405 vs. ExPASy Swiss-Prot
Match: KTNB1_HUMAN (Katanin p80 WD40-containing subunit B1 OS=Homo sapiens GN=KATNB1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.588e-12
Identity = 45/142 (31.69%), Postives = 78/142 (54.93%), Query Frame = 3
Query:    6 SRDRTIKLWNTLGE-CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSPNRYWLCAATEQSIKIWDLE 425
            S+D  IKLW+   + C +  +    H++ V C+RFSP+     + SA+ D TVK+W+L+  K+ +   GHTG VN V   P+  L ASG  D  I  WDL + + +  ++     + ++ F+P+   L +  + S++++  E
Sbjct:  124 SQDTNIKLWDIRRKGCVFRYR---GHSQAVRCLRFSPDG--KWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDSLRVYGWE 260          
BLAST of EY688405 vs. ExPASy Swiss-Prot
Match: WDR48_DANRE (WD repeat-containing protein 48 OS=Danio rerio GN=wdr48 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.073e-12
Identity = 61/217 (28.11%), Postives = 95/217 (43.78%), Query Frame = 3
Query:    3 ASRDRTIKLW--NTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYW-----------LCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR 614
            A RD  I++W  N   +  Y I   + HT+WV+ +    N    T++SAS D TVKVWN       +TL  H  YV  +A + D  L AS G D  I LWD+     L + +      +L  + +  +           +  +TE+ +++WD  + + +  LK                      N+    LN   DG+   SG +DG IR+W +G+
Sbjct:   48 AGRDSIIRIWSVNQHKQDPY-IASMEHHTDWVNDIILCCNG--KTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQTGTVIISGSTEKVLRVWDPRTCAKLMKLK------------------GHTDNVKSLLLN--RDGTQCLSGSSDGTIRLWSLGQ 241          
BLAST of EY688405 vs. ExPASy Swiss-Prot
Match: LIS1_DROME (Lissencephaly-1 homolog OS=Drosophila melanogaster GN=Lis-1 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.073e-12
Identity = 57/223 (25.56%), Postives = 97/223 (43.50%), Query Frame = 3
Query:    3 ASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTI-VSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPD--------------------GSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSP-NRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVW 602
            ASRDRTIK+W       Y ++    H EWV  VR     ++ +I  + S D+T++VW  ++   +  L  H   V  +A +P+                    G   ASG +D  I +WD++ G  L +L      +  L F P  +Y + A+ +++I++WDL +K  ++ L                         +CTS+++      + SG  D  ++VW
Sbjct:  211 ASRDRTIKMWEVA--TGYCVKTYTGHREWVRMVRVH---IEGSIFATCSNDQTIRVWLTNSKDCKVELRDHEHTVECIAWAPEAAASAINEAAGADNKKGHHQGPFLASGSRDKTIRIWDVSVGLCLLTLSGHDNWVRGLAFHPGGKYLVSASDDKTIRVWDLRNKRCMKTL--------------------YAHQHFCTSIDFHKAHPYVISGSVDQTVKVW 408          
BLAST of EY688405 vs. ExPASy Swiss-Prot
Match: TAF5_MOUSE (Transcription initiation factor TFIID subunit 5 OS=Mus musculus GN=Taf5 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.708e-12
Identity = 57/203 (28.08%), Postives = 89/203 (43.84%), Query Frame = 3
Query:    3 ASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK--RLYSLDAGAVIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVW 602
            +S D T++LW+          +G  +  W +  +FSP       VS   DR  ++W   + +     AGH   VN     P+ +  A+G  D  + LWD+  G   R+++   G  IH+L FSPN R+    AT+  + +WD+    +V +LK                      +  C SL +S DG  L SG  D  +R+W
Sbjct:  562 SSEDGTVRLWSLQTFTCLVGYKGHNYPVWDT--QFSPYGYY--FVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRYHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGP-IHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELK-------------------GHTDTVC-SLRFSRDGEILASGSMDNTVRLW 739          

HSP 2 Score: 70.8626 bits (172), Expect = 1.029e-11
Identity = 46/151 (30.46%), Postives = 77/151 (50.99%), Query Frame = 3
Query:   12 DRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGA-VIHALCFSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVD 458
            DR  +LW T       I  G  H   V+C R+ PN+    + + S DRTV++W++ N        GH G ++++  SP+G   A+G  DG +LLWD+  G  +  L      + +L FS +   L + + + ++++WD  +    EDL+ D
Sbjct:  607 DRVARLWATDHYQPLRIFAG--HLADVNCTRYHPNSNY--VATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWD--AVKAFEDLETD 751          
BLAST of EY688405 vs. ExPASy Swiss-Prot
Match: TAF5_HUMAN (Transcription initiation factor TFIID subunit 5 OS=Homo sapiens GN=TAF5 PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 2.708e-12
Identity = 57/203 (28.08%), Postives = 89/203 (43.84%), Query Frame = 3
Query:    3 ASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK--RLYSLDAGAVIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVW 602
            +S D T++LW+          +G  +  W +  +FSP       VS   DR  ++W   + +     AGH   VN     P+ +  A+G  D  + LWD+  G   R+++   G  IH+L FSPN R+    AT+  + +WD+    +V +LK                      +  C SL +S DG  L SG  D  +R+W
Sbjct:  561 SSEDGTVRLWSLQTFTCLVGYKGHNYPVWDT--QFSPYGYY--FVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGP-IHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELK-------------------GHTDTVC-SLRFSRDGEILASGSMDNTVRLW 738          

HSP 2 Score: 71.633 bits (174), Expect = 6.033e-12
Identity = 47/151 (31.13%), Postives = 77/151 (50.99%), Query Frame = 3
Query:   12 DRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGA-VIHALCFSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVD 458
            DR  +LW T       I  G  H   V+C RF PN+    + + S DRTV++W++ N        GH G ++++  SP+G   A+G  DG +LLWD+  G  +  L      + +L FS +   L + + + ++++WD  +    EDL+ D
Sbjct:  606 DRVARLWATDHYQPLRIFAG--HLADVNCTRFHPNSNY--VATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWD--AIKAFEDLETD 750          
BLAST of EY688405 vs. ExPASy Swiss-Prot
Match: LIS1_RAT (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Rattus norvegicus GN=Pafah1b1 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.708e-12
Identity = 56/222 (25.23%), Postives = 95/222 (42.79%), Query Frame = 3
Query:    3 ASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPD--------------------GSLCASGGKDGVILLWDLAEGKRLYSL--DAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVW 602
            ASRD+TIK+W    +  Y ++    H EWV  VR  PN     I S S D+TV+VW ++  + +A L  H   V  ++ +P+                    G    SG +D  I +WD++ G  L +L      V   L  S  ++ L  A ++++++WD ++K  ++ L                         + TSL++      + +G  D  ++VW
Sbjct:  210 ASRDKTIKMWEV--QTGYCVKTFTGHREWVRMVR--PNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA--------------------HEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407          
BLAST of EY688405 vs. ExPASy Swiss-Prot
Match: LIS1_PONAB (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Pongo abelii GN=PAFAH1B1 PE=2 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 2.708e-12
Identity = 56/222 (25.23%), Postives = 95/222 (42.79%), Query Frame = 3
Query:    3 ASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPD--------------------GSLCASGGKDGVILLWDLAEGKRLYSL--DAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVW 602
            ASRD+TIK+W    +  Y ++    H EWV  VR  PN     I S S D+TV+VW ++  + +A L  H   V  ++ +P+                    G    SG +D  I +WD++ G  L +L      V   L  S  ++ L  A ++++++WD ++K  ++ L                         + TSL++      + +G  D  ++VW
Sbjct:  210 ASRDKTIKMWEV--QTGYCVKTFTGHREWVRMVR--PNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA--------------------HEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407          
BLAST of EY688405 vs. ExPASy Swiss-Prot
Match: LIS1_MOUSE (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Mus musculus GN=Pafah1b1 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.708e-12
Identity = 56/222 (25.23%), Postives = 95/222 (42.79%), Query Frame = 3
Query:    3 ASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPD--------------------GSLCASGGKDGVILLWDLAEGKRLYSL--DAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVW 602
            ASRD+TIK+W    +  Y ++    H EWV  VR  PN     I S S D+TV+VW ++  + +A L  H   V  ++ +P+                    G    SG +D  I +WD++ G  L +L      V   L  S  ++ L  A ++++++WD ++K  ++ L                         + TSL++      + +G  D  ++VW
Sbjct:  210 ASRDKTIKMWEV--QTGYCVKTFTGHREWVRMVR--PNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA--------------------HEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407          
BLAST of EY688405 vs. ExPASy Swiss-Prot
Match: LIS1_MACFA (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Macaca fascicularis GN=PAFAH1B1 PE=2 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 2.708e-12
Identity = 56/222 (25.23%), Postives = 95/222 (42.79%), Query Frame = 3
Query:    3 ASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPD--------------------GSLCASGGKDGVILLWDLAEGKRLYSL--DAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVW 602
            ASRD+TIK+W    +  Y ++    H EWV  VR  PN     I S S D+TV+VW ++  + +A L  H   V  ++ +P+                    G    SG +D  I +WD++ G  L +L      V   L  S  ++ L  A ++++++WD ++K  ++ L                         + TSL++      + +G  D  ++VW
Sbjct:  210 ASRDKTIKMWEV--QTGYCVKTFTGHREWVRMVR--PNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA--------------------HEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407          
BLAST of EY688405 vs. ExPASy Swiss-Prot
Match: LIS1_HUMAN (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Homo sapiens GN=PAFAH1B1 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.708e-12
Identity = 56/222 (25.23%), Postives = 95/222 (42.79%), Query Frame = 3
Query:    3 ASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPD--------------------GSLCASGGKDGVILLWDLAEGKRLYSL--DAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVW 602
            ASRD+TIK+W    +  Y ++    H EWV  VR  PN     I S S D+TV+VW ++  + +A L  H   V  ++ +P+                    G    SG +D  I +WD++ G  L +L      V   L  S  ++ L  A ++++++WD ++K  ++ L                         + TSL++      + +G  D  ++VW
Sbjct:  210 ASRDKTIKMWEV--QTGYCVKTFTGHREWVRMVR--PNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA--------------------HEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407          
The following BLAST results are available for this feature:
BLAST of EY688405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
KTNB1_HUMAN1.588e-1231.69Katanin p80 WD40-containing subunit B1 OS=Homo sap... [more]
WDR48_DANRE2.073e-1228.11WD repeat-containing protein 48 OS=Danio rerio GN=... [more]
LIS1_DROME2.073e-1225.56Lissencephaly-1 homolog OS=Drosophila melanogaster... [more]
TAF5_MOUSE2.708e-1228.08Transcription initiation factor TFIID subunit 5 OS... [more]
TAF5_HUMAN2.708e-1228.08Transcription initiation factor TFIID subunit 5 OS... [more]
LIS1_RAT2.708e-1225.23Platelet-activating factor acetylhydrolase IB subu... [more]
LIS1_PONAB2.708e-1225.23Platelet-activating factor acetylhydrolase IB subu... [more]
LIS1_MOUSE2.708e-1225.23Platelet-activating factor acetylhydrolase IB subu... [more]
LIS1_MACFA2.708e-1225.23Platelet-activating factor acetylhydrolase IB subu... [more]
LIS1_HUMAN2.708e-1225.23Platelet-activating factor acetylhydrolase IB subu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-070-C11-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY688405 ID=EY688405; Name=EY688405; organism=Citrus sinensis; type=EST; length=838bp
CGGCCTCTCGTGACCGTACGATCAAGTTGTGGAACACGCTCGGCGAGTGC
AAGTACACGATTCAAGAGGGAGACGCTCACACTGAGTGGGTTTCTTGTGT
TAGGTTCAGCCCCAACACGCTTCAGCCCACTATCGTTTCCGCCTCGTGGG
ACCGTACGGTCAAAGTGTGGAATTTGAGCAACTGCAAGCTTAGGGCTACT
CTTGCCGGGCACACTGGATACGTGAACACCGTCGCAGTGTCGCCGGATGG
TTCGTTGTGTGCCAGTGGAGGGAAAGATGGTGTGATTCTGTTGTGGGATT
TGGCTGAGGGAAAAAGACTCTACTCGCTCGACGCTGGTGCTGTCATTCAC
GCGCTCTGCTTCAGTCCTAATAGGTATTGGTTGTGTGCGGCGACTGAGCA
GAGTATAAAGATCTGGGATTTGGAGAGCAAGAGCATTGTCGAGGATCTTA
AGGTTGATCTTAAGACCGAGGCCGAGAAATCTGAGGCCACCACCGCCACC
ACCACCATAAAAAAGAAGAACATTTACTGCACAAGCTTGAACTGGAGTGT
TGATGGAAGCACCTTGTTCAGTGGTTATACAGATGGTGTGATCAGAGTCT
GGGGTATTGGCCGTTATTGAAAACTGCTTGAGTAATTGCAAAATGCTGTT
CTTTTTCGATTACAAACTAGTTTCTCGACTTTGTAGGCAGTTTCAAACCT
ATTTAGAATTTAAGAATTTTGTTCAAAATGGTTTTAAGGATATTTTGTTC
TCCTTTTTTTGGAATCTAAATTGGCTTTTGAGGGCCCCGGGGGTTTGGGT
TTGGGTTTATTAATTTTAAATGGTGGAAAATTTAAAAA
back to top