EY688405
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY688405 vs. ExPASy Swiss-Prot
Match: KTNB1_HUMAN (Katanin p80 WD40-containing subunit B1 OS=Homo sapiens GN=KATNB1 PE=1 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.588e-12 Identity = 45/142 (31.69%), Postives = 78/142 (54.93%), Query Frame = 3 Query: 6 SRDRTIKLWNTLGE-CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSPNRYWLCAATEQSIKIWDLE 425 S+D IKLW+ + C + + H++ V C+RFSP+ + SA+ D TVK+W+L+ K+ + GHTG VN V P+ L ASG D I WDL + + + ++ + ++ F+P+ L + + S++++ E Sbjct: 124 SQDTNIKLWDIRRKGCVFRYR---GHSQAVRCLRFSPDG--KWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDSLRVYGWE 260
BLAST of EY688405 vs. ExPASy Swiss-Prot
Match: WDR48_DANRE (WD repeat-containing protein 48 OS=Danio rerio GN=wdr48 PE=2 SV=2) HSP 1 Score: 73.1738 bits (178), Expect = 2.073e-12 Identity = 61/217 (28.11%), Postives = 95/217 (43.78%), Query Frame = 3 Query: 3 ASRDRTIKLW--NTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYW-----------LCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVWGIGR 614 A RD I++W N + Y I + HT+WV+ + N T++SAS D TVKVWN +TL H YV +A + D L AS G D I LWD+ L + + +L + + + + +TE+ +++WD + + + LK N+ LN DG+ SG +DG IR+W +G+ Sbjct: 48 AGRDSIIRIWSVNQHKQDPY-IASMEHHTDWVNDIILCCNG--KTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQTGTVIISGSTEKVLRVWDPRTCAKLMKLK------------------GHTDNVKSLLLN--RDGTQCLSGSSDGTIRLWSLGQ 241
BLAST of EY688405 vs. ExPASy Swiss-Prot
Match: LIS1_DROME (Lissencephaly-1 homolog OS=Drosophila melanogaster GN=Lis-1 PE=1 SV=2) HSP 1 Score: 73.1738 bits (178), Expect = 2.073e-12 Identity = 57/223 (25.56%), Postives = 97/223 (43.50%), Query Frame = 3 Query: 3 ASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTI-VSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPD--------------------GSLCASGGKDGVILLWDLAEGKRLYSLDA-GAVIHALCFSP-NRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVW 602 ASRDRTIK+W Y ++ H EWV VR ++ +I + S D+T++VW ++ + L H V +A +P+ G ASG +D I +WD++ G L +L + L F P +Y + A+ +++I++WDL +K ++ L +CTS+++ + SG D ++VW Sbjct: 211 ASRDRTIKMWEVA--TGYCVKTYTGHREWVRMVRVH---IEGSIFATCSNDQTIRVWLTNSKDCKVELRDHEHTVECIAWAPEAAASAINEAAGADNKKGHHQGPFLASGSRDKTIRIWDVSVGLCLLTLSGHDNWVRGLAFHPGGKYLVSASDDKTIRVWDLRNKRCMKTL--------------------YAHQHFCTSIDFHKAHPYVISGSVDQTVKVW 408
BLAST of EY688405 vs. ExPASy Swiss-Prot
Match: TAF5_MOUSE (Transcription initiation factor TFIID subunit 5 OS=Mus musculus GN=Taf5 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.708e-12 Identity = 57/203 (28.08%), Postives = 89/203 (43.84%), Query Frame = 3 Query: 3 ASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK--RLYSLDAGAVIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVW 602 +S D T++LW+ +G + W + +FSP VS DR ++W + + AGH VN P+ + A+G D + LWD+ G R+++ G IH+L FSPN R+ AT+ + +WD+ +V +LK + C SL +S DG L SG D +R+W Sbjct: 562 SSEDGTVRLWSLQTFTCLVGYKGHNYPVWDT--QFSPYGYY--FVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRYHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGP-IHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELK-------------------GHTDTVC-SLRFSRDGEILASGSMDNTVRLW 739 HSP 2 Score: 70.8626 bits (172), Expect = 1.029e-11 Identity = 46/151 (30.46%), Postives = 77/151 (50.99%), Query Frame = 3 Query: 12 DRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGA-VIHALCFSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVD 458 DR +LW T I G H V+C R+ PN+ + + S DRTV++W++ N GH G ++++ SP+G A+G DG +LLWD+ G + L + +L FS + L + + + ++++WD + EDL+ D Sbjct: 607 DRVARLWATDHYQPLRIFAG--HLADVNCTRYHPNSNY--VATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWD--AVKAFEDLETD 751
BLAST of EY688405 vs. ExPASy Swiss-Prot
Match: TAF5_HUMAN (Transcription initiation factor TFIID subunit 5 OS=Homo sapiens GN=TAF5 PE=1 SV=3) HSP 1 Score: 72.7886 bits (177), Expect = 2.708e-12 Identity = 57/203 (28.08%), Postives = 89/203 (43.84%), Query Frame = 3 Query: 3 ASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK--RLYSLDAGAVIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVW 602 +S D T++LW+ +G + W + +FSP VS DR ++W + + AGH VN P+ + A+G D + LWD+ G R+++ G IH+L FSPN R+ AT+ + +WD+ +V +LK + C SL +S DG L SG D +R+W Sbjct: 561 SSEDGTVRLWSLQTFTCLVGYKGHNYPVWDT--QFSPYGYY--FVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGP-IHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELK-------------------GHTDTVC-SLRFSRDGEILASGSMDNTVRLW 738 HSP 2 Score: 71.633 bits (174), Expect = 6.033e-12 Identity = 47/151 (31.13%), Postives = 77/151 (50.99%), Query Frame = 3 Query: 12 DRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGA-VIHALCFSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVD 458 DR +LW T I G H V+C RF PN+ + + S DRTV++W++ N GH G ++++ SP+G A+G DG +LLWD+ G + L + +L FS + L + + + ++++WD + EDL+ D Sbjct: 606 DRVARLWATDHYQPLRIFAG--HLADVNCTRFHPNSNY--VATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWD--AIKAFEDLETD 750
BLAST of EY688405 vs. ExPASy Swiss-Prot
Match: LIS1_RAT (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Rattus norvegicus GN=Pafah1b1 PE=1 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 2.708e-12 Identity = 56/222 (25.23%), Postives = 95/222 (42.79%), Query Frame = 3 Query: 3 ASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPD--------------------GSLCASGGKDGVILLWDLAEGKRLYSL--DAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVW 602 ASRD+TIK+W + Y ++ H EWV VR PN I S S D+TV+VW ++ + +A L H V ++ +P+ G SG +D I +WD++ G L +L V L S ++ L A ++++++WD ++K ++ L + TSL++ + +G D ++VW Sbjct: 210 ASRDKTIKMWEV--QTGYCVKTFTGHREWVRMVR--PNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA--------------------HEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407
BLAST of EY688405 vs. ExPASy Swiss-Prot
Match: LIS1_PONAB (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Pongo abelii GN=PAFAH1B1 PE=2 SV=3) HSP 1 Score: 72.7886 bits (177), Expect = 2.708e-12 Identity = 56/222 (25.23%), Postives = 95/222 (42.79%), Query Frame = 3 Query: 3 ASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPD--------------------GSLCASGGKDGVILLWDLAEGKRLYSL--DAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVW 602 ASRD+TIK+W + Y ++ H EWV VR PN I S S D+TV+VW ++ + +A L H V ++ +P+ G SG +D I +WD++ G L +L V L S ++ L A ++++++WD ++K ++ L + TSL++ + +G D ++VW Sbjct: 210 ASRDKTIKMWEV--QTGYCVKTFTGHREWVRMVR--PNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA--------------------HEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407
BLAST of EY688405 vs. ExPASy Swiss-Prot
Match: LIS1_MOUSE (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Mus musculus GN=Pafah1b1 PE=1 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 2.708e-12 Identity = 56/222 (25.23%), Postives = 95/222 (42.79%), Query Frame = 3 Query: 3 ASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPD--------------------GSLCASGGKDGVILLWDLAEGKRLYSL--DAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVW 602 ASRD+TIK+W + Y ++ H EWV VR PN I S S D+TV+VW ++ + +A L H V ++ +P+ G SG +D I +WD++ G L +L V L S ++ L A ++++++WD ++K ++ L + TSL++ + +G D ++VW Sbjct: 210 ASRDKTIKMWEV--QTGYCVKTFTGHREWVRMVR--PNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA--------------------HEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407
BLAST of EY688405 vs. ExPASy Swiss-Prot
Match: LIS1_MACFA (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Macaca fascicularis GN=PAFAH1B1 PE=2 SV=3) HSP 1 Score: 72.7886 bits (177), Expect = 2.708e-12 Identity = 56/222 (25.23%), Postives = 95/222 (42.79%), Query Frame = 3 Query: 3 ASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPD--------------------GSLCASGGKDGVILLWDLAEGKRLYSL--DAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVW 602 ASRD+TIK+W + Y ++ H EWV VR PN I S S D+TV+VW ++ + +A L H V ++ +P+ G SG +D I +WD++ G L +L V L S ++ L A ++++++WD ++K ++ L + TSL++ + +G D ++VW Sbjct: 210 ASRDKTIKMWEV--QTGYCVKTFTGHREWVRMVR--PNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA--------------------HEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407
BLAST of EY688405 vs. ExPASy Swiss-Prot
Match: LIS1_HUMAN (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Homo sapiens GN=PAFAH1B1 PE=1 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 2.708e-12 Identity = 56/222 (25.23%), Postives = 95/222 (42.79%), Query Frame = 3 Query: 3 ASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPD--------------------GSLCASGGKDGVILLWDLAEGKRLYSL--DAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVW 602 ASRD+TIK+W + Y ++ H EWV VR PN I S S D+TV+VW ++ + +A L H V ++ +P+ G SG +D I +WD++ G L +L V L S ++ L A ++++++WD ++K ++ L + TSL++ + +G D ++VW Sbjct: 210 ASRDKTIKMWEV--QTGYCVKTFTGHREWVRMVR--PNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA--------------------HEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407 The following BLAST results are available for this feature:
BLAST of EY688405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 145
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >EY688405 ID=EY688405; Name=EY688405; organism=Citrus sinensis; type=EST; length=838bpback to top |