EY728372

Overview
NameEY728372
Unique NameEY728372
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig819 contig Csv1_Contig819:382..1174. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY728372 vs. ExPASy Swiss-Prot
Match: MTNA_ACAM1 (Methylthioribose-1-phosphate isomerase OS=Acaryochloris marina (strain MBIC 11017) GN=mtnA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.477e-12
Identity = 53/169 (31.36%), Postives = 83/169 (49.11%), Query Frame = 3
Query:  294 VLKMAAQNKKLFRVLCTEGRPDRSGLRLAN-ELAKLDVPVKLLIDSAVAYTMDE--VDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAE----SYKFARLYPLDQKDMGPA-LRPIDFGVPIPSKVEVETSARDYTPPQYLTLLFTDLGVLTPSVVSDEL 776
            V++ A    +L RV   E RP   G +L   E  + ++PV L+ D   A+ M +  +D+V VGAD +  +G   N +GTY +AL A + N P YVAA      +  A    +  ++  P+ +  I      P  VE    A D TP + +T + T+ GV  P  + ++L
Sbjct:  181 VVRSAWTAGRLARVYADETRPRLQGAKLTTWECVQEEIPVTLISDGMAAHCMQQNLIDVVVVGADRIAANGDAANKIGTYSVALCAKAHNLPFYVAAPLSTIDFDLADGGGIPIEERHPSEIYQIGTTDICPKGVEFYNPAFDVTPAELITGIITEHGVFAPGDIREKL 349          
BLAST of EY728372 vs. ExPASy Swiss-Prot
Match: MTNA_SYNP2 (Methylthioribose-1-phosphate isomerase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=mtnA PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 7.154e-12
Identity = 52/173 (30.06%), Postives = 84/173 (48.55%), Query Frame = 3
Query:  294 VLKMAAQNKKLFRVLCTEGRPDRSGLRLAN-ELAKLDVPVKLLIDSAVAYTMDE--VDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAE------SYKFARLYPLDQKDMGPALRPIDFGVPIPSKVEVETSARDYTPPQYLTLLFTDLGVLTPSVVSDELIPL 785
            V++ A +  +L  V   E RP   G +L   E  +  +PV  + D+  A+ M +  +D V VGAD +  +G   N +GTY +A+VA + N P +VAA       S    +  P++++D     +  D  +  P  V+    A D TP   +T + T+ G + P    D+LI L
Sbjct:  177 VIRSAWRENRLGMVYADETRPRLQGSKLTTWECVQEGIPVTQICDNMAAHCMQQGRIDAVVVGADRITANGDAANKIGTYSLAIVAKAHNVPFFVAAPLSTVDFSLSDGKQIPIEERDPKEVYQIGDTRI-CPEGVQFYNPAFDVTPAHLITAIITEKGAVAP----DQLIHL 344          
BLAST of EY728372 vs. ExPASy Swiss-Prot
Match: MTNA_RAT (Methylthioribose-1-phosphate isomerase OS=Rattus norvegicus GN=Mri1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.154e-12
Identity = 75/256 (29.30%), Postives = 109/256 (42.58%), Query Frame = 3
Query:   63 TSISLTAGCDLFMRYVTRTSALEYEDFNSARSRLIERAEKFGEISYKARKIIAMLSQDFIFDGC-------TILVH---------GFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRL-ANELAKLDVPVKLLIDSAVAYTM--DEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFARLYPLDQK---DMGPALRPIDF-GVPIPSK-VEVETSARDYTPPQYLT-LLFTDLGVLTP 755
            T++++            R + LE     + R R+I  AE   E   K  + I  L    + +         T+L H         G+    + V++   +  +L    CTE RP   G RL A EL    +P  L+ DS  A  M    V  V VGAD VV +G   N +GTYQ+A+VA     P YVAA S          ++   +  P+    D  GV I ++ + V   A D TP + +T  + T+LGV  P
Sbjct:   92 TAVNMARAARDLTHMAAREAELEGATEETVRERVIRFAEDMLEKDLKDNRSIGDLGARHLLEQTNPRGGKVTVLTHCNTGALATAGYG-TALGVIRSLHEMGRLEHTFCTETRPYNQGARLTAFELVYEKIPATLITDSMAAAAMVHQGVSAVVVGADRVVANGDTANKIGTYQLAIVAKHHGIPFYVAAPSSSCDLRLETGKEIVIEERPSQELTDLNGVRIAAQGIRVWNPAFDVTPHELITGGIITELGVFAP 346          
BLAST of EY728372 vs. ExPASy Swiss-Prot
Match: MTNA_PELPD (Methylthioribose-1-phosphate isomerase OS=Pelobacter propionicus (strain DSM 2379) GN=mtnA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.154e-12
Identity = 62/219 (28.31%), Postives = 98/219 (44.75%), Query Frame = 3
Query:  153 RSRLIERAEKFGEISYKARKIIAMLSQDFIFDGCTILVH---------GFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRL-ANELAKLDVPVKLLIDSAVAYTMD--EVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAE------SYKFARLYPLDQK--DMGPALRPIDFGVPIPSKVEVETSARDYTPPQYLTLLFTDLGVL 749
            R  L E A +  E      + I       I +G T+L H         G+    + V++ A +  K  +V   E RP   G RL A EL K  +P  L+ D+   + M   E+    VGAD +  +G   N +GTY +A++A   N P YVAA       S       P++++  +    +R +D     P+ V V   A D TP +Y++ + T+ G++
Sbjct:  118 RQLLKEEAIRVEEEDLTICRNIGKWGATLIPEGATVLTHCNAGGLATAGYG-TALGVIRAAHEAGKKIQVFADETRPWLQGARLTAWELVKEGIPATLISDNMAGFFMSRGEITCCVVGADRIAANGDTANKIGTYSVAVLAKENNIPFYVAAPISTLDLSLCDGGKIPIEERPAEEVTCIRGVDIA---PAGVRVRNPAFDVTPARYISAIITENGIV 332          
BLAST of EY728372 vs. ExPASy Swiss-Prot
Match: MTNA_THENN (Methylthioribose-1-phosphate isomerase OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=mtnA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.343e-12
Identity = 62/215 (28.84%), Postives = 95/215 (44.19%), Query Frame = 3
Query:  162 LIERAEKFGEISYKARKIIAMLSQDFIFDGCTILVHGFSRVV--------MEVLKMAAQNKKLFRVLCTEGRPDRSGLRL-ANELAKLDVPVKLLIDSAVAYTMDE--VDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAA------ESYKFARLYPLDQKDMGPALRPIDFGVPIPSKVEVETSARDYTPPQYLTLLFTDLGVLTP 755
            L E A K  +   +  + I     + I DG TIL H  +  +        + V++ A +  K  RV   E RP   G RL A EL K  + V ++ D+   + M    +D V VGAD +  +G   N +GTY +A++A   N P YVAA       + K     P++++     +         P  V+V   A D T    +T + T+ GV+ P
Sbjct:  118 LEEEAMKMAQEDIETNRAIGRNGAELIEDGSTILTHCNAGALATVDYGTALGVIRAAVEAGKRVRVFADETRPYLQGARLTAWELMKDGIEVYVITDNMAGWLMKRGMIDAVVVGADRIALNGDTANKIGTYSLAVLAKRNNVPFYVAAPISTIDPTIKSGDEIPIEER-RAEEVTHCGGNRIAPEGVKVLNPAFDVTENSLITAIITEKGVIKP 331          
BLAST of EY728372 vs. ExPASy Swiss-Prot
Match: MTNA_RHOBA (Methylthioribose-1-phosphate isomerase OS=Rhodopirellula baltica GN=mtnA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.343e-12
Identity = 53/151 (35.10%), Postives = 73/151 (48.34%), Query Frame = 3
Query:  333 VLCTEGRPDRSGLRL-ANELAKLDVPVKLLIDSAVAYTMDE--VDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKF------ARLYPLDQKDMGPALRPIDFGVP--IPSKVEVETSARDYTPPQYLTLLFTDLGVLT 752
            V   E RP   G RL A EL +  +PV +  DS     M +  VD V VGAD +  +G + N +GTY +A++A   N P YVAA +  F        L P++Q+       P     P   P  V V   A D TP + +T L T+ GV++
Sbjct:  193 VFADETRPLLQGARLTAWELHQAGIPVTVCTDSMSGSLMRQGRVDAVIVGADRIAANGDVANKIGTYPLAVLAKYHNIPFYVAAPTNTFDSELESGDLIPIEQRSADEVSYPCGTDSPRQTPEGVAVVNPAFDVTPAELVTALITEKGVIS 343          
BLAST of EY728372 vs. ExPASy Swiss-Prot
Match: MTNA_PECCP (Methylthioribose-1-phosphate isomerase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=mtnA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.343e-12
Identity = 58/171 (33.92%), Postives = 82/171 (47.95%), Query Frame = 3
Query:  294 VLKMAAQNKKLFRVLCTEGRPDRSGLRL-ANELAKLDVPVKLLIDSAVAYTM--DEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAA------ESYKFARLYPLDQKDMGPALRPI-DFG--VPIPSKVEVETSARDYTPPQYLTLLFTDLGVLTPSVVSD 770
            VL  A Q  K+ +V   E RP   G RL A EL +L +P +L+ DS  A  M   +VD ++VGAD +  +G + N +GTY +A++AH    P YVAA       +    R  P++Q+           FG     P    V   A D TP   ++    D GV+TP  V +
Sbjct:  164 VLLRAHQQGKVTQVWVDETRPLLQGGRLTAWELGELGIPYQLICDSMAASLMAQGQVDAIWVGADRIAANGDVANKIGTYSLAVLAHYHQIPFYVAAPHTTHDPACPDGRAIPIEQRAAAEVTGVSGSFGHCQWAPQNAAVYNPAFDVTPAALISGWVLDTGVVTPQDVKE 334          
BLAST of EY728372 vs. ExPASy Swiss-Prot
Match: MTNA_DESDA (Methylthioribose-1-phosphate isomerase OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=mtnA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.343e-12
Identity = 65/201 (32.34%), Postives = 91/201 (45.27%), Query Frame = 3
Query:  240 IFDGCTILVH---------GFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRL-ANELAKLDVPVKLLIDSAVAYTMDE--VDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFARLYPLDQKDMGPALRPIDFGVPIPSKVEVETS-----------------ARDYTPPQYLTLLFTDLGVLTP 755
            I DG  +L H         G+    + V++ A +  K   V+  E RP   G RL A EL +  +PV +  D+A A  M    V  V VGAD +  +G   N +GTY +AL+A   + P YVAA         PL   D  PA  P   G+PI  + E+E +                 A D TP +Y++ + T+ GVL P
Sbjct:  147 IEDGDCVLTHCNAGALATAGYG-TALGVIRAAVEAGKKVSVIADETRPFLQGARLTAWELERDGIPVTVACDNACALLMSRGLVQRVVVGADRIAANGDTANKIGTYGVALLARHFHIPFYVAA---------PLSTID--PA-TPDGAGIPIEERPELEVTHMGETRLCPENVPVLNFAFDVTPAEYISGIITEKGVLYP 334          
BLAST of EY728372 vs. ExPASy Swiss-Prot
Match: MTNA_CHLSY (Methylthioribose-1-phosphate isomerase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=mtnA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.343e-12
Identity = 55/172 (31.98%), Postives = 84/172 (48.84%), Query Frame = 3
Query:  270 GFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRL-ANELAKLDVPVKLLIDSAVAYTMD--EVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKF------ARLYPLDQKDMGPALRPIDFGVPI-PSKVEVETSARDYTPPQYLTLLFTDLGVLTP 755
            G+   +  +    AQ + +  V   E RP   G RL A EL +  +P  L+ D+  A+ M   ++D V VGAD +  +G + N +GTY +A++A   N P YVAA S             P++++D  PA      GV I P  V     A D TP + +T + T+ G++ P
Sbjct:  166 GYGTALAPIRTAFAQGRPV-HVFVDETRPFLQGARLTAWELLQAGIPQTLITDNMAAFMMQRGQIDCVIVGADRIAANGDVANKIGTYGLAVLARYHNIPFYVAAPSSTIDLATASGADIPIEERD--PAEVTHIAGVAIAPQGVRAAHPAFDVTPNELVTAIITERGIVRP 334          
BLAST of EY728372 vs. ExPASy Swiss-Prot
Match: MTNA_CHLAA (Methylthioribose-1-phosphate isomerase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=mtnA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.343e-12
Identity = 55/172 (31.98%), Postives = 84/172 (48.84%), Query Frame = 3
Query:  270 GFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRL-ANELAKLDVPVKLLIDSAVAYTMD--EVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKF------ARLYPLDQKDMGPALRPIDFGVPI-PSKVEVETSARDYTPPQYLTLLFTDLGVLTP 755
            G+   +  +    AQ + +  V   E RP   G RL A EL +  +P  L+ D+  A+ M   ++D V VGAD +  +G + N +GTY +A++A   N P YVAA S             P++++D  PA      GV I P  V     A D TP + +T + T+ G++ P
Sbjct:  166 GYGTALAPIRTAFAQGRPV-HVFVDETRPFLQGARLTAWELLQAGIPQTLITDNMAAFMMQRGQIDCVIVGADRIAANGDVANKIGTYGLAVLARYHNIPFYVAAPSSTIDLATASGADIPIEERD--PAEVTHIAGVAIAPQGVRAAHPAFDVTPNELVTAIITERGIVRP 334          
The following BLAST results are available for this feature:
BLAST of EY728372 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
MTNA_ACAM15.477e-1231.36Methylthioribose-1-phosphate isomerase OS=Acaryoch... [more]
MTNA_SYNP27.154e-1230.06Methylthioribose-1-phosphate isomerase OS=Synechoc... [more]
MTNA_RAT7.154e-1229.30Methylthioribose-1-phosphate isomerase OS=Rattus n... [more]
MTNA_PELPD7.154e-1228.31Methylthioribose-1-phosphate isomerase OS=Pelobact... [more]
MTNA_THENN9.343e-1228.84Methylthioribose-1-phosphate isomerase OS=Thermoto... [more]
MTNA_RHOBA9.343e-1235.10Methylthioribose-1-phosphate isomerase OS=Rhodopir... [more]
MTNA_PECCP9.343e-1233.92Methylthioribose-1-phosphate isomerase OS=Pectobac... [more]
MTNA_DESDA9.343e-1232.34Methylthioribose-1-phosphate isomerase OS=Desulfov... [more]
MTNA_CHLSY9.343e-1231.98Methylthioribose-1-phosphate isomerase OS=Chlorofl... [more]
MTNA_CHLAA9.343e-1231.98Methylthioribose-1-phosphate isomerase OS=Chlorofl... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-002-H05-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728372 ID=EY728372; Name=EY728372; organism=Citrus sinensis; type=EST; length=793bp
CCACGCGTCCGCTTCCAGTCAAAATGACTATCCCTTTGCGTGTTTCCCAG
TCTTGGGACACGACATCTATTTCGCTGACAGCAGGCTGTGACCTGTTCAT
GCGATACGTTACCAGAACTTCAGCTTTAGAATATGAGGATTTTAATTCAG
CTAGATCTCGATTGATTGAACGTGCAGAGAAGTTTGGAGAGATATCTTAT
AAGGCACGAAAGATCATTGCAATGCTTAGTCAAGATTTTATATTTGATGG
TTGTACTATTTTGGTGCACGGCTTTTCCAGAGTTGTCATGGAAGTACTGA
AGATGGCAGCACAAAATAAGAAACTCTTTAGAGTTCTCTGCACAGAGGGA
AGGCCAGACAGATCAGGACTAAGATTGGCCAATGAGCTGGCCAAACTTGA
TGTTCCAGTGAAGCTCCTAATAGATTCTGCAGTTGCATATACAATGGACG
AAGTGGATATGGTATTTGTTGGAGCAGATGGAGTGGTCGAAAGTGGAGGC
ATTATTAACATGATGGGTACTTACCAGATTGCATTGGTTGCACACAGCAT
GAACAAACCAGTTTATGTGGCAGCTGAGAGCTACAAGTTTGCTCGTCTTT
ATCCATTGGACCAGAAAGACATGGGTCCTGCTTTACGCCCCATTGATTTT
GGGGTACCCATACCATCCAAGGTTGAAGTTGAGACATCTGCTCGGGATTA
TACTCCTCCACAATATCTTACTCTGCTATTCACAGATTTAGGTGTCCTTA
CTCCATCTGTAGTTAGTGATGAGCTTATTCCGCTTTACTGGTT
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