EY711435

Overview
NameEY711435
Unique NameEY711435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length914
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711435 vs. ExPASy Swiss-Prot
Match: UXS1_XENTR (UDP-glucuronic acid decarboxylase 1 OS=Xenopus tropicalis GN=uxs1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.405e-13
Identity = 49/169 (28.99%), Postives = 84/169 (49.70%), Query Frame = 1
Query:   49 NTMISFNMLEASRISGVKRFFYASSACIYPEFKQLETNVSLKESDAW----PAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDKFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIV 543
            NT+ + NML  ++  G  R   AS++ +Y +       V  +  + W    P  P+  Y   K  +E +C  Y K  G+E RV R  N +GP      GR    + F  +AL   ++  ++G G QTR+F ++ + V G++ L  S+   PVN+G+ +  S+ + A ++
Sbjct:  180 NTIGTLNMLGLAKRVGA-RLLLASTSEVYGD-----PEVHPQSEEYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGR--VVSNFILQALQG-EQLTVYGSGEQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPQEHSIVQFARLI 339          

HSP 2 Score: 25.7942 bits (55), Expect = 2.405e-13
Identity = 9/27 (33.33%), Postives = 17/27 (62.96%), Query Frame = 2
Query:  641 LGWAPSMKLKDGLRITYFWIKDQIEKE 721
            LGW P + L++GL  T  + + ++E +
Sbjct:  373 LGWEPVVPLEEGLNKTIHYFRKELEHQ 399          
BLAST of EY711435 vs. ExPASy Swiss-Prot
Match: UXS1_DANRE (UDP-glucuronic acid decarboxylase 1 OS=Danio rerio GN=uxs1 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 3.674e-13
Identity = 64/223 (28.70%), Postives = 105/223 (47.09%), Query Frame = 1
Query:   49 NTMISFNMLEASRISGVKRFFYASSACIYPEFKQLETNVSLKESDAW----PAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDKFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIVLSFEDKKLPIHHIPGPEGVRGRNSDNTPDQREAWLGTINEVEGWAENYIFLDQG 705
            NT+ + NML  ++  G  R   AS++ +Y +       V  +  D W    P  P+  Y   K  +E +C  Y K  G+E RV R  N +G       GR    + F  +AL   +   ++G G QTR+F ++ + V G++ L  S+   PVN+G+ E  ++ E A+++ S    +  I  +P  +    R     PD R+A L     + GW E  + L++G
Sbjct:  177 NTIGTLNMLGLAKRVGA-RLLLASTSEVYGD-----PEVHPQNEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGSRMHMNDGR--VVSNFILQALQG-EALTVYGSGSQTRAFQYVSDLVNGLVSLMNSNISSPVNLGNPEEHTILEFAQLIKSLVASRSHIQFLPEAQDDPQR---RRPDIRKAKL-----LLGW-EPVVPLEEG 381          
BLAST of EY711435 vs. ExPASy Swiss-Prot
Match: GALE_METJA (Putative UDP-glucose 4-epimerase OS=Methanocaldococcus jannaschii GN=MJ0211 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 6.911e-13
Identity = 50/166 (30.12%), Postives = 80/166 (48.19%), Query Frame = 1
Query:   49 NTMISFNMLEASRISGVKRFFYASSA-CIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDKFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIV 543
            N + + N+LE  R   + +  +ASS   +Y E   L  +      +  P  P   YGL K   EE  K Y + +GIE  + R+ N+YG     K G     + F  K L +     ++GDG QTR F ++ +  +  L +  +   E VNIG+ +  S+NE+ +I+
Sbjct:   91 NVLGTINILEMMRKYDIDKIVFASSGGAVYGEPNYLPVD------ENHPINPLSPYGLSKYVGEEYIKLYNRLYGIEYAILRYSNVYGERQDPK-GEAGVISIFIDKMLKNQSPI-IFGDGNQTRDFVYVGDVAKANL-MALNWKNEIVNIGTGKETSVNELFDII 247          

HSP 2 Score: 29.261 bits (64), Expect = 6.911e-13
Identity = 10/24 (41.67%), Postives = 16/24 (66.67%), Query Frame = 2
Query:  635 EKLGWAPSMKLKDGLRITYFWIKD 706
            E LGW P + LK+G++    W+K+
Sbjct:  278 ESLGWKPEIDLKEGIKRVVNWMKN 301          
BLAST of EY711435 vs. ExPASy Swiss-Prot
Match: FCL2_ORYSJ (Putative GDP-L-fucose synthase 2 OS=Oryza sativa subsp. japonica GN=Os06g0652300 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.381e-12
Identity = 62/238 (26.05%), Postives = 107/238 (44.96%), Query Frame = 1
Query:    1 GGMCFIQSNHSVIMYNNTMISFNMLEASRISG-VKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAA----FCRKALTSTDKFEMWGDGLQTRSFTFIDECVEGVLRL-TKSDFREPVNIGSDEMVSMNEMAEIVLSFED-KKLPIHHIPGPEGVRGRNSDNTPDQREAWLGTINEVEGWAENYIF 693
            GG+    +  +  +  N  I+ N+++A+R  G V++    +S+ IYP      T  S   +   PAE  + Y + K+A  ++C+    ++G++      +N+YGP   +         A    F R  L    +  +WG G   R FT +D+  E V+ L  +    E VN+GS E V++ E+AE V      + +       PEGV  R  D+   ++  W   +   +G  + Y F
Sbjct:   98 GGVHASSAAPAEYLTENLRITVNVVDAARRCGSVRKLLVLASSTIYPADAPQPTPESALLTGP-PAEGSEWYAIPKIAGIKMCQAVRAEYGLDAIAAAPNNLYGPRHPFPPEHSHVIPALIRRFHRAKLEGAGEVAVWGSGAAAREFTHVDDLAEAVVVLMERYSGEEHVNVGSGEEVTVRELAEAVRGVVGYEGVVAWDAARPEGVARRVVDSGRMRKLGWEPRVALRDGIQDLYRF 334          
BLAST of EY711435 vs. ExPASy Swiss-Prot
Match: FCL1_ARATH (GDP-L-fucose synthase 1 OS=Arabidopsis thaliana GN=GER1 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.182e-11
Identity = 56/227 (24.67%), Postives = 99/227 (43.61%), Query Frame = 1
Query:   49 NTMISFNMLEASRISGVKRFFYASSACIYPEF------KQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRK----ALTSTDKFEMWGDGLQTRSFTFIDECVEG-VLRLTKSDFREPVNIGSDEMVSMNEMAEI---VLSFEDKKLPIHHIPGPEGVRGRNSDNTPDQREAWLGTINEVEGWAENY 687
            N  I  N++ ++   GVK+  +  S+CIYP+F      +      SL+ ++ W       Y + K+A  + C+ Y    G +   G   N+YGP   +         A  R+     +   ++  +WG G   R F  +D+  +  V  L +    E VNIGS + V++ E+AE+   V+ FE K         P+G   +  D++      W   ++  +G ++ Y
Sbjct:   85 NLQIQTNVIHSAYEHGVKKLLFLGSSCIYPKFAPQPIPESALLTASLEPTNEW-------YAIAKIAGIKTCQAYRIQHGWDAISGMPTNLYGPNDNFHPENSHVLPALMRRFHEAKVNGAEEVVVWGTGSPLREFLHVDDLADACVFLLDRYSGLEHVNIGSGQEVTIRELAELVKEVVGFEGKL--GWDCTKPDGTPRKLMDSSKLASLGWTPKVSLRDGLSQTY 302          
BLAST of EY711435 vs. ExPASy Swiss-Prot
Match: FCL1_ORYSJ (Probable GDP-L-fucose synthase 1 OS=Oryza sativa subsp. japonica GN=Os06g0652400 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.439e-11
Identity = 57/225 (25.33%), Postives = 101/225 (44.89%), Query Frame = 1
Query:   49 NTMISFNMLEAS-RISGVKRFFYASSACIYPEF--KQLETNVSLKESDAWPAEP-QDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRK----ALTSTDKFEMWGDGLQTRSFTFIDECVEGVLRLTKS-DFREPVNIGSDEMVSMNEMAEI---VLSFEDKKLPIHHIPGPEGVRGRNSDNTPDQREAWLGTINEVEGWAENY 687
            N  I  N+++A+ +   V++  +  S+CIYP+F  + +  N  L    + P EP  + Y + K+A  ++C+ Y    G +       N+YGP   +         A  R+      ++  +  +WG G   R F  +D+  + V+ L       E VN+GS   V++ E+AE+   V+ F+ K   +     P+G   +  D++  Q   W   +   EG  E Y
Sbjct:   98 NLQIQTNVVDAALKCGSVRKLLFLGSSCIYPKFAPQPIPENSLL----SGPLEPTNEWYAVAKIAGIKMCQAYRIQHGFDAISAMPTNLYGPQDNFHPENSHVLPALIRRFHEAKASNAAEVVVWGTGSPLREFLHVDDLADAVIFLMDHYSGLEHVNVGSGSEVTIKELAELVKEVVGFQGKL--VWDSSKPDGTPRKLMDSSKIQEMGWKPKVPLKEGLVETY 316          
The following BLAST results are available for this feature:
BLAST of EY711435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
UXS1_XENTR2.405e-1328.99UDP-glucuronic acid decarboxylase 1 OS=Xenopus tro... [more]
UXS1_DANRE3.674e-1328.70UDP-glucuronic acid decarboxylase 1 OS=Danio rerio... [more]
GALE_METJA6.911e-1330.12Putative UDP-glucose 4-epimerase OS=Methanocaldoco... [more]
FCL2_ORYSJ2.381e-1226.05Putative GDP-L-fucose synthase 2 OS=Oryza sativa s... [more]
FCL1_ARATH1.182e-1124.67GDP-L-fucose synthase 1 OS=Arabidopsis thaliana GN... [more]
FCL1_ORYSJ3.439e-1125.33Probable GDP-L-fucose synthase 1 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-007-F09-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711435 ID=EY711435; Name=EY711435; organism=Citrus sinensis; type=EST; length=914bp
GGTGGTATGTGCTTTATTCAGTCCAACCACTCTGTTATCATGTATAACAA
TACCATGATCAGCTTCAACATGCTTGAGGCTTCTAGGATCAGTGGAGTAA
AGAGGTTTTTCTATGCCTCCAGTGCCTGCATCTATCCCGAATTTAAGCAG
CTGGAAACTAACGTAAGCTTGAAGGAGTCTGATGCCTGGCCCGCTGAGCC
TCAAGATGCTTATGGCTTGGAGAAGCTTGCAAGTGAGGAGTTGTGTAAGC
ACTACACGAAAGACTTTGGAATTGAGTGTCGTGTTGGAAGATTCCACAAT
ATTTATGGGCCTTTTGGAACATGGAAAGGTGGAAGGGAAAAAGCTCCTGC
TGCTTTTTGCCGAAAGGCTCTTACTTCAACTGACAAGTTTGAGATGTGGG
GAGATGGACTTCAAACTCGATCTTTCACCTTCATTGATGAATGTGTTGAA
GGTGTGCTCAGATTGACGAAGTCAGACTTCCGTGAGCCAGTGAACATTGG
TAGTGATGAGATGGTTAGCATGAATGAGATGGCTGAGATTGTTCTTAGCT
TTGAGGACAAGAAGCTACCTATCCACCACATTCCTGGCCCTGAGGGTGTC
CGCGGTCGTAATTCAGACAACACACCTGATCAAAGAGAAGCTTGGTTGGG
CACCATCAATGAAGTTGAAGGATGGGCTGAGAATTACATATTTCTGGATC
AAGGACCAGATTGAGAAGGAGAAGACCTCAGGTATTGACCTATCTGTTTA
TGGATCATCCCAGGTGGGTAGGAACTCAAGCTCCAGTTCAGTTAAGCTCC
CTTCTTGCTTCTTGATGCAAAAAATGAAATGGTTGAACCTCCTGATATTG
CCCTCACAAAACCATGTTTTATTATGCTATTTCTAGCAATCTTATTCCTG
GGTGCTTATGAATA
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