EY711434
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: RBMS3_PONAB (RNA-binding motif, single-stranded-interacting protein 3 OS=Pongo abelii GN=RBMS3 PE=2 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 9.451e-17 Identity = 50/168 (29.76%), Postives = 85/168 (50.60%), Query Frame = 2 Query: 161 SGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNG 664 S N + +SG Q T+LY+ L TD L L G+++S + D +T + GYG+V++ +PA A +A+ L + + + +DP+ N++I NL S+D + L + FG+++S +I D +G S+G GF + E+ E + I NG Sbjct: 43 SSSNNSSNNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAK--QQEQDPT-------NLYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNG 201
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: RBMS3_HUMAN (RNA-binding motif, single-stranded-interacting protein 3 OS=Homo sapiens GN=RBMS3 PE=1 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 9.451e-17 Identity = 50/168 (29.76%), Postives = 85/168 (50.60%), Query Frame = 2 Query: 161 SGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNG 664 S N + +SG Q T+LY+ L TD L L G+++S + D +T + GYG+V++ +PA A +A+ L + + + +DP+ N++I NL S+D + L + FG+++S +I D +G S+G GF + E+ E + I NG Sbjct: 44 SSSNNSSNNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAK--QQEQDPT-------NLYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNG 202
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: SHEP_DROMO (Protein alan shepard OS=Drosophila mojavensis GN=shep PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 2.750e-16 Identity = 52/175 (29.71%), Postives = 82/175 (46.86%), Query Frame = 2 Query: 164 GPNGVAAGAS---GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNK--SIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI 673 GPNG A + G Q T+LY+ L TD L ++ +Q G ++S + D +T + GYG+V++ PA A A+ L + + + I HR ++ N++I NL L + FG ++S +I D SKG GF + E++E + I NG I Sbjct: 210 GPNGTAQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLINMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAYAEGAVKGLQAKGVQAQMAKVGIWVLHRPAIQQEQDPTNLYIANLPPHFKETDLEAMLAKFGQVVSTRILRDQQMNSKGVGFARMESREKCEQIIQMFNGNTI 384
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: RBMS3_MOUSE (RNA-binding motif, single-stranded-interacting protein 3 OS=Mus musculus GN=Rbms3 PE=2 SV=2) HSP 1 Score: 86.2705 bits (212), Expect = 2.750e-16 Identity = 48/162 (29.63%), Postives = 84/162 (51.85%), Query Frame = 2 Query: 179 AAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNG 664 ++ +SG Q T+LY+ L TD L L G+++S + D +T + GYG+V++ +PA A +A+ L + + + +DP+ N++I NL S+D + L + FG+++S +I D +G S+G GF + E+ E + I NG Sbjct: 45 SSNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAK--QQEQDPT-------NLYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNG 197
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: TIAR_HUMAN (Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 6.126e-16 Identity = 53/170 (31.18%), Postives = 90/170 (52.94%), Query Frame = 2 Query: 215 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGN---IFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVGHFLRK 712 +LYVG+L +VT+ + LFSQ+G S ++ + ++ Y +V + DAA AL +N + K +++ ++ PS +K T N +F+ +L I + + F+ FG I ++ D +G+SKG+GFV F NK A+NAI + G + +Q+ RK Sbjct: 10 TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRK 176 HSP 2 Score: 76.2554 bits (186), Expect = 2.846e-13 Identity = 47/172 (27.33%), Postives = 80/172 (46.51%), Query Frame = 2 Query: 218 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGN--------------------IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI 673 ++VGDL +T + F+ G++ RV +D++T +S GYG+V++ N DA A+ + L + IR ++ R P KS N ++ + + + + TFS FG I+ ++ + KG+ FV+F ESA +AI +NG I Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTI 265
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: SHEP_DROWI (Protein alan shepard OS=Drosophila willistoni GN=shep PE=3 SV=2) HSP 1 Score: 85.1149 bits (209), Expect = 6.126e-16 Identity = 52/175 (29.71%), Postives = 81/175 (46.29%), Query Frame = 2 Query: 164 GPNGVAA-----GASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI 673 GPNG A G G Q T+LY+ L TD L ++ +Q G ++S + D +T + GYG+V++ PA A A+ L + + + +DP+ N++I NL L S +G ++S +I D SKG GF + E++E + I NG I Sbjct: 216 GPNGTAQNQNQQGGGGEQLSKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAYAENAVKGLQAKGVQAQMAK--QQEQDPT-------NLYIANLPPHFKETDLEAMLSKYGQVVSTRILRDQQMNSKGVGFARMESREKCEQIIQMFNGNTI 381
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.365e-15 Identity = 51/173 (29.48%), Postives = 88/173 (50.87%), Query Frame = 2 Query: 218 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY----SHRDPSIRKSG---------TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVV 694 ++VG+L F+ + L +LF + G V V V D T RS G+G+V ++ + A N L+ +++R+ R+ S + G + +++ NL +D AL FS G ++ K+ D SG+S+GFGFV + + E NAI+ L+G+ +N + + V Sbjct: 89 IFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRV 261
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 5.186e-15 Identity = 52/179 (29.05%), Postives = 89/179 (49.72%), Query Frame = 2 Query: 218 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----------MYSHRDPSIRKSG---------TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVV 694 ++VG+L F+ + L +LF + G V V V D T RS G+G+V ++ + A N L+ +++R+ S R+ S + G + +++ NL +D AL FS G ++ K+ D SG+S+GFGFV + + E NAI+ L+G+ +N + + V Sbjct: 89 IFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRV 267
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: TIAR_MOUSE (Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 6.773e-15 Identity = 54/185 (29.19%), Postives = 90/185 (48.65%), Query Frame = 2 Query: 215 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLG---------------YGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGN---IFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVGHFLRK 712 +LYVG+L +VT+ + LFSQ+G S ++ + R + Y +V + DAA AL +N + K +++ ++ PS +K T N +F+ +L I + + F+ FG I ++ D +G+SKG+GFV F NK A+NAI + G + +Q+ RK Sbjct: 10 TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRK 193 HSP 2 Score: 73.9442 bits (180), Expect = 1.412e-12 Identity = 46/172 (26.74%), Postives = 79/172 (45.93%), Query Frame = 2 Query: 218 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKS--------------------GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI 673 ++VGDL +T + F+ G++ RV +D++T +S GYG+V++ N DA A+ + L + IR ++ R P KS ++ + + + + TFS FG I+ ++ + KG+ FV+F ESA +AI +NG I Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTI 282
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: SHEP_DROVI (Protein alan shepard OS=Drosophila virilis GN=shep PE=3 SV=2) HSP 1 Score: 81.6481 bits (200), Expect = 6.773e-15 Identity = 50/173 (28.90%), Postives = 81/173 (46.82%), Query Frame = 2 Query: 164 GPNGVAAGAS---GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI 673 GPNG A + G Q T+LY+ L TD L ++ +Q G ++S + D +T + GYG+V++ PA A A+ L + + + +DP+ N++I NL L + +G ++S +I D SKG GF + E++E + I NG I Sbjct: 224 GPNGTAQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLINMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAYAEGAVKGLQAKGVQAQMAK--QQEQDPT-------NLYIANLPPHFKETDLEAMLAKYGQVVSTRILRDQQMNSKGVGFARMESREKCEQIIQMFNGNTI 387 The following BLAST results are available for this feature:
BLAST of EY711434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 168
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >EY711434 ID=EY711434; Name=EY711434; organism=Citrus sinensis; type=EST; length=927bpback to top |