EY711434

Overview
NameEY711434
Unique NameEY711434
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length927
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: RBMS3_PONAB (RNA-binding motif, single-stranded-interacting protein 3 OS=Pongo abelii GN=RBMS3 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 9.451e-17
Identity = 50/168 (29.76%), Postives = 85/168 (50.60%), Query Frame = 2
Query:  161 SGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNG 664
            S  N  +  +SG Q   T+LY+  L    TD  L  L    G+++S +   D +T +  GYG+V++ +PA A +A+  L    +  +  +     +DP+       N++I NL  S+D + L +    FG+++S +I  D +G S+G GF + E+ E  +  I   NG
Sbjct:   43 SSSNNSSNNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAK--QQEQDPT-------NLYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNG 201          
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: RBMS3_HUMAN (RNA-binding motif, single-stranded-interacting protein 3 OS=Homo sapiens GN=RBMS3 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 9.451e-17
Identity = 50/168 (29.76%), Postives = 85/168 (50.60%), Query Frame = 2
Query:  161 SGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNG 664
            S  N  +  +SG Q   T+LY+  L    TD  L  L    G+++S +   D +T +  GYG+V++ +PA A +A+  L    +  +  +     +DP+       N++I NL  S+D + L +    FG+++S +I  D +G S+G GF + E+ E  +  I   NG
Sbjct:   44 SSSNNSSNNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAK--QQEQDPT-------NLYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNG 202          
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: SHEP_DROMO (Protein alan shepard OS=Drosophila mojavensis GN=shep PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.750e-16
Identity = 52/175 (29.71%), Postives = 82/175 (46.86%), Query Frame = 2
Query:  164 GPNGVAAGAS---GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNK--SIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI 673
            GPNG A   +   G Q   T+LY+  L    TD  L ++ +Q G ++S +   D +T +  GYG+V++  PA A  A+  L    +  +   + I   HR    ++    N++I NL        L    + FG ++S +I  D    SKG GF + E++E  +  I   NG  I
Sbjct:  210 GPNGTAQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLINMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAYAEGAVKGLQAKGVQAQMAKVGIWVLHRPAIQQEQDPTNLYIANLPPHFKETDLEAMLAKFGQVVSTRILRDQQMNSKGVGFARMESREKCEQIIQMFNGNTI 384          
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: RBMS3_MOUSE (RNA-binding motif, single-stranded-interacting protein 3 OS=Mus musculus GN=Rbms3 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.750e-16
Identity = 48/162 (29.63%), Postives = 84/162 (51.85%), Query Frame = 2
Query:  179 AAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNG 664
            ++ +SG Q   T+LY+  L    TD  L  L    G+++S +   D +T +  GYG+V++ +PA A +A+  L    +  +  +     +DP+       N++I NL  S+D + L +    FG+++S +I  D +G S+G GF + E+ E  +  I   NG
Sbjct:   45 SSNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAK--QQEQDPT-------NLYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNG 197          
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: TIAR_HUMAN (Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.126e-16
Identity = 53/170 (31.18%), Postives = 90/170 (52.94%), Query Frame = 2
Query:  215 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGN---IFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVGHFLRK 712
            +LYVG+L  +VT+  +  LFSQ+G   S ++  + ++     Y +V +    DAA AL  +N   +  K +++ ++   PS +K  T N   +F+ +L   I  + +   F+ FG I   ++  D  +G+SKG+GFV F NK  A+NAI  + G  +  +Q+      RK
Sbjct:   10 TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRK 176          

HSP 2 Score: 76.2554 bits (186), Expect = 2.846e-13
Identity = 47/172 (27.33%), Postives = 80/172 (46.51%), Query Frame = 2
Query:  218 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGN--------------------IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI 673
            ++VGDL   +T   +   F+  G++   RV +D++T +S GYG+V++ N  DA  A+  +    L  + IR  ++ R P   KS   N                    ++   +   +  + +  TFS FG I+  ++  +     KG+ FV+F   ESA +AI  +NG  I
Sbjct:   99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTI 265          
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: SHEP_DROWI (Protein alan shepard OS=Drosophila willistoni GN=shep PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 6.126e-16
Identity = 52/175 (29.71%), Postives = 81/175 (46.29%), Query Frame = 2
Query:  164 GPNGVAA-----GASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI 673
            GPNG A      G  G Q   T+LY+  L    TD  L ++ +Q G ++S +   D +T +  GYG+V++  PA A  A+  L    +  +  +     +DP+       N++I NL        L    S +G ++S +I  D    SKG GF + E++E  +  I   NG  I
Sbjct:  216 GPNGTAQNQNQQGGGGEQLSKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAYAENAVKGLQAKGVQAQMAK--QQEQDPT-------NLYIANLPPHFKETDLEAMLSKYGQVVSTRILRDQQMNSKGVGFARMESREKCEQIIQMFNGNTI 381          
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.365e-15
Identity = 51/173 (29.48%), Postives = 88/173 (50.87%), Query Frame = 2
Query:  218 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY----SHRDPSIRKSG---------TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVV 694
            ++VG+L F+   + L +LF + G V  V V  D  T RS G+G+V  ++  +   A    N   L+ +++R+        R+ S  + G         +  +++ NL   +D  AL   FS  G ++  K+  D  SG+S+GFGFV + + E   NAI+ L+G+ +N + + V
Sbjct:   89 IFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRV 261          
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.186e-15
Identity = 52/179 (29.05%), Postives = 89/179 (49.72%), Query Frame = 2
Query:  218 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----------MYSHRDPSIRKSG---------TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVV 694
            ++VG+L F+   + L +LF + G V  V V  D  T RS G+G+V  ++  +   A    N   L+ +++R+            S R+ S  + G         +  +++ NL   +D  AL   FS  G ++  K+  D  SG+S+GFGFV + + E   NAI+ L+G+ +N + + V
Sbjct:   89 IFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRV 267          
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: TIAR_MOUSE (Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.773e-15
Identity = 54/185 (29.19%), Postives = 90/185 (48.65%), Query Frame = 2
Query:  215 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLG---------------YGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGN---IFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVGHFLRK 712
            +LYVG+L  +VT+  +  LFSQ+G   S ++  +    R +                Y +V +    DAA AL  +N   +  K +++ ++   PS +K  T N   +F+ +L   I  + +   F+ FG I   ++  D  +G+SKG+GFV F NK  A+NAI  + G  +  +Q+      RK
Sbjct:   10 TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRK 193          

HSP 2 Score: 73.9442 bits (180), Expect = 1.412e-12
Identity = 46/172 (26.74%), Postives = 79/172 (45.93%), Query Frame = 2
Query:  218 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKS--------------------GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI 673
            ++VGDL   +T   +   F+  G++   RV +D++T +S GYG+V++ N  DA  A+  +    L  + IR  ++ R P   KS                        ++   +   +  + +  TFS FG I+  ++  +     KG+ FV+F   ESA +AI  +NG  I
Sbjct:  116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTI 282          
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: SHEP_DROVI (Protein alan shepard OS=Drosophila virilis GN=shep PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 6.773e-15
Identity = 50/173 (28.90%), Postives = 81/173 (46.82%), Query Frame = 2
Query:  164 GPNGVAAGAS---GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI 673
            GPNG A   +   G Q   T+LY+  L    TD  L ++ +Q G ++S +   D +T +  GYG+V++  PA A  A+  L    +  +  +     +DP+       N++I NL        L    + +G ++S +I  D    SKG GF + E++E  +  I   NG  I
Sbjct:  224 GPNGTAQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLINMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAYAEGAVKGLQAKGVQAQMAK--QQEQDPT-------NLYIANLPPHFKETDLEAMLAKYGQVVSTRILRDQQMNSKGVGFARMESREKCEQIIQMFNGNTI 387          
The following BLAST results are available for this feature:
BLAST of EY711434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 168
Match NameE-valueIdentityDescription
RBMS3_PONAB9.451e-1729.76RNA-binding motif, single-stranded-interacting pro... [more]
RBMS3_HUMAN9.451e-1729.76RNA-binding motif, single-stranded-interacting pro... [more]
SHEP_DROMO2.750e-1629.71Protein alan shepard OS=Drosophila mojavensis GN=s... [more]
RBMS3_MOUSE2.750e-1629.63RNA-binding motif, single-stranded-interacting pro... [more]
TIAR_HUMAN6.126e-1631.18Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=... [more]
SHEP_DROWI6.126e-1629.71Protein alan shepard OS=Drosophila willistoni GN=s... [more]
ROC1_NICSY1.365e-1529.4829 kDa ribonucleoprotein A, chloroplastic OS=Nicot... [more]
ROC1_NICPL5.186e-1529.0530 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
TIAR_MOUSE6.773e-1529.19Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=... [more]
SHEP_DROVI6.773e-1528.90Protein alan shepard OS=Drosophila virilis GN=shep... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-007-F08-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711434 ID=EY711434; Name=EY711434; organism=Citrus sinensis; type=EST; length=927bp
CCACGCGTCCGATAGAATCAGATTATTTATCCTGTTATCTCTCTAGATTT
TTATTTGAGAACTAGCAAGAGAAGAGGGAAATAAAAAAGCCAAAAAAAAA
AAGAAGGATCTAGAAGTGGTAGTGATGGCACAGATTCAGGTGCAACATCA
AGCGCAAATGTCGGGGCCAAACGGAGTGGCGGCGGGTGCGTCAGGGAACC
AGTTCCTAACGACGTCTCTTTATGTTGGCGATCTCGATTTCAACGTGACC
GATTCGCAGCTTTATGATCTGTTCAGCCAGGTCGGTCAAGTTCTGTCGGT
TAGGGTTTGTCGGGACCTGAGCACCAGGCGCTCACTCGGCTATGGTTACG
TTAACTACGCCAACCCTGCAGATGCGGCAAGGGCACTGGATGTTCTTAAC
TTCACTCCACTTAATAATAAGTCCATTAGAATCATGTATTCCCATCGGGA
TCCTAGTATTCGGAAAAGCGGTACTGGGAACATATTTATCAAGAATTTGG
ACAAGTCTATTGATCACAAAGCATTACACGATACATTTTCTTCATTCGGA
AACATTCTTTCTTGTAAGATAGCTACTGATGGTTCTGGCCAGTCCAAAGG
TTTCGGTTTTGTGCAATTTGAGAACAAAGAATCTGCTCAAAATGCTATTG
ATAAGTTAAATGGCATGCTTATTAATGATAAACAAGTNGTTGTTGGGCAC
TTTCTTCGTAAGCAGGAAAGAGAACTGTAGCAATTAAAACAAATTTCATA
ACGTATTTGTCAAAACCTTGCTGAGTCACTACAGATGAAGATTTGAAGAA
ATTTTTGGTGAGTATGGAACATTACANTGCANTANTGATGAGGGATGGAG
ATGGAAAATCCAGTGTTTTGGATTTGTGATTTTTGAAATGCAAATGATGC
TGCCAAGCTGTGGAGCTCTTATGGAAA
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