EY711434

Overview
NameEY711434
Unique NameEY711434
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length927
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: SHEP_DROGR (Protein alan shepard OS=Drosophila grimshawi GN=shep PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.773e-15
Identity = 50/173 (28.90%), Postives = 81/173 (46.82%), Query Frame = 2
Query:  164 GPNGVAAGAS---GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI 673
            GPNG A   +   G Q   T+LY+  L    TD  L ++ +Q G ++S +   D +T +  GYG+V++  PA A  A+  L    +  +  +     +DP+       N++I NL        L    + +G ++S +I  D    SKG GF + E++E  +  I   NG  I
Sbjct:  238 GPNGTAQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLINMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAYAEGAVKGLQAKGVQAQMAK--QQEQDPT-------NLYIANLPPHFKETDLEAMLAKYGQVVSTRILRDQQMNSKGVGFARMESREKCEQIIQMFNGNTI 401          
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.773e-15
Identity = 45/164 (27.44%), Postives = 87/164 (53.05%), Query Frame = 2
Query:  218 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSH---------RDPSIRKSGTG------NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLN 661
            LYVG+L F++T SQL ++F++ G V +V +  D  T RS G+ +V   +  +A  A+ + + + +  +++++ +               IR +  G       +++ NL  ++  + L D F+     +S K+  D  SG+S+GFGF+ F + E+  +A+D +N
Sbjct:  116 LYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMN 279          
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: SHEP_DROYA (Protein alan shepard OS=Drosophila yakuba GN=shep PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.509e-14
Identity = 50/173 (28.90%), Postives = 80/173 (46.24%), Query Frame = 2
Query:  164 GPNGVAAGAS---GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI 673
            GPNG     +   G Q   T+LY+  L    TD  L ++ +Q G ++S +   D +T +  GYG+V++  PA A  A+  L    +  +  +     +DP+       N++I NL        L    S +G ++S +I  D    SKG GF + E++E  +  I   NG  I
Sbjct:  212 GPNGTVQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVKGLQGKGVQAQMAK--QQEQDPT-------NLYIANLPPHFKETDLEAMLSKYGQVVSTRILRDQQMNSKGVGFARMESREKCEQIIQMFNGNTI 375          
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: SHEP_DROSE (Protein alan shepard OS=Drosophila sechellia GN=shep PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.509e-14
Identity = 50/173 (28.90%), Postives = 80/173 (46.24%), Query Frame = 2
Query:  164 GPNGVAAGAS---GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI 673
            GPNG     +   G Q   T+LY+  L    TD  L ++ +Q G ++S +   D +T +  GYG+V++  PA A  A+  L    +  +  +     +DP+       N++I NL        L    S +G ++S +I  D    SKG GF + E++E  +  I   NG  I
Sbjct:  212 GPNGTVQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVKGLQGKGVQAQMAK--QQEQDPT-------NLYIANLPPHFKETDLEAMLSKYGQVVSTRILRDQQMNSKGVGFARMESREKCEQIIQMFNGNTI 375          
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: SHEP_DROME (Protein alan shepard OS=Drosophila melanogaster GN=shep PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.509e-14
Identity = 50/173 (28.90%), Postives = 80/173 (46.24%), Query Frame = 2
Query:  164 GPNGVAAGAS---GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI 673
            GPNG     +   G Q   T+LY+  L    TD  L ++ +Q G ++S +   D +T +  GYG+V++  PA A  A+  L    +  +  +     +DP+       N++I NL        L    S +G ++S +I  D    SKG GF + E++E  +  I   NG  I
Sbjct:  212 GPNGTVQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVKGLQGKGVQAQMAK--QQEQDPT-------NLYIANLPPHFKETDLEAMLSKYGQVVSTRILRDQQMNSKGVGFARMESREKCEQIIQMFNGNTI 375          
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: SHEP_DROER (Protein alan shepard OS=Drosophila erecta GN=shep PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.509e-14
Identity = 50/173 (28.90%), Postives = 80/173 (46.24%), Query Frame = 2
Query:  164 GPNGVAAGAS---GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI 673
            GPNG     +   G Q   T+LY+  L    TD  L ++ +Q G ++S +   D +T +  GYG+V++  PA A  A+  L    +  +  +     +DP+       N++I NL        L    S +G ++S +I  D    SKG GF + E++E  +  I   NG  I
Sbjct:  212 GPNGTVQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVKGLQGKGVQAQMAK--QQEQDPT-------NLYIANLPPHFKETDLEAMLSKYGQVVSTRILRDQQMNSKGVGFARMESREKCEQIIQMFNGNTI 375          
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: TIA1_MOUSE (Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.362e-14
Identity = 52/181 (28.73%), Postives = 91/181 (50.28%), Query Frame = 2
Query:  215 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGN--------------IFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVGHFLRK 712
            +LYVG+L  +VT++ +  LFSQ+G   + ++  D  T  +  Y +V +     AA AL  +N   +  K +++ ++   PS +K  T +              +F+ +L   I  + +   F+ FG I   ++  D  +G+SKG+GFV F NK  A+NAI ++ G  +  +Q+      RK
Sbjct:    8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWA-TTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185          

HSP 2 Score: 77.0258 bits (188), Expect = 1.668e-13
Identity = 47/172 (27.33%), Postives = 80/172 (46.51%), Query Frame = 2
Query:  218 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKS--------------------GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI 673
            ++VGDL   +T   +   F+  G++   RV +D++T +S GYG+V++ N  DA  A+  +    L  + IR  ++ R P   KS                        ++   +   +  + +  TFS FG I+  ++  D     KG+ FV+F + ESA +AI  +NG  I
Sbjct:  108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD-----KGYSFVRFSSHESAAHAIVSVNGTTI 274          
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: TIA1_HUMAN (Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 3.362e-14
Identity = 52/181 (28.73%), Postives = 91/181 (50.28%), Query Frame = 2
Query:  215 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGN--------------IFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVGHFLRK 712
            +LYVG+L  +VT++ +  LFSQ+G   + ++  D  T  +  Y +V +     AA AL  +N   +  K +++ ++   PS +K  T +              +F+ +L   I  + +   F+ FG I   ++  D  +G+SKG+GFV F NK  A+NAI ++ G  +  +Q+      RK
Sbjct:    8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWA-TTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185          

HSP 2 Score: 77.0258 bits (188), Expect = 1.668e-13
Identity = 47/172 (27.33%), Postives = 80/172 (46.51%), Query Frame = 2
Query:  218 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKS--------------------GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI 673
            ++VGDL   +T   +   F+  G++   RV +D++T +S GYG+V++ N  DA  A+  +    L  + IR  ++ R P   KS                        ++   +   +  + +  TFS FG I+  ++  D     KG+ FV+F + ESA +AI  +NG  I
Sbjct:  108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD-----KGYSFVRFNSHESAAHAIVSVNGTTI 274          
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: FCA_ARATH (Flowering time control protein FCA OS=Arabidopsis thaliana GN=FCA PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.390e-14
Identity = 50/155 (32.26%), Postives = 78/155 (50.32%), Query Frame = 2
Query:  209 TTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVL-NFTPLNNKSIRIMYSHRDPSIRKSGT--GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNG 664
            T  L+VG +    T+ ++   F Q G VL V + +D  T +  G  +V YA   DA RA+  L N   L   +  +   + D    + GT    +F+ +L+K    K + + F  FG++    +  D   QS+G GFV++ +KE+A  AID LNG
Sbjct:  119 TVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNG 273          
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: SHEP_DROAN (Protein alan shepard OS=Drosophila ananassae GN=shep PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 5.734e-14
Identity = 51/175 (29.14%), Postives = 81/175 (46.29%), Query Frame = 2
Query:  164 GPNGVAAGAS---GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNK--SIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI 673
            GPNG A   +   G Q   T+LY+  L    TD  L ++ +Q G ++S +   D +T +   YG+V++  PA A  A+  L    +  +   + I   HR    ++    N++I NL        L    S +G ++S +I  D    SKG GF + E++E  +  I   NG  I
Sbjct:  217 GPNGTAQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKC--YGFVDFEQPAFAECAVKGLQGKGVQAQMAKVGIWVLHRPAIQQEQDPTNLYIANLPPHYKETDLEAMLSKYGQVVSTRILRDQQMNSKGVGFARMESREKCEQIIQMFNGNTI 389          
The following BLAST results are available for this feature:
BLAST of EY711434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 168
Match NameE-valueIdentityDescription
SHEP_DROGR6.773e-1528.90Protein alan shepard OS=Drosophila grimshawi GN=sh... [more]
ROC5_NICSY6.773e-1527.4433 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
SHEP_DROYA1.509e-1428.90Protein alan shepard OS=Drosophila yakuba GN=shep ... [more]
SHEP_DROSE1.509e-1428.90Protein alan shepard OS=Drosophila sechellia GN=sh... [more]
SHEP_DROME1.509e-1428.90Protein alan shepard OS=Drosophila melanogaster GN... [more]
SHEP_DROER1.509e-1428.90Protein alan shepard OS=Drosophila erecta GN=shep ... [more]
TIA1_MOUSE3.362e-1428.73Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=... [more]
TIA1_HUMAN3.362e-1428.73Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=T... [more]
FCA_ARATH4.390e-1432.26Flowering time control protein FCA OS=Arabidopsis ... [more]
SHEP_DROAN5.734e-1429.14Protein alan shepard OS=Drosophila ananassae GN=sh... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-007-F08-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711434 ID=EY711434; Name=EY711434; organism=Citrus sinensis; type=EST; length=927bp
CCACGCGTCCGATAGAATCAGATTATTTATCCTGTTATCTCTCTAGATTT
TTATTTGAGAACTAGCAAGAGAAGAGGGAAATAAAAAAGCCAAAAAAAAA
AAGAAGGATCTAGAAGTGGTAGTGATGGCACAGATTCAGGTGCAACATCA
AGCGCAAATGTCGGGGCCAAACGGAGTGGCGGCGGGTGCGTCAGGGAACC
AGTTCCTAACGACGTCTCTTTATGTTGGCGATCTCGATTTCAACGTGACC
GATTCGCAGCTTTATGATCTGTTCAGCCAGGTCGGTCAAGTTCTGTCGGT
TAGGGTTTGTCGGGACCTGAGCACCAGGCGCTCACTCGGCTATGGTTACG
TTAACTACGCCAACCCTGCAGATGCGGCAAGGGCACTGGATGTTCTTAAC
TTCACTCCACTTAATAATAAGTCCATTAGAATCATGTATTCCCATCGGGA
TCCTAGTATTCGGAAAAGCGGTACTGGGAACATATTTATCAAGAATTTGG
ACAAGTCTATTGATCACAAAGCATTACACGATACATTTTCTTCATTCGGA
AACATTCTTTCTTGTAAGATAGCTACTGATGGTTCTGGCCAGTCCAAAGG
TTTCGGTTTTGTGCAATTTGAGAACAAAGAATCTGCTCAAAATGCTATTG
ATAAGTTAAATGGCATGCTTATTAATGATAAACAAGTNGTTGTTGGGCAC
TTTCTTCGTAAGCAGGAAAGAGAACTGTAGCAATTAAAACAAATTTCATA
ACGTATTTGTCAAAACCTTGCTGAGTCACTACAGATGAAGATTTGAAGAA
ATTTTTGGTGAGTATGGAACATTACANTGCANTANTGATGAGGGATGGAG
ATGGAAAATCCAGTGTTTTGGATTTGTGATTTTTGAAATGCAAATGATGC
TGCCAAGCTGTGGAGCTCTTATGGAAA
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