EY711434

Overview
NameEY711434
Unique NameEY711434
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length927
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: MRD1_KLULA (Multiple RNA-binding domain-containing protein 1 OS=Kluyveromyces lactis GN=MRD1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.412e-12
Identity = 45/175 (25.71%), Postives = 85/175 (48.57%), Query Frame = 2
Query:  209 TTSLYVGDLDFNVTDSQLYDLFSQ-----VGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSI--------RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVV 694
            T S+++ +L+F+ T  QL + F       V QV +    +      S+G+G+  +     A   +  +  T L+   +++  SHR  +         +K   G I +KNL      K + + FSSFG + S ++       ++GF FV+F   + A+NA+D+L G+ +  +++V+
Sbjct:  650 TVSIFIKNLNFSTTSQQLTEKFKPFNGFVVAQVKTKPDPKQPGKTLSMGFGFAEFKTKEQANAVISAMEGTILDGHKLQLKLSHRQGTSTTNASSKKKKKNQGKIIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQLQGVHLLGRRLVM 824          
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: MRD1_YEAST (Multiple RNA-binding domain-containing protein 1 OS=Saccharomyces cerevisiae GN=MRD1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.845e-12
Identity = 47/176 (26.70%), Postives = 90/176 (51.14%), Query Frame = 2
Query:  209 TTSLYVGDLDFNVTDSQLYDLFSQ-----VGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSG---------TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVV 694
            T S+++ +L+F+ T+  L D F       V QV +    +      S+G+G+V +     A   +  ++ T ++   I++  SHR  S  +SG         +G I +KNL      K + + F+SFG + S ++       ++GF FV+F   + A+NA+D+L+G+ +  +++V+
Sbjct:  662 TVSIFIKNLNFSTTNQNLTDRFKVFTGFVVAQVKTKPDPKHQGKTLSMGFGFVEFRTKEQANAVIAAMDGTVIDGHKIQLKLSHRQAS--QSGNTKTKSNKKSGKIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQLHGVHLLGRRLVM 835          
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: HSH49_YEAST (Protein HSH49 OS=Saccharomyces cerevisiae GN=HSH49 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.845e-12
Identity = 52/178 (29.21%), Postives = 92/178 (51.69%), Query Frame = 2
Query:  215 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFT-PLNNKSIRIMY-------SHRDPSIRKS---GTGNIFIKNLDKSIDHKALHDTFSSFGNIL-SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVGHFLRK 712
            ++YVG++D  +T  QLY+LF Q+  VL ++  +D   +   GY ++ + N  DA  A+ ++N T  L ++ I++         ++   +I K        +FIKNL  SID   L   F+ FG ++   +I    +G+ K   +V FE+ E A  AI  LN  L+ + ++ V +  ++
Sbjct:   10 TVYVGNIDPRITKEQLYELFIQINPVLRIKYPKDKVLQAYQGYAFIEFYNQGDAQYAIKIMNNTVRLYDRLIKVRQVTNSTGTTNLPSNISKDMILPIAKLFIKNLADSIDSDQLVKIFNKFGKLIREPEIFYLSNGKLK-CAYVYFEDFEKADLAIKSLNNQLVANNRITVDYAFKE 186          
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.409e-12
Identity = 47/167 (28.14%), Postives = 83/167 (49.70%), Query Frame = 2
Query:  218 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYS-------HRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVV 694
            L+VG+L +++    L  LF Q G V    V  +  T RS G+G+V  +   +A +A+++ +   LN + + +  +        R P   +  T  I++ N+   ID   L   FS  G ++S ++  D  SG+S+GFGFV   ++     AI  L+G  ++ + + V
Sbjct:   99 LFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQP-TYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRV 264          
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: GAR2_SCHPO (Protein gar2 OS=Schizosaccharomyces pombe GN=gar2 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.409e-12
Identity = 50/171 (29.24%), Postives = 83/171 (48.54%), Query Frame = 2
Query:  209 TTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPS----IRKSGTGN-----------IFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLI 673
            T +++VG L +NV D  L   F + G ++  RV  D  + RS GYGYV++  P  A  A+       ++ + + +  S+  P+      +   GN           +F+ NL  +     L   F   G+I S ++ TD  SG+ KGFG+V F + +SA+  ++ +NG  I
Sbjct:  262 TCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVE-MNGHFI 431          
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: RBM19_MOUSE (Probable RNA-binding protein 19 OS=Mus musculus GN=Rbm19 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.109e-12
Identity = 43/164 (26.22%), Postives = 84/164 (51.22%), Query Frame = 2
Query:  215 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRR---SLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHR--DPSI---------RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD--GSGQSKGFGFVQFENKESAQNAIDKL 658
            +L++ +L+F+ T+  L  +FS+VG + S  + +  +      S+G+G+V Y  P  A +AL  L    ++   + +  S R   P++         +K  T  I ++N+    + + + + FS+FG + + ++     G+G  +GFGFV F  K+ A+ A + L
Sbjct:  723 TLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERATKPALTSTRKKQVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNAL 886          
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: HRB1_YEAST (Protein HRB1 OS=Saccharomyces cerevisiae GN=HRB1 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 4.109e-12
Identity = 50/173 (28.90%), Postives = 80/173 (46.24%), Query Frame = 2
Query:  197 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSI----RKS----------GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI 673
            N+  + S++VG+L ++ T   L + FSQ+G+V+   +       R  G G V + N  D  RA+   +     ++ I +   +  PS     RK+           T  + +KNL  S++ +AL D F   GN+    +  DG G S G G V F + +    AI+K NG  I
Sbjct:  156 NRNYSNSIFVGNLTYDSTPEDLTEFFSQIGKVVRADIITSRGHHR--GMGTVEFTNSDDVDRAIRQYDGAFFMDRKIFVRQDNPPPSNNIKERKALDRGELRHNRKTHEVIVKNLPASVNWQALKDIFKECGNVAHADVELDGDGVSTGSGTVSFYDIKDLHRAIEKYNGYSI 326          
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: PUF68_DROME (Poly(U)-binding-splicing factor half pint OS=Drosophila melanogaster GN=pUf68 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 5.367e-12
Identity = 45/194 (23.20%), Postives = 89/194 (45.88%), Query Frame = 2
Query:  110 LEVVVMAQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRK---------SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQS-KGFGFVQFENKESAQNAIDKLN 661
            +++V+M Q  + HQ Q                L   +YVG + F + +  +   F+  G + S+ +  D  T++  G+ +V Y  P  A  AL+ +N   +  ++I++      P  ++              I++ ++   +  + +   F +FG IL CK+A   S  + KG+GF+++ NK++   AI  +N
Sbjct:   97 IKMVLMKQT-LAHQQQQLATQRTQVQRQQALALMCRVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQMNGALMGGRNIKVGRPSNMPQAQQVIDEVQEEAKSFNRIYVASIHPDLSEEDIKSVFEAFGPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIASMN 289          
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.009e-12
Identity = 47/166 (28.31%), Postives = 82/166 (49.40%), Query Frame = 2
Query:  218 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLN------NKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVV 694
            L+VG+L ++V    L  LF Q G V    V  +  T +S G+G+V  +   +A +A+++ N   +N      NK+ R       P      +  I++ N+   ID   L   FS  G ++S ++  D  +G+S+GFGFV   ++    +AI  L+G  ++ + + V
Sbjct:  138 LFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERPPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRV 303          
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: PUF60_RAT (Poly(U)-binding-splicing factor PUF60 OS=Rattus norvegicus GN=Puf60 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 7.009e-12
Identity = 46/201 (22.89%), Postives = 94/201 (46.77%), Query Frame = 2
Query:  125 MAQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSIRKSGT-----GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-GQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVG 697
            MA + +     +S    +AA       +   +YVG + + + +  +   F+  G + S+ +  D  T +  G+ +V Y  P  A  AL+ +N   L  ++I++          P I +          I++ ++ + +    +   F +FG I SC +A D + G+ KG+GF+++E  +S+Q+A+  +N   +  + + VG
Sbjct:  105 MAAVTMGFGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVG 305          
The following BLAST results are available for this feature:
BLAST of EY711434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 168
Match NameE-valueIdentityDescription
MRD1_KLULA1.412e-1225.71Multiple RNA-binding domain-containing protein 1 O... [more]
MRD1_YEAST1.845e-1226.70Multiple RNA-binding domain-containing protein 1 O... [more]
HSH49_YEAST1.845e-1229.21Protein HSH49 OS=Saccharomyces cerevisiae GN=HSH49... [more]
ROC3_NICSY2.409e-1228.1428 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
GAR2_SCHPO2.409e-1229.24Protein gar2 OS=Schizosaccharomyces pombe GN=gar2 ... [more]
RBM19_MOUSE4.109e-1226.22Probable RNA-binding protein 19 OS=Mus musculus GN... [more]
HRB1_YEAST4.109e-1228.90Protein HRB1 OS=Saccharomyces cerevisiae GN=HRB1 P... [more]
PUF68_DROME5.367e-1223.20Poly(U)-binding-splicing factor half pint OS=Droso... [more]
ROC4_NICSY7.009e-1228.3131 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
PUF60_RAT7.009e-1222.89Poly(U)-binding-splicing factor PUF60 OS=Rattus no... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-007-F08-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711434 ID=EY711434; Name=EY711434; organism=Citrus sinensis; type=EST; length=927bp
CCACGCGTCCGATAGAATCAGATTATTTATCCTGTTATCTCTCTAGATTT
TTATTTGAGAACTAGCAAGAGAAGAGGGAAATAAAAAAGCCAAAAAAAAA
AAGAAGGATCTAGAAGTGGTAGTGATGGCACAGATTCAGGTGCAACATCA
AGCGCAAATGTCGGGGCCAAACGGAGTGGCGGCGGGTGCGTCAGGGAACC
AGTTCCTAACGACGTCTCTTTATGTTGGCGATCTCGATTTCAACGTGACC
GATTCGCAGCTTTATGATCTGTTCAGCCAGGTCGGTCAAGTTCTGTCGGT
TAGGGTTTGTCGGGACCTGAGCACCAGGCGCTCACTCGGCTATGGTTACG
TTAACTACGCCAACCCTGCAGATGCGGCAAGGGCACTGGATGTTCTTAAC
TTCACTCCACTTAATAATAAGTCCATTAGAATCATGTATTCCCATCGGGA
TCCTAGTATTCGGAAAAGCGGTACTGGGAACATATTTATCAAGAATTTGG
ACAAGTCTATTGATCACAAAGCATTACACGATACATTTTCTTCATTCGGA
AACATTCTTTCTTGTAAGATAGCTACTGATGGTTCTGGCCAGTCCAAAGG
TTTCGGTTTTGTGCAATTTGAGAACAAAGAATCTGCTCAAAATGCTATTG
ATAAGTTAAATGGCATGCTTATTAATGATAAACAAGTNGTTGTTGGGCAC
TTTCTTCGTAAGCAGGAAAGAGAACTGTAGCAATTAAAACAAATTTCATA
ACGTATTTGTCAAAACCTTGCTGAGTCACTACAGATGAAGATTTGAAGAA
ATTTTTGGTGAGTATGGAACATTACANTGCANTANTGATGAGGGATGGAG
ATGGAAAATCCAGTGTTTTGGATTTGTGATTTTTGAAATGCAAATGATGC
TGCCAAGCTGTGGAGCTCTTATGGAAA
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