EY711434
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: MRD1_KLULA (Multiple RNA-binding domain-containing protein 1 OS=Kluyveromyces lactis GN=MRD1 PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.412e-12 Identity = 45/175 (25.71%), Postives = 85/175 (48.57%), Query Frame = 2 Query: 209 TTSLYVGDLDFNVTDSQLYDLFSQ-----VGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSI--------RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVV 694 T S+++ +L+F+ T QL + F V QV + + S+G+G+ + A + + T L+ +++ SHR + +K G I +KNL K + + FSSFG + S ++ ++GF FV+F + A+NA+D+L G+ + +++V+ Sbjct: 650 TVSIFIKNLNFSTTSQQLTEKFKPFNGFVVAQVKTKPDPKQPGKTLSMGFGFAEFKTKEQANAVISAMEGTILDGHKLQLKLSHRQGTSTTNASSKKKKKNQGKIIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQLQGVHLLGRRLVM 824
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: MRD1_YEAST (Multiple RNA-binding domain-containing protein 1 OS=Saccharomyces cerevisiae GN=MRD1 PE=1 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.845e-12 Identity = 47/176 (26.70%), Postives = 90/176 (51.14%), Query Frame = 2 Query: 209 TTSLYVGDLDFNVTDSQLYDLFSQ-----VGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSG---------TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVV 694 T S+++ +L+F+ T+ L D F V QV + + S+G+G+V + A + ++ T ++ I++ SHR S +SG +G I +KNL K + + F+SFG + S ++ ++GF FV+F + A+NA+D+L+G+ + +++V+ Sbjct: 662 TVSIFIKNLNFSTTNQNLTDRFKVFTGFVVAQVKTKPDPKHQGKTLSMGFGFVEFRTKEQANAVIAAMDGTVIDGHKIQLKLSHRQAS--QSGNTKTKSNKKSGKIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQLHGVHLLGRRLVM 835
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: HSH49_YEAST (Protein HSH49 OS=Saccharomyces cerevisiae GN=HSH49 PE=1 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.845e-12 Identity = 52/178 (29.21%), Postives = 92/178 (51.69%), Query Frame = 2 Query: 215 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFT-PLNNKSIRIMY-------SHRDPSIRKS---GTGNIFIKNLDKSIDHKALHDTFSSFGNIL-SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVGHFLRK 712 ++YVG++D +T QLY+LF Q+ VL ++ +D + GY ++ + N DA A+ ++N T L ++ I++ ++ +I K +FIKNL SID L F+ FG ++ +I +G+ K +V FE+ E A AI LN L+ + ++ V + ++ Sbjct: 10 TVYVGNIDPRITKEQLYELFIQINPVLRIKYPKDKVLQAYQGYAFIEFYNQGDAQYAIKIMNNTVRLYDRLIKVRQVTNSTGTTNLPSNISKDMILPIAKLFIKNLADSIDSDQLVKIFNKFGKLIREPEIFYLSNGKLK-CAYVYFEDFEKADLAIKSLNNQLVANNRITVDYAFKE 186
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 2.409e-12 Identity = 47/167 (28.14%), Postives = 83/167 (49.70%), Query Frame = 2 Query: 218 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYS-------HRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVV 694 L+VG+L +++ L LF Q G V V + T RS G+G+V + +A +A+++ + LN + + + + R P + T I++ N+ ID L FS G ++S ++ D SG+S+GFGFV ++ AI L+G ++ + + V Sbjct: 99 LFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQP-TYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRV 264
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: GAR2_SCHPO (Protein gar2 OS=Schizosaccharomyces pombe GN=gar2 PE=1 SV=2) HSP 1 Score: 73.1738 bits (178), Expect = 2.409e-12 Identity = 50/171 (29.24%), Postives = 83/171 (48.54%), Query Frame = 2 Query: 209 TTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPS----IRKSGTGN-----------IFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLI 673 T +++VG L +NV D L F + G ++ RV D + RS GYGYV++ P A A+ ++ + + + S+ P+ + GN +F+ NL + L F G+I S ++ TD SG+ KGFG+V F + +SA+ ++ +NG I Sbjct: 262 TCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVE-MNGHFI 431
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: RBM19_MOUSE (Probable RNA-binding protein 19 OS=Mus musculus GN=Rbm19 PE=1 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 4.109e-12 Identity = 43/164 (26.22%), Postives = 84/164 (51.22%), Query Frame = 2 Query: 215 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRR---SLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHR--DPSI---------RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD--GSGQSKGFGFVQFENKESAQNAIDKL 658 +L++ +L+F+ T+ L +FS+VG + S + + + S+G+G+V Y P A +AL L ++ + + S R P++ +K T I ++N+ + + + + FS+FG + + ++ G+G +GFGFV F K+ A+ A + L Sbjct: 723 TLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERATKPALTSTRKKQVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNAL 886
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: HRB1_YEAST (Protein HRB1 OS=Saccharomyces cerevisiae GN=HRB1 PE=1 SV=2) HSP 1 Score: 72.4034 bits (176), Expect = 4.109e-12 Identity = 50/173 (28.90%), Postives = 80/173 (46.24%), Query Frame = 2 Query: 197 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSI----RKS----------GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI 673 N+ + S++VG+L ++ T L + FSQ+G+V+ + R G G V + N D RA+ + ++ I + + PS RK+ T + +KNL S++ +AL D F GN+ + DG G S G G V F + + AI+K NG I Sbjct: 156 NRNYSNSIFVGNLTYDSTPEDLTEFFSQIGKVVRADIITSRGHHR--GMGTVEFTNSDDVDRAIRQYDGAFFMDRKIFVRQDNPPPSNNIKERKALDRGELRHNRKTHEVIVKNLPASVNWQALKDIFKECGNVAHADVELDGDGVSTGSGTVSFYDIKDLHRAIEKYNGYSI 326
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: PUF68_DROME (Poly(U)-binding-splicing factor half pint OS=Drosophila melanogaster GN=pUf68 PE=1 SV=2) HSP 1 Score: 72.0182 bits (175), Expect = 5.367e-12 Identity = 45/194 (23.20%), Postives = 89/194 (45.88%), Query Frame = 2 Query: 110 LEVVVMAQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRK---------SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQS-KGFGFVQFENKESAQNAIDKLN 661 +++V+M Q + HQ Q L +YVG + F + + + F+ G + S+ + D T++ G+ +V Y P A AL+ +N + ++I++ P ++ I++ ++ + + + F +FG IL CK+A S + KG+GF+++ NK++ AI +N Sbjct: 97 IKMVLMKQT-LAHQQQQLATQRTQVQRQQALALMCRVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQMNGALMGGRNIKVGRPSNMPQAQQVIDEVQEEAKSFNRIYVASIHPDLSEEDIKSVFEAFGPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIASMN 289
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 7.009e-12 Identity = 47/166 (28.31%), Postives = 82/166 (49.40%), Query Frame = 2 Query: 218 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLN------NKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVV 694 L+VG+L ++V L LF Q G V V + T +S G+G+V + +A +A+++ N +N NK+ R P + I++ N+ ID L FS G ++S ++ D +G+S+GFGFV ++ +AI L+G ++ + + V Sbjct: 138 LFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERPPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRV 303
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: PUF60_RAT (Poly(U)-binding-splicing factor PUF60 OS=Rattus norvegicus GN=Puf60 PE=2 SV=2) HSP 1 Score: 71.633 bits (174), Expect = 7.009e-12 Identity = 46/201 (22.89%), Postives = 94/201 (46.77%), Query Frame = 2 Query: 125 MAQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSIRKSGT-----GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-GQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVG 697 MA + + +S +AA + +YVG + + + + + F+ G + S+ + D T + G+ +V Y P A AL+ +N L ++I++ P I + I++ ++ + + + F +FG I SC +A D + G+ KG+GF+++E +S+Q+A+ +N + + + VG Sbjct: 105 MAAVTMGFGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVG 305 The following BLAST results are available for this feature:
BLAST of EY711434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 168
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Sequences
The
following sequences are available for this feature:
EST sequence >EY711434 ID=EY711434; Name=EY711434; organism=Citrus sinensis; type=EST; length=927bpback to top |