EY711434
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: PUF60_PONAB (Poly(U)-binding-splicing factor PUF60 OS=Pongo abelii GN=PUF60 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 7.009e-12 Identity = 46/201 (22.89%), Postives = 94/201 (46.77%), Query Frame = 2 Query: 125 MAQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSIRKSGT-----GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-GQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVG 697 MA + + +S +AA + +YVG + + + + + F+ G + S+ + D T + G+ +V Y P A AL+ +N L ++I++ P I + I++ ++ + + + F +FG I SC +A D + G+ KG+GF+++E +S+Q+A+ +N + + + VG Sbjct: 99 MAAVTMGFGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVG 299
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: PUF60_MOUSE (Poly(U)-binding-splicing factor PUF60 OS=Mus musculus GN=Puf60 PE=2 SV=2) HSP 1 Score: 71.633 bits (174), Expect = 7.009e-12 Identity = 46/201 (22.89%), Postives = 94/201 (46.77%), Query Frame = 2 Query: 125 MAQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSIRKSGT-----GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-GQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVG 697 MA + + +S +AA + +YVG + + + + + F+ G + S+ + D T + G+ +V Y P A AL+ +N L ++I++ P I + I++ ++ + + + F +FG I SC +A D + G+ KG+GF+++E +S+Q+A+ +N + + + VG Sbjct: 105 MAAVTMGFGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVG 305
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: PUF60_HUMAN (Poly(U)-binding-splicing factor PUF60 OS=Homo sapiens GN=PUF60 PE=1 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 7.009e-12 Identity = 46/201 (22.89%), Postives = 94/201 (46.77%), Query Frame = 2 Query: 125 MAQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSIRKSGT-----GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-GQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVG 697 MA + + +S +AA + +YVG + + + + + F+ G + S+ + D T + G+ +V Y P A AL+ +N L ++I++ P I + I++ ++ + + + F +FG I SC +A D + G+ KG+GF+++E +S+Q+A+ +N + + + VG Sbjct: 100 MAAVTMGFGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVG 300
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: PUF60_BOVIN (Poly(U)-binding-splicing factor PUF60 OS=Bos taurus GN=PUF60 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 7.009e-12 Identity = 46/201 (22.89%), Postives = 94/201 (46.77%), Query Frame = 2 Query: 125 MAQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSIRKSGT-----GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-GQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVG 697 MA + + +S +AA + +YVG + + + + + F+ G + S+ + D T + G+ +V Y P A AL+ +N L ++I++ P I + I++ ++ + + + F +FG I SC +A D + G+ KG+GF+++E +S+Q+A+ +N + + + VG Sbjct: 71 MAAVTMGFGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVG 271
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: SQD_DROME (RNA-binding protein squid OS=Drosophila melanogaster GN=sqd PE=1 SV=3) HSP 1 Score: 71.2478 bits (173), Expect = 9.154e-12 Identity = 51/190 (26.84%), Postives = 90/190 (47.37%), Query Frame = 2 Query: 161 SGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVGHFLRKQEREL 727 +G + + ASG + L+VG L + T+ +L D F + G++ S+ V D T RS G+ ++ + N +A + + +N+K + DP K+ G IF+ L I + + F FGNI+ ++ D Q KGF F+ F++++ + + K I K+V V K E ++ Sbjct: 39 NGSSDNQSAASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTN-TEAIDKVSAADEHIINSKKV-------DPKKAKARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLL-KTPKQKIAGKEVDVKRATPKPENQM 219
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: PU60B_DANRE (Poly(U)-binding-splicing factor PUF60-B OS=Danio rerio GN=puf60b PE=2 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 9.154e-12 Identity = 46/201 (22.89%), Postives = 92/201 (45.77%), Query Frame = 2 Query: 125 MAQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSIRK-----SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVG 697 MA + + +S VAA + +YVG + + + + + F+ G + S+ + D T + G+ +V Y P A AL+ +N L ++I++ P I + I++ ++ + + F +FG I SC +A + +G+ KGFGF+++E +S+ +A+ +N + + + VG Sbjct: 57 MAAVTMGFGDPLSSLQSVAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPGSIGQAQPIIEQLAEEARAYNRIYVASIHPDLSDDDIKSVFEAFGKIKSCMLAREPTTGKHKGFGFIEYEKPQSSLDAVSSMNLFDLGGQYLRVG 257
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: MRD1_USTMA (Multiple RNA-binding domain-containing protein 1 OS=Ustilago maydis GN=MRD1 PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 9.154e-12 Identity = 50/177 (28.25%), Postives = 82/177 (46.33%), Query Frame = 2 Query: 158 MSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRR-----SLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDP-----SIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 658 + GP G AG T LYV +L F+ TD +L F + R+ RR S+GYG+V + + A A ++ L+ ++ + ++ R+ SI G+ I IKNL + + D FSS G + S ++ ++GFGFV++ AQ+A++ L Sbjct: 605 LDGPAGAGAGDEAVDGAT--LYVKNLSFSTTDERLTAFFHGLSDFAFARIQTKPDPRRPGARLSMGYGFVGFKSIDAARTAQKAMDGKVLDAHTLVVTFARRNAEASTTSISSGGSTKILIKNLPFEATKRDIRDLFSSQGQLKSVRLPKKFDNTTRGFGFVEYSTVREAQSAMEAL 779
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: RA1L2_HUMAN (Heterogeneous nuclear ribonucleoprotein A1-like protein 2 OS=Homo sapiens GN=HNRNPA1L2 PE=2 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 1.196e-11 Identity = 54/169 (31.95%), Postives = 80/169 (47.34%), Query Frame = 2 Query: 218 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKS-------GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVGH 700 L++G L F TD L F Q G + V RD +T+RS G+G+V YA + A +N TP + R++ R S S IF+ + + + L D F +G I +I TD GSG+ +GF FV F++ +S +DK+ +I V GH Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA---MNTTP-HKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDS----VDKI---VIQKYHTVKGH 173
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: YHKF_SCHPO (Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe GN=SPBC660.15 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 2.039e-11 Identity = 48/160 (30.00%), Postives = 77/160 (48.12%), Query Frame = 2 Query: 218 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVV 694 +++G L++ TD L D F Q G+VL V RD +T RS G+G++ + NP + + L+ K I P + T +F+ + + + F+ FG +L + D +G+ +GFGFV +EN ESA A + I+ K V V Sbjct: 165 MFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKEHH--LDGKIID--PKRAIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYEN-ESAVEATMSQPYITIHGKPVEV 319
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: RBM39_PONAB (RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 2.663e-11 Identity = 47/179 (26.26%), Postives = 87/179 (48.60%), Query Frame = 2 Query: 215 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPS--------IRKSGTG--NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVGHFLRKQE 718 +++ L + L + FS VG+V VR+ D ++RRS G YV + + + A+ + L I + S + + ++K G +++ +L +I L F FG I S ++ D +G+SKG+GF+ F + E A+ A+++LNG + + + VGH + + Sbjct: 154 TVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPII-VQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTD 331 The following BLAST results are available for this feature:
BLAST of EY711434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 168
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Sequences
The
following sequences are available for this feature:
EST sequence >EY711434 ID=EY711434; Name=EY711434; organism=Citrus sinensis; type=EST; length=927bpback to top |