EY711434

Overview
NameEY711434
Unique NameEY711434
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length927
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: PUF60_PONAB (Poly(U)-binding-splicing factor PUF60 OS=Pongo abelii GN=PUF60 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.009e-12
Identity = 46/201 (22.89%), Postives = 94/201 (46.77%), Query Frame = 2
Query:  125 MAQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSIRKSGT-----GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-GQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVG 697
            MA + +     +S    +AA       +   +YVG + + + +  +   F+  G + S+ +  D  T +  G+ +V Y  P  A  AL+ +N   L  ++I++          P I +          I++ ++ + +    +   F +FG I SC +A D + G+ KG+GF+++E  +S+Q+A+  +N   +  + + VG
Sbjct:   99 MAAVTMGFGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVG 299          
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: PUF60_MOUSE (Poly(U)-binding-splicing factor PUF60 OS=Mus musculus GN=Puf60 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 7.009e-12
Identity = 46/201 (22.89%), Postives = 94/201 (46.77%), Query Frame = 2
Query:  125 MAQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSIRKSGT-----GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-GQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVG 697
            MA + +     +S    +AA       +   +YVG + + + +  +   F+  G + S+ +  D  T +  G+ +V Y  P  A  AL+ +N   L  ++I++          P I +          I++ ++ + +    +   F +FG I SC +A D + G+ KG+GF+++E  +S+Q+A+  +N   +  + + VG
Sbjct:  105 MAAVTMGFGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVG 305          
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: PUF60_HUMAN (Poly(U)-binding-splicing factor PUF60 OS=Homo sapiens GN=PUF60 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.009e-12
Identity = 46/201 (22.89%), Postives = 94/201 (46.77%), Query Frame = 2
Query:  125 MAQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSIRKSGT-----GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-GQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVG 697
            MA + +     +S    +AA       +   +YVG + + + +  +   F+  G + S+ +  D  T +  G+ +V Y  P  A  AL+ +N   L  ++I++          P I +          I++ ++ + +    +   F +FG I SC +A D + G+ KG+GF+++E  +S+Q+A+  +N   +  + + VG
Sbjct:  100 MAAVTMGFGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVG 300          
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: PUF60_BOVIN (Poly(U)-binding-splicing factor PUF60 OS=Bos taurus GN=PUF60 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.009e-12
Identity = 46/201 (22.89%), Postives = 94/201 (46.77%), Query Frame = 2
Query:  125 MAQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSIRKSGT-----GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-GQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVG 697
            MA + +     +S    +AA       +   +YVG + + + +  +   F+  G + S+ +  D  T +  G+ +V Y  P  A  AL+ +N   L  ++I++          P I +          I++ ++ + +    +   F +FG I SC +A D + G+ KG+GF+++E  +S+Q+A+  +N   +  + + VG
Sbjct:   71 MAAVTMGFGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVG 271          
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: SQD_DROME (RNA-binding protein squid OS=Drosophila melanogaster GN=sqd PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 9.154e-12
Identity = 51/190 (26.84%), Postives = 90/190 (47.37%), Query Frame = 2
Query:  161 SGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVGHFLRKQEREL 727
            +G +   + ASG +     L+VG L +  T+ +L D F + G++ S+ V  D  T RS G+ ++ + N  +A   +   +   +N+K +       DP   K+  G IF+  L   I  + +   F  FGNI+  ++  D    Q KGF F+ F++++   + + K     I  K+V V     K E ++
Sbjct:   39 NGSSDNQSAASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTN-TEAIDKVSAADEHIINSKKV-------DPKKAKARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLL-KTPKQKIAGKEVDVKRATPKPENQM 219          
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: PU60B_DANRE (Poly(U)-binding-splicing factor PUF60-B OS=Danio rerio GN=puf60b PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 9.154e-12
Identity = 46/201 (22.89%), Postives = 92/201 (45.77%), Query Frame = 2
Query:  125 MAQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSIRK-----SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVG 697
            MA + +     +S    VAA       +   +YVG + + + +  +   F+  G + S+ +  D  T +  G+ +V Y  P  A  AL+ +N   L  ++I++          P I +          I++ ++   +    +   F +FG I SC +A +  +G+ KGFGF+++E  +S+ +A+  +N   +  + + VG
Sbjct:   57 MAAVTMGFGDPLSSLQSVAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPGSIGQAQPIIEQLAEEARAYNRIYVASIHPDLSDDDIKSVFEAFGKIKSCMLAREPTTGKHKGFGFIEYEKPQSSLDAVSSMNLFDLGGQYLRVG 257          
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: MRD1_USTMA (Multiple RNA-binding domain-containing protein 1 OS=Ustilago maydis GN=MRD1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.154e-12
Identity = 50/177 (28.25%), Postives = 82/177 (46.33%), Query Frame = 2
Query:  158 MSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRR-----SLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDP-----SIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 658
            + GP G  AG       T  LYV +L F+ TD +L   F  +      R+      RR     S+GYG+V + +   A  A   ++   L+  ++ + ++ R+      SI   G+  I IKNL      + + D FSS G + S ++       ++GFGFV++     AQ+A++ L
Sbjct:  605 LDGPAGAGAGDEAVDGAT--LYVKNLSFSTTDERLTAFFHGLSDFAFARIQTKPDPRRPGARLSMGYGFVGFKSIDAARTAQKAMDGKVLDAHTLVVTFARRNAEASTTSISSGGSTKILIKNLPFEATKRDIRDLFSSQGQLKSVRLPKKFDNTTRGFGFVEYSTVREAQSAMEAL 779          
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: RA1L2_HUMAN (Heterogeneous nuclear ribonucleoprotein A1-like protein 2 OS=Homo sapiens GN=HNRNPA1L2 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.196e-11
Identity = 54/169 (31.95%), Postives = 80/169 (47.34%), Query Frame = 2
Query:  218 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKS-------GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVGH 700
            L++G L F  TD  L   F Q G +    V RD +T+RS G+G+V YA   +   A   +N TP +    R++   R  S   S           IF+  + +  +   L D F  +G I   +I TD GSG+ +GF FV F++ +S    +DK+   +I     V GH
Sbjct:   16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA---MNTTP-HKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDS----VDKI---VIQKYHTVKGH 173          
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: YHKF_SCHPO (Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe GN=SPBC660.15 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.039e-11
Identity = 48/160 (30.00%), Postives = 77/160 (48.12%), Query Frame = 2
Query:  218 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVV 694
            +++G L++  TD  L D F Q G+VL   V RD +T RS G+G++ + NP      +   +   L+ K I        P   +  T  +F+  +      +   + F+ FG +L   +  D  +G+ +GFGFV +EN ESA  A      + I+ K V V
Sbjct:  165 MFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKEHH--LDGKIID--PKRAIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYEN-ESAVEATMSQPYITIHGKPVEV 319          
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: RBM39_PONAB (RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.663e-11
Identity = 47/179 (26.26%), Postives = 87/179 (48.60%), Query Frame = 2
Query:  215 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPS--------IRKSGTG--NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVGHFLRKQE 718
            +++   L   +    L + FS VG+V  VR+  D ++RRS G  YV + + +    A+ +     L    I +  S  + +        ++K   G   +++ +L  +I    L   F  FG I S ++  D  +G+SKG+GF+ F + E A+ A+++LNG  +  + + VGH   + +
Sbjct:  154 TVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPII-VQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTD 331          
The following BLAST results are available for this feature:
BLAST of EY711434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 168
Match NameE-valueIdentityDescription
PUF60_PONAB7.009e-1222.89Poly(U)-binding-splicing factor PUF60 OS=Pongo abe... [more]
PUF60_MOUSE7.009e-1222.89Poly(U)-binding-splicing factor PUF60 OS=Mus muscu... [more]
PUF60_HUMAN7.009e-1222.89Poly(U)-binding-splicing factor PUF60 OS=Homo sapi... [more]
PUF60_BOVIN7.009e-1222.89Poly(U)-binding-splicing factor PUF60 OS=Bos tauru... [more]
SQD_DROME9.154e-1226.84RNA-binding protein squid OS=Drosophila melanogast... [more]
PU60B_DANRE9.154e-1222.89Poly(U)-binding-splicing factor PUF60-B OS=Danio r... [more]
MRD1_USTMA9.154e-1228.25Multiple RNA-binding domain-containing protein 1 O... [more]
RA1L2_HUMAN1.196e-1131.95Heterogeneous nuclear ribonucleoprotein A1-like pr... [more]
YHKF_SCHPO2.039e-1130.00Uncharacterized RNA-binding protein C660.15 OS=Sch... [more]
RBM39_PONAB2.663e-1126.26RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-702-007-F08-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711434 ID=EY711434; Name=EY711434; organism=Citrus sinensis; type=EST; length=927bp
CCACGCGTCCGATAGAATCAGATTATTTATCCTGTTATCTCTCTAGATTT
TTATTTGAGAACTAGCAAGAGAAGAGGGAAATAAAAAAGCCAAAAAAAAA
AAGAAGGATCTAGAAGTGGTAGTGATGGCACAGATTCAGGTGCAACATCA
AGCGCAAATGTCGGGGCCAAACGGAGTGGCGGCGGGTGCGTCAGGGAACC
AGTTCCTAACGACGTCTCTTTATGTTGGCGATCTCGATTTCAACGTGACC
GATTCGCAGCTTTATGATCTGTTCAGCCAGGTCGGTCAAGTTCTGTCGGT
TAGGGTTTGTCGGGACCTGAGCACCAGGCGCTCACTCGGCTATGGTTACG
TTAACTACGCCAACCCTGCAGATGCGGCAAGGGCACTGGATGTTCTTAAC
TTCACTCCACTTAATAATAAGTCCATTAGAATCATGTATTCCCATCGGGA
TCCTAGTATTCGGAAAAGCGGTACTGGGAACATATTTATCAAGAATTTGG
ACAAGTCTATTGATCACAAAGCATTACACGATACATTTTCTTCATTCGGA
AACATTCTTTCTTGTAAGATAGCTACTGATGGTTCTGGCCAGTCCAAAGG
TTTCGGTTTTGTGCAATTTGAGAACAAAGAATCTGCTCAAAATGCTATTG
ATAAGTTAAATGGCATGCTTATTAATGATAAACAAGTNGTTGTTGGGCAC
TTTCTTCGTAAGCAGGAAAGAGAACTGTAGCAATTAAAACAAATTTCATA
ACGTATTTGTCAAAACCTTGCTGAGTCACTACAGATGAAGATTTGAAGAA
ATTTTTGGTGAGTATGGAACATTACANTGCANTANTGATGAGGGATGGAG
ATGGAAAATCCAGTGTTTTGGATTTGTGATTTTTGAAATGCAAATGATGC
TGCCAAGCTGTGGAGCTCTTATGGAAA
back to top