EY711434

Overview
NameEY711434
Unique NameEY711434
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length927
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: RBM39_MOUSE (RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.663e-11
Identity = 47/179 (26.26%), Postives = 87/179 (48.60%), Query Frame = 2
Query:  215 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPS--------IRKSGTG--NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVGHFLRKQE 718
            +++   L   +    L + FS VG+V  VR+  D ++RRS G  YV + + +    A+ +     L    I +  S  + +        ++K   G   +++ +L  +I    L   F  FG I S ++  D  +G+SKG+GF+ F + E A+ A+++LNG  +  + + VGH   + +
Sbjct:  154 TVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSRGIAYVEFVDVSSVRLAIGLTGQRVLGVPII-VQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTD 331          
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: RBM39_HUMAN (RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.663e-11
Identity = 47/179 (26.26%), Postives = 87/179 (48.60%), Query Frame = 2
Query:  215 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPS--------IRKSGTG--NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVGHFLRKQE 718
            +++   L   +    L + FS VG+V  VR+  D ++RRS G  YV + + +    A+ +     L    I +  S  + +        ++K   G   +++ +L  +I    L   F  FG I S ++  D  +G+SKG+GF+ F + E A+ A+++LNG  +  + + VGH   + +
Sbjct:  154 TVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPII-VQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTD 331          
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: RB97D_DROME (Ribonucleoprotein RB97D OS=Drosophila melanogaster GN=Rb97D PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.663e-11
Identity = 47/152 (30.92%), Postives = 80/152 (52.63%), Query Frame = 2
Query:  218 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNI-----FIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 655
            L++G L    T+  L   + Q G+V+ V V RD +T+RS G+G++ Y       RA +      ++ K++    +   P  R+S   NI     F+  L  + D + L + F  FGN++S K+ TD  +G+ +GF FV+F++ ++   AI K
Sbjct:   34 LFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQENRPHI-IDGKTVEAKRALPRPE-RESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAILK 183          
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.543e-11
Identity = 44/167 (26.35%), Postives = 81/167 (48.50%), Query Frame = 2
Query:  218 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYS-------HRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVV 694
            L+VG+L ++V    L  LF Q G V    V  +  T +S G+G+V  ++  +A  A++  N   LN + + +  +        R P + +     +++ NL   +D+  L   FS  G ++  ++  D  +G+S+GFGFV   + +    AI  L+G  +  + + V
Sbjct:  152 LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAF-RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRV 317          
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: RBM28_HUMAN (RNA-binding protein 28 OS=Homo sapiens GN=RBM28 PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 4.543e-11
Identity = 52/190 (27.37%), Postives = 81/190 (42.63%), Query Frame = 2
Query:  215 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVL------------------NFTPLNNKSIRIMYSHRDPSIRKSGTGN----IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVGHFLRKQE 718
            +L+VG L  +    QL +LFSQVG V    V  +  ++   G+GYV ++   D  RAL  +                  N T    K+       ++P  +K+   +    + I+NL        L   F+ FG +L   I     G+ +GFGFVQF+N   A  A+  +N   I  + V V   + K +
Sbjct:    5 TLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEITTFEGCKINVTVAKKKLRNKTKEKGKNENSECPKKEPKAKKAKVADKKARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKNLLEAGKALKGMNMKEIKGRTVAVDWAVAKDK 194          
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: DAZP1_XENLA (DAZ-associated protein 1 OS=Xenopus laevis GN=dazap1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.543e-11
Identity = 43/162 (26.54%), Postives = 74/162 (45.68%), Query Frame = 2
Query:  218 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANP-------ADAARALDVLNFTPL---------NNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFENKESAQNAID 652
            L+VG LD++ T   L   FSQ G+V+   + +D +T +S G+G+V + +P       A     LD  N  P               R  +  ++P    S +  IF+  +  +     L + F+ FG +    +  D   Q  +GFGF+ FE+++S   A++
Sbjct:   12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERSRPREGWQQKEPRTENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN 173          
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: MRD1_CANAL (Multiple RNA-binding domain-containing protein 1 OS=Candida albicans GN=MRD1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.934e-11
Identity = 49/200 (24.50%), Postives = 100/200 (50.00%), Query Frame = 2
Query:  209 TTSLYVGDLDFNVTDSQLYDLFSQ-----VGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRD------PSIRKSG-TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVGHFLRKQEREL*QLKQIS*RICQNLA 772
            T +++V +L+F  T   L DLF       V  V +    ++     S+G+G+V +     A  A+  L+   L+   +++  SH+        SI+KSG +  I IKNL      K L + F +FG + S ++       ++GF FV+F   + A+ A+ +L G+ +  +++V+ +  +  E    ++++++ ++ + +A
Sbjct:  616 TVAVFVKNLNFATTVQALSDLFKPLPGFVVATVKTKPDPKNSGKTLSMGFGFVEFRTKEQANVAISTLDGHVLDGHKLQLKLSHKQGTGTSASSIKKSGKSSKIIIKNLPFEATRKDLLELFGAFGQLKSVRVPKKFDQSARGFAFVEFNLMKEAETAMSQLEGVHLLGRRLVMQYAEQDPENAEVEIERMTKKVKKQVA 815          
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: HRP1_YEAST (Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces cerevisiae GN=HRP1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.934e-11
Identity = 36/140 (25.71%), Postives = 75/140 (53.57%), Query Frame = 2
Query:  218 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKES 634
            +++G L+++ T+  L + F + G V  +++ +D +T RS G+G++++  P+     +   +   L+ K I        P   +  TG IF+  +   +  K   + FS +G I+  ++  D  +GQS+GFGFV +++ ++
Sbjct:  161 MFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHI--LDGKVID--PKRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADA 296          
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: TSAP1_DANRE (tRNA selenocysteine 1-associated protein 1 OS=Danio rerio GN=trnau1ap PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.750e-11
Identity = 46/155 (29.68%), Postives = 80/155 (51.61%), Query Frame = 2
Query:  215 SLYVGDLDFNVTDSQLYDLFSQVGQ-VLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSG---TGNIFIKNLDKSIDHKALHDTFS-SFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNG 664
            SL++G+L+  + +  +   F+Q+G+ V+ +R+ RD  T ++ GYG+V  A+     R L  +N  PL   +    +     +  K G   T ++F+ +L   +D   L++ F   F +  S KI  D +G SK  GFV FE++   + A+  L G
Sbjct:    3 SLWMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERCLRKVNGKPLPGATPPKRFKLSRSNYGKQGESSTFSLFVSDLTPDVDDGMLYEFFHYHFSSCCSGKIVLDANGHSKCCGFVSFESEREQKRALVDLQG 157          
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: ROA1_RAT (Heterogeneous nuclear ribonucleoprotein A1 OS=Rattus norvegicus GN=Hnrnpa1 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 7.750e-11
Identity = 53/169 (31.36%), Postives = 79/169 (46.75%), Query Frame = 2
Query:  218 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKS-------GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVGH 700
            L++G L F  TD  L   F Q G +    V RD +T+RS G+G+V YA   +   A   +N  P +    R++   R  S   S           IF+  + +  +   L D F  +G I   +I TD GSG+ +GF FV F++ +S    +DK+   +I     V GH
Sbjct:   16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA---MNARP-HKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDS----VDKI---VIQKYHTVNGH 173          
The following BLAST results are available for this feature:
BLAST of EY711434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 168
Match NameE-valueIdentityDescription
RBM39_MOUSE2.663e-1126.26RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE... [more]
RBM39_HUMAN2.663e-1126.26RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE... [more]
RB97D_DROME2.663e-1130.92Ribonucleoprotein RB97D OS=Drosophila melanogaster... [more]
ROC3_ARATH4.543e-1126.3531 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
RBM28_HUMAN4.543e-1127.37RNA-binding protein 28 OS=Homo sapiens GN=RBM28 PE... [more]
DAZP1_XENLA4.543e-1126.54DAZ-associated protein 1 OS=Xenopus laevis GN=daza... [more]
MRD1_CANAL5.934e-1124.50Multiple RNA-binding domain-containing protein 1 O... [more]
HRP1_YEAST5.934e-1125.71Nuclear polyadenylated RNA-binding protein 4 OS=Sa... [more]
TSAP1_DANRE7.750e-1129.68tRNA selenocysteine 1-associated protein 1 OS=Dani... [more]
ROA1_RAT7.750e-1131.36Heterogeneous nuclear ribonucleoprotein A1 OS=Ratt... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-007-F08-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711434 ID=EY711434; Name=EY711434; organism=Citrus sinensis; type=EST; length=927bp
CCACGCGTCCGATAGAATCAGATTATTTATCCTGTTATCTCTCTAGATTT
TTATTTGAGAACTAGCAAGAGAAGAGGGAAATAAAAAAGCCAAAAAAAAA
AAGAAGGATCTAGAAGTGGTAGTGATGGCACAGATTCAGGTGCAACATCA
AGCGCAAATGTCGGGGCCAAACGGAGTGGCGGCGGGTGCGTCAGGGAACC
AGTTCCTAACGACGTCTCTTTATGTTGGCGATCTCGATTTCAACGTGACC
GATTCGCAGCTTTATGATCTGTTCAGCCAGGTCGGTCAAGTTCTGTCGGT
TAGGGTTTGTCGGGACCTGAGCACCAGGCGCTCACTCGGCTATGGTTACG
TTAACTACGCCAACCCTGCAGATGCGGCAAGGGCACTGGATGTTCTTAAC
TTCACTCCACTTAATAATAAGTCCATTAGAATCATGTATTCCCATCGGGA
TCCTAGTATTCGGAAAAGCGGTACTGGGAACATATTTATCAAGAATTTGG
ACAAGTCTATTGATCACAAAGCATTACACGATACATTTTCTTCATTCGGA
AACATTCTTTCTTGTAAGATAGCTACTGATGGTTCTGGCCAGTCCAAAGG
TTTCGGTTTTGTGCAATTTGAGAACAAAGAATCTGCTCAAAATGCTATTG
ATAAGTTAAATGGCATGCTTATTAATGATAAACAAGTNGTTGTTGGGCAC
TTTCTTCGTAAGCAGGAAAGAGAACTGTAGCAATTAAAACAAATTTCATA
ACGTATTTGTCAAAACCTTGCTGAGTCACTACAGATGAAGATTTGAAGAA
ATTTTTGGTGAGTATGGAACATTACANTGCANTANTGATGAGGGATGGAG
ATGGAAAATCCAGTGTTTTGGATTTGTGATTTTTGAAATGCAAATGATGC
TGCCAAGCTGTGGAGCTCTTATGGAAA
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