EY711434
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: RBM39_MOUSE (RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 2.663e-11 Identity = 47/179 (26.26%), Postives = 87/179 (48.60%), Query Frame = 2 Query: 215 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPS--------IRKSGTG--NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVGHFLRKQE 718 +++ L + L + FS VG+V VR+ D ++RRS G YV + + + A+ + L I + S + + ++K G +++ +L +I L F FG I S ++ D +G+SKG+GF+ F + E A+ A+++LNG + + + VGH + + Sbjct: 154 TVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSRGIAYVEFVDVSSVRLAIGLTGQRVLGVPII-VQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTD 331
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: RBM39_HUMAN (RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2) HSP 1 Score: 69.707 bits (169), Expect = 2.663e-11 Identity = 47/179 (26.26%), Postives = 87/179 (48.60%), Query Frame = 2 Query: 215 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPS--------IRKSGTG--NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVGHFLRKQE 718 +++ L + L + FS VG+V VR+ D ++RRS G YV + + + A+ + L I + S + + ++K G +++ +L +I L F FG I S ++ D +G+SKG+GF+ F + E A+ A+++LNG + + + VGH + + Sbjct: 154 TVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPII-VQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTD 331
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: RB97D_DROME (Ribonucleoprotein RB97D OS=Drosophila melanogaster GN=Rb97D PE=1 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 2.663e-11 Identity = 47/152 (30.92%), Postives = 80/152 (52.63%), Query Frame = 2 Query: 218 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNI-----FIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 655 L++G L T+ L + Q G+V+ V V RD +T+RS G+G++ Y RA + ++ K++ + P R+S NI F+ L + D + L + F FGN++S K+ TD +G+ +GF FV+F++ ++ AI K Sbjct: 34 LFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQENRPHI-IDGKTVEAKRALPRPE-RESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAILK 183
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 4.543e-11 Identity = 44/167 (26.35%), Postives = 81/167 (48.50%), Query Frame = 2 Query: 218 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYS-------HRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVV 694 L+VG+L ++V L LF Q G V V + T +S G+G+V ++ +A A++ N LN + + + + R P + + +++ NL +D+ L FS G ++ ++ D +G+S+GFGFV + + AI L+G + + + V Sbjct: 152 LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAF-RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRV 317
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: RBM28_HUMAN (RNA-binding protein 28 OS=Homo sapiens GN=RBM28 PE=1 SV=3) HSP 1 Score: 68.9366 bits (167), Expect = 4.543e-11 Identity = 52/190 (27.37%), Postives = 81/190 (42.63%), Query Frame = 2 Query: 215 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVL------------------NFTPLNNKSIRIMYSHRDPSIRKSGTGN----IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVGHFLRKQE 718 +L+VG L + QL +LFSQVG V V + ++ G+GYV ++ D RAL + N T K+ ++P +K+ + + I+NL L F+ FG +L I G+ +GFGFVQF+N A A+ +N I + V V + K + Sbjct: 5 TLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEITTFEGCKINVTVAKKKLRNKTKEKGKNENSECPKKEPKAKKAKVADKKARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKNLLEAGKALKGMNMKEIKGRTVAVDWAVAKDK 194
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: DAZP1_XENLA (DAZ-associated protein 1 OS=Xenopus laevis GN=dazap1 PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 4.543e-11 Identity = 43/162 (26.54%), Postives = 74/162 (45.68%), Query Frame = 2 Query: 218 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANP-------ADAARALDVLNFTPL---------NNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFENKESAQNAID 652 L+VG LD++ T L FSQ G+V+ + +D +T +S G+G+V + +P A LD N P R + ++P S + IF+ + + L + F+ FG + + D Q +GFGF+ FE+++S A++ Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERSRPREGWQQKEPRTENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN 173
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: MRD1_CANAL (Multiple RNA-binding domain-containing protein 1 OS=Candida albicans GN=MRD1 PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 5.934e-11 Identity = 49/200 (24.50%), Postives = 100/200 (50.00%), Query Frame = 2 Query: 209 TTSLYVGDLDFNVTDSQLYDLFSQ-----VGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRD------PSIRKSG-TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVGHFLRKQEREL*QLKQIS*RICQNLA 772 T +++V +L+F T L DLF V V + ++ S+G+G+V + A A+ L+ L+ +++ SH+ SI+KSG + I IKNL K L + F +FG + S ++ ++GF FV+F + A+ A+ +L G+ + +++V+ + + E ++++++ ++ + +A Sbjct: 616 TVAVFVKNLNFATTVQALSDLFKPLPGFVVATVKTKPDPKNSGKTLSMGFGFVEFRTKEQANVAISTLDGHVLDGHKLQLKLSHKQGTGTSASSIKKSGKSSKIIIKNLPFEATRKDLLELFGAFGQLKSVRVPKKFDQSARGFAFVEFNLMKEAETAMSQLEGVHLLGRRLVMQYAEQDPENAEVEIERMTKKVKKQVA 815
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: HRP1_YEAST (Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces cerevisiae GN=HRP1 PE=1 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 5.934e-11 Identity = 36/140 (25.71%), Postives = 75/140 (53.57%), Query Frame = 2 Query: 218 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKES 634 +++G L+++ T+ L + F + G V +++ +D +T RS G+G++++ P+ + + L+ K I P + TG IF+ + + K + FS +G I+ ++ D +GQS+GFGFV +++ ++ Sbjct: 161 MFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHI--LDGKVID--PKRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADA 296
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: TSAP1_DANRE (tRNA selenocysteine 1-associated protein 1 OS=Danio rerio GN=trnau1ap PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 7.750e-11 Identity = 46/155 (29.68%), Postives = 80/155 (51.61%), Query Frame = 2 Query: 215 SLYVGDLDFNVTDSQLYDLFSQVGQ-VLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSG---TGNIFIKNLDKSIDHKALHDTFS-SFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNG 664 SL++G+L+ + + + F+Q+G+ V+ +R+ RD T ++ GYG+V A+ R L +N PL + + + K G T ++F+ +L +D L++ F F + S KI D +G SK GFV FE++ + A+ L G Sbjct: 3 SLWMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERCLRKVNGKPLPGATPPKRFKLSRSNYGKQGESSTFSLFVSDLTPDVDDGMLYEFFHYHFSSCCSGKIVLDANGHSKCCGFVSFESEREQKRALVDLQG 157
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: ROA1_RAT (Heterogeneous nuclear ribonucleoprotein A1 OS=Rattus norvegicus GN=Hnrnpa1 PE=1 SV=3) HSP 1 Score: 68.1662 bits (165), Expect = 7.750e-11 Identity = 53/169 (31.36%), Postives = 79/169 (46.75%), Query Frame = 2 Query: 218 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKS-------GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVGH 700 L++G L F TD L F Q G + V RD +T+RS G+G+V YA + A +N P + R++ R S S IF+ + + + L D F +G I +I TD GSG+ +GF FV F++ +S +DK+ +I V GH Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA---MNARP-HKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDS----VDKI---VIQKYHTVNGH 173 The following BLAST results are available for this feature:
BLAST of EY711434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 168
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Sequences
The
following sequences are available for this feature:
EST sequence >EY711434 ID=EY711434; Name=EY711434; organism=Citrus sinensis; type=EST; length=927bpback to top |