EY711434
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: ROA1_PANTR (Heterogeneous nuclear ribonucleoprotein A1 OS=Pan troglodytes GN=HNRNPA1 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 7.750e-11 Identity = 53/169 (31.36%), Postives = 79/169 (46.75%), Query Frame = 2 Query: 218 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKS-------GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVGH 700 L++G L F TD L F Q G + V RD +T+RS G+G+V YA + A +N P + R++ R S S IF+ + + + L D F +G I +I TD GSG+ +GF FV F++ +S +DK+ +I V GH Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA---MNARP-HKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDS----VDKI---VIQKYHTVNGH 173
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: ROA1_MOUSE (Heterogeneous nuclear ribonucleoprotein A1 OS=Mus musculus GN=Hnrnpa1 PE=1 SV=2) HSP 1 Score: 68.1662 bits (165), Expect = 7.750e-11 Identity = 53/169 (31.36%), Postives = 79/169 (46.75%), Query Frame = 2 Query: 218 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKS-------GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVGH 700 L++G L F TD L F Q G + V RD +T+RS G+G+V YA + A +N P + R++ R S S IF+ + + + L D F +G I +I TD GSG+ +GF FV F++ +S +DK+ +I V GH Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA---MNARP-HKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDS----VDKI---VIQKYHTVNGH 173
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: ROA1_MACMU (Heterogeneous nuclear ribonucleoprotein A1 OS=Macaca mulatta GN=HNRNPA1 PE=2 SV=3) HSP 1 Score: 68.1662 bits (165), Expect = 7.750e-11 Identity = 55/171 (32.16%), Postives = 80/171 (46.78%), Query Frame = 2 Query: 218 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYA--NPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKS-------GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVGH 700 L++G L F TD L F Q G + V RD +T+RS G+G+V YA DAA +N P + R++ R S S IF+ + + + L D F +G I +I TD GSG+ +GF FV F++ N++DK+ +I V GH Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAA-----MNARP-HKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDD----HNSVDKI---VIQKYHTVNGH 173
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: ROA1_HUMAN (Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens GN=HNRNPA1 PE=1 SV=5) HSP 1 Score: 68.1662 bits (165), Expect = 7.750e-11 Identity = 53/169 (31.36%), Postives = 79/169 (46.75%), Query Frame = 2 Query: 218 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKS-------GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVGH 700 L++G L F TD L F Q G + V RD +T+RS G+G+V YA + A +N P + R++ R S S IF+ + + + L D F +G I +I TD GSG+ +GF FV F++ +S +DK+ +I V GH Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA---MNARP-HKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDS----VDKI---VIQKYHTVNGH 173
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: ROA1_BOVIN (Heterogeneous nuclear ribonucleoprotein A1 OS=Bos taurus GN=HNRNPA1 PE=1 SV=2) HSP 1 Score: 68.1662 bits (165), Expect = 7.750e-11 Identity = 53/169 (31.36%), Postives = 79/169 (46.75%), Query Frame = 2 Query: 218 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKS-------GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVGH 700 L++G L F TD L F Q G + V RD +T+RS G+G+V YA + A +N P + R++ R S S IF+ + + + L D F +G I +I TD GSG+ +GF FV F++ +S +DK+ +I V GH Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA---MNARP-HKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDS----VDKI---VIQKYHTVNGH 173
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: RA1L3_HUMAN (Putative heterogeneous nuclear ribonucleoprotein A1-like protein 3 OS=Homo sapiens GN=HNRPA1L3 PE=5 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 7.750e-11 Identity = 53/169 (31.36%), Postives = 79/169 (46.75%), Query Frame = 2 Query: 218 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKS-------GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVGH 700 L++G L F TD L F Q G + V RD +T+RS G+G+V YA + A +N P + R++ R S S IF+ + + + L D F +G I +I TD GSG+ +GF FV F++ +S +DK+ +I V GH Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA---MNARP-HKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDS----VDKI---VIQKYHTVNGH 173
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: NAM8_YEAST (Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 PE=1 SV=2) HSP 1 Score: 68.1662 bits (165), Expect = 7.750e-11 Identity = 52/203 (25.62%), Postives = 102/203 (50.25%), Query Frame = 2 Query: 158 MSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQV-LSVRVC----------RDLSTRRSLGYGYVNYANPADAARAL--DVLNFTPLNNKSIRI-----MYSHRDPSIRKSGTGN---IFIKNLDKSIDHKALHDTF-SSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVG 697 + G + V+ G +GNQ LY+GDLD + + +++ +G+ ++VR+ + + + GY +V++ + AA AL + + NK +++ YS+ + S+ +GN IF+ +L ++ L + F + + + KI D +G SKG+GFV+F N + Q A+ ++ G+ +N + + VG Sbjct: 41 LQGASNVSLGTTGNQ-----LYMGDLDPTWDKNTVRQIWASLGEANINVRMMWNNTLNNGSRSSMGPKNNQGYCFVDFPSSTHAANALLKNGMLIPNFPNKKLKLNWATSSYSNSNNSLNNVKSGNNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVFLNGRAIKVG 238
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: CELF5_XENTR (CUG-BP- and ETR-3-like factor 5 OS=Xenopus tropicalis GN=brunol5 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 7.750e-11 Identity = 49/179 (27.37%), Postives = 75/179 (41.90%), Query Frame = 2 Query: 131 QIQVQHQAQMSGPNGVAAGASGNQFLTT-SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNG 664 Q Q MSGP A + + L L+VG + N+ + L LF Q G++ + V +D T G ++ Y A +A L+ R + S + G +F+ L K + + F +FG+I C + G SKG FV+F + AQ AI L+G Sbjct: 19 QQQQPRACPMSGPEPPAQQSDSMKDLDAIKLFVGQIPRNLEEKDLKPLFEQFGKIYELTVLKDRYTGMHKGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESRGGDRKLFVGMLSKQQSEEEVTSMFQAFGSIEECSVLRGPDGSSKGCAFVKFSSHAEAQAAIQALHG 197 The following BLAST results are available for this feature:
BLAST of EY711434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 168
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Sequences
The
following sequences are available for this feature:
EST sequence >EY711434 ID=EY711434; Name=EY711434; organism=Citrus sinensis; type=EST; length=927bpback to top |