EY711434

Overview
NameEY711434
Unique NameEY711434
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length927
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: ROA1_PANTR (Heterogeneous nuclear ribonucleoprotein A1 OS=Pan troglodytes GN=HNRNPA1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.750e-11
Identity = 53/169 (31.36%), Postives = 79/169 (46.75%), Query Frame = 2
Query:  218 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKS-------GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVGH 700
            L++G L F  TD  L   F Q G +    V RD +T+RS G+G+V YA   +   A   +N  P +    R++   R  S   S           IF+  + +  +   L D F  +G I   +I TD GSG+ +GF FV F++ +S    +DK+   +I     V GH
Sbjct:   16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA---MNARP-HKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDS----VDKI---VIQKYHTVNGH 173          
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: ROA1_MOUSE (Heterogeneous nuclear ribonucleoprotein A1 OS=Mus musculus GN=Hnrnpa1 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 7.750e-11
Identity = 53/169 (31.36%), Postives = 79/169 (46.75%), Query Frame = 2
Query:  218 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKS-------GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVGH 700
            L++G L F  TD  L   F Q G +    V RD +T+RS G+G+V YA   +   A   +N  P +    R++   R  S   S           IF+  + +  +   L D F  +G I   +I TD GSG+ +GF FV F++ +S    +DK+   +I     V GH
Sbjct:   16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA---MNARP-HKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDS----VDKI---VIQKYHTVNGH 173          
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: ROA1_MACMU (Heterogeneous nuclear ribonucleoprotein A1 OS=Macaca mulatta GN=HNRNPA1 PE=2 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 7.750e-11
Identity = 55/171 (32.16%), Postives = 80/171 (46.78%), Query Frame = 2
Query:  218 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYA--NPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKS-------GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVGH 700
            L++G L F  TD  L   F Q G +    V RD +T+RS G+G+V YA     DAA     +N  P +    R++   R  S   S           IF+  + +  +   L D F  +G I   +I TD GSG+ +GF FV F++     N++DK+   +I     V GH
Sbjct:   16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAA-----MNARP-HKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDD----HNSVDKI---VIQKYHTVNGH 173          
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: ROA1_HUMAN (Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens GN=HNRNPA1 PE=1 SV=5)

HSP 1 Score: 68.1662 bits (165), Expect = 7.750e-11
Identity = 53/169 (31.36%), Postives = 79/169 (46.75%), Query Frame = 2
Query:  218 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKS-------GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVGH 700
            L++G L F  TD  L   F Q G +    V RD +T+RS G+G+V YA   +   A   +N  P +    R++   R  S   S           IF+  + +  +   L D F  +G I   +I TD GSG+ +GF FV F++ +S    +DK+   +I     V GH
Sbjct:   16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA---MNARP-HKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDS----VDKI---VIQKYHTVNGH 173          
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: ROA1_BOVIN (Heterogeneous nuclear ribonucleoprotein A1 OS=Bos taurus GN=HNRNPA1 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 7.750e-11
Identity = 53/169 (31.36%), Postives = 79/169 (46.75%), Query Frame = 2
Query:  218 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKS-------GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVGH 700
            L++G L F  TD  L   F Q G +    V RD +T+RS G+G+V YA   +   A   +N  P +    R++   R  S   S           IF+  + +  +   L D F  +G I   +I TD GSG+ +GF FV F++ +S    +DK+   +I     V GH
Sbjct:   16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA---MNARP-HKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDS----VDKI---VIQKYHTVNGH 173          
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: RA1L3_HUMAN (Putative heterogeneous nuclear ribonucleoprotein A1-like protein 3 OS=Homo sapiens GN=HNRPA1L3 PE=5 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.750e-11
Identity = 53/169 (31.36%), Postives = 79/169 (46.75%), Query Frame = 2
Query:  218 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKS-------GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVGH 700
            L++G L F  TD  L   F Q G +    V RD +T+RS G+G+V YA   +   A   +N  P +    R++   R  S   S           IF+  + +  +   L D F  +G I   +I TD GSG+ +GF FV F++ +S    +DK+   +I     V GH
Sbjct:   16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA---MNARP-HKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDS----VDKI---VIQKYHTVNGH 173          
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: NAM8_YEAST (Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 7.750e-11
Identity = 52/203 (25.62%), Postives = 102/203 (50.25%), Query Frame = 2
Query:  158 MSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQV-LSVRVC----------RDLSTRRSLGYGYVNYANPADAARAL--DVLNFTPLNNKSIRI-----MYSHRDPSIRKSGTGN---IFIKNLDKSIDHKALHDTF-SSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVG 697
            + G + V+ G +GNQ     LY+GDLD     + +  +++ +G+  ++VR+             +  + + GY +V++ +   AA AL  + +      NK +++      YS+ + S+    +GN   IF+ +L  ++    L + F + + +    KI  D  +G SKG+GFV+F N +  Q A+ ++ G+ +N + + VG
Sbjct:   41 LQGASNVSLGTTGNQ-----LYMGDLDPTWDKNTVRQIWASLGEANINVRMMWNNTLNNGSRSSMGPKNNQGYCFVDFPSSTHAANALLKNGMLIPNFPNKKLKLNWATSSYSNSNNSLNNVKSGNNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVFLNGRAIKVG 238          
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: CELF5_XENTR (CUG-BP- and ETR-3-like factor 5 OS=Xenopus tropicalis GN=brunol5 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.750e-11
Identity = 49/179 (27.37%), Postives = 75/179 (41.90%), Query Frame = 2
Query:  131 QIQVQHQAQMSGPNGVAAGASGNQFLTT-SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNG 664
            Q Q      MSGP   A  +   + L    L+VG +  N+ +  L  LF Q G++  + V +D  T    G  ++ Y     A +A   L+         R +      S  + G   +F+  L K    + +   F +FG+I  C +     G SKG  FV+F +   AQ AI  L+G
Sbjct:   19 QQQQPRACPMSGPEPPAQQSDSMKDLDAIKLFVGQIPRNLEEKDLKPLFEQFGKIYELTVLKDRYTGMHKGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESRGGDRKLFVGMLSKQQSEEEVTSMFQAFGSIEECSVLRGPDGSSKGCAFVKFSSHAEAQAAIQALHG 197          
The following BLAST results are available for this feature:
BLAST of EY711434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 168
Match NameE-valueIdentityDescription
ROA1_PANTR7.750e-1131.36Heterogeneous nuclear ribonucleoprotein A1 OS=Pan ... [more]
ROA1_MOUSE7.750e-1131.36Heterogeneous nuclear ribonucleoprotein A1 OS=Mus ... [more]
ROA1_MACMU7.750e-1132.16Heterogeneous nuclear ribonucleoprotein A1 OS=Maca... [more]
ROA1_HUMAN7.750e-1131.36Heterogeneous nuclear ribonucleoprotein A1 OS=Homo... [more]
ROA1_BOVIN7.750e-1131.36Heterogeneous nuclear ribonucleoprotein A1 OS=Bos ... [more]
RA1L3_HUMAN7.750e-1131.36Putative heterogeneous nuclear ribonucleoprotein A... [more]
NAM8_YEAST7.750e-1125.62Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 P... [more]
CELF5_XENTR7.750e-1127.37CUG-BP- and ETR-3-like factor 5 OS=Xenopus tropica... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-007-F08-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711434 ID=EY711434; Name=EY711434; organism=Citrus sinensis; type=EST; length=927bp
CCACGCGTCCGATAGAATCAGATTATTTATCCTGTTATCTCTCTAGATTT
TTATTTGAGAACTAGCAAGAGAAGAGGGAAATAAAAAAGCCAAAAAAAAA
AAGAAGGATCTAGAAGTGGTAGTGATGGCACAGATTCAGGTGCAACATCA
AGCGCAAATGTCGGGGCCAAACGGAGTGGCGGCGGGTGCGTCAGGGAACC
AGTTCCTAACGACGTCTCTTTATGTTGGCGATCTCGATTTCAACGTGACC
GATTCGCAGCTTTATGATCTGTTCAGCCAGGTCGGTCAAGTTCTGTCGGT
TAGGGTTTGTCGGGACCTGAGCACCAGGCGCTCACTCGGCTATGGTTACG
TTAACTACGCCAACCCTGCAGATGCGGCAAGGGCACTGGATGTTCTTAAC
TTCACTCCACTTAATAATAAGTCCATTAGAATCATGTATTCCCATCGGGA
TCCTAGTATTCGGAAAAGCGGTACTGGGAACATATTTATCAAGAATTTGG
ACAAGTCTATTGATCACAAAGCATTACACGATACATTTTCTTCATTCGGA
AACATTCTTTCTTGTAAGATAGCTACTGATGGTTCTGGCCAGTCCAAAGG
TTTCGGTTTTGTGCAATTTGAGAACAAAGAATCTGCTCAAAATGCTATTG
ATAAGTTAAATGGCATGCTTATTAATGATAAACAAGTNGTTGTTGGGCAC
TTTCTTCGTAAGCAGGAAAGAGAACTGTAGCAATTAAAACAAATTTCATA
ACGTATTTGTCAAAACCTTGCTGAGTCACTACAGATGAAGATTTGAAGAA
ATTTTTGGTGAGTATGGAACATTACANTGCANTANTGATGAGGGATGGAG
ATGGAAAATCCAGTGTTTTGGATTTGTGATTTTTGAAATGCAAATGATGC
TGCCAAGCTGTGGAGCTCTTATGGAAA
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