EY711434 | Citrus Genome Database

Overview


Name	EY711434
Unique Name	EY711434
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	927

Libraries


Library Name	Type
Sweet orange fruit, development stadium (3 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

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BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: PABP_YEAST (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Saccharomyces cerevisiae GN=PAB1 PE=1 SV=4)

HSP 1 Score: 201.06 bits (510), Expect = 7.660e-51
Identity = 96/172 (55.81%), Postives = 132/172 (76.74%), Query Frame = 2

Query:  209 TTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVGHFLRKQERE 724
            + SLYVGDL+ +V+++ LYD+FS +G V S+RVCRD  T+ SLGY YVN+ +     +A++ LN+TP+  +  RIM+S RDPS+RK G+GNIFIKNL   ID+KAL+DTFS FG+ILS KIATD +G+SKGFGFV FE + +A+ AID LNGML+N +++ V   L ++ER+
Sbjct:   37 SASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERD 208

HSP 2 Score: 102.064 bits (253), Expect = 4.843e-21
Identity = 62/197 (31.47%), Postives = 101/197 (51.27%), Query Frame = 2

Query:  212 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----------------MYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVGHFLRKQEREL*QLKQIS*R 754
            T+LYV +++   TD Q  +LF++ G ++S  + +D   +   G+G+VNY    DA +A++ LN + LN + + +                  ++R   + K    N+F+KNLD S+D + L + F+ +G I S K+    +G+SKGFGFV F   E A  AI + N  ++  K + V    RK  R     +QI  R
Sbjct:  219 TNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLK-GFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQAR 414

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BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: PABP_DEBHA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Debaryomyces hansenii GN=PAB1 PE=3 SV=2)

HSP 1 Score: 200.29 bits (508), Expect = 1.307e-50
Identity = 96/188 (51.06%), Postives = 139/188 (73.94%), Query Frame = 2

Query:  161 SGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVGHFLRKQERE 724
            SG    AA ++     + SLYVG+L+ +V ++ L+++FS +GQV S+RVCRD  T++SLGY YVN+    D  +A++ LN++ +  +  RIM+S RDPS+R++G GNIFIKNL  +ID+KALHDTF++FG ILSCK+ATD  G SK FGFV +E  E+A+ AI+ +NGML+ND++V VG  + K++RE
Sbjct:   34 SGETEEAADSAQVSDTSASLYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAIEDLNYSLIEGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFTAFGKILSCKVATDDMGISKCFGFVHYETAEAAEAAIENVNGMLLNDREVYVGKHISKKDRE 221

HSP 2 Score: 98.9821 bits (245), Expect = 4.100e-20
Identity = 63/193 (32.64%), Postives = 102/193 (52.85%), Query Frame = 2

Query:  212 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI---------------MYSH-RDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVGHFLRKQEREL*QLKQ 742
            T++Y  ++D + ++ +   LF   G++ S+ + +D    +S G+G+VN+ N   A +A+D LN   +N + I +                Y + R   + K    N+FIKNLD +ID + L + F  FG+I S ++  D +G+SKGFGFV F + E A  AI ++N  +I  K + V    RK  R   QL+Q
Sbjct:  232 TNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKD-HEGKSKGFGFVNFENHESAVKAVDELNDKEINGQKIYVGRAQKKRERLEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGSITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMIYGKPLYVALAQRKDVRRS-QLEQ 422

HSP 3 Score: 93.5893 bits (231), Expect = 1.722e-18
Identity = 55/175 (31.43%), Postives = 95/175 (54.29%), Query Frame = 2

Query:  215 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI--MYSHRDPSIR----KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVGHFLRKQER 721
            ++++ +L   + +  L+D F+  G++LS +V  D     S  +G+V+Y     A  A++ +N   LN++ + +    S +D   +    K+   N++ KN+D     +     F ++G I S  +  D  G+SKGFGFV FEN ESA  A+D+LN   IN +++ VG   +K+ER
Sbjct:  140 NIFIKNLHPAIDNKALHDTFTAFGKILSCKVATD-DMGISKCFGFVHYETAEAAEAAIENVNGMLLNDREVYVGKHISKKDRESKFEEMKANFTNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEGKSKGFGFVNFENHESAVKAVDELNDKEINGQKIYVGRAQKKRER 313

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BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: PABP_ASHGO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya gossypii GN=PAB1 PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 8.469e-50
Identity = 92/170 (54.12%), Postives = 132/170 (77.65%), Query Frame = 2

Query:  215 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVGHFLRKQERE 724
            SLYVG+L+  V+++ LYD+FS +G V S+RVCRD  T  SLGY YVN+ +     +A++ LN+T +  K  RIM+S RDPS+RK G+GNI+IKNL  +ID+K+LH+TFS+FGNILSCK+ATD +G S+GFGFV FEN+  A++AI+ ++GML+ND++V V   + K++R+
Sbjct:   39 SLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIEQLNYTLIKGKPCRIMWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFGNILSCKVATDENGVSRGFGFVHFENESDARDAIEAVDGMLMNDQEVYVALHVSKKDRQ 208

HSP 2 Score: 93.5893 bits (231), Expect = 1.722e-18
Identity = 60/197 (30.46%), Postives = 99/197 (50.25%), Query Frame = 2

Query:  212 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRD----------------PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVGHFLRKQEREL*QLKQIS*R 754
            T++YV ++D   +  +  +LF + G++ S  + +D S  +  G+G+VN+ + A AA+A+D LN      + + +  + +                   + K    N+F+KNLD SID + L + F+ FG I S K+  D +G S+GFGFV F   E A  AI + N  ++  K + V    RK+ R     +QI  R
Sbjct:  219 TNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKD-SEGKLRGFGFVNFEDHAAAAKAVDELNELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEKLKEEFAPFGTITSAKVMRDETGNSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKEVRRNQLAQQIQAR 414

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BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: PABP_KLULA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Kluyveromyces lactis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 9.364e-49
Identity = 93/187 (49.73%), Postives = 132/187 (70.59%), Query Frame = 2

Query:  161 SGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVGHFLRKQER 721
            S     A+  S  +    SLYVG+LD N+T++ LYD+FS +G + S+RVCRD  T+ SLGY YVNY +     +A+  LN+  +N +  RIM+S RDP+IRK G+GNIFIKNL  +ID+KALH+TFS+FG +LSCK+A D +G S+GFGFV F+ +  A++AI+ +NGML+N  +V V   + K++R
Sbjct:   33 SASESEASSVSKVENNNASLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQELNYAEINGRPCRIMWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGEVLSCKVALDENGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKDR 219

HSP 2 Score: 98.2117 bits (243), Expect = 6.993e-20
Identity = 61/197 (30.96%), Postives = 100/197 (50.76%), Query Frame = 2

Query:  212 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----------------MYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVGHFLRKQEREL*QLKQIS*R 754
            T++YV ++D   TD +   LFSQ G+++S  + +D   +   G+G+VN+ +   AA+A++ LN     ++++ +                   +R   + K    N+FIKNLD SID + L + F+ +G I S ++  D  G SKGFGFV F + E A  A+ + N  ++  K + V    RK  R     +QI  R
Sbjct:  231 TNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPK-GFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQEGNSKGFGFVCFSSPEEATKAMTEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQAR 426

HSP 3 Score: 89.7373 bits (221), Expect = 2.487e-17
Identity = 51/175 (29.14%), Postives = 92/175 (52.57%), Query Frame = 2

Query:  215 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI-MYSHRDPSIRK-----SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVGHFLRKQER 721
            ++++ +L   + +  L++ FS  G+VLS +V  D     S G+G+V++   +DA  A++ +N   +N   + + M+  +   I K     +   NI++KN+D     +     FS +G I+S  +  D  G+ KGFGFV F +  +A  A+++LNG     + + VG   +K ER
Sbjct:  139 NIFIKNLHPAIDNKALHETFSTFGEVLSCKVALD-ENGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKDRISKLEEAKANFTNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRAQKKYER 312

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BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: PAP1B_DICDI (Polyadenylate-binding protein 1-B OS=Dictyostelium discoideum GN=pabpc1B PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 4.647e-48
Identity = 104/207 (50.24%), Postives = 138/207 (66.67%), Query Frame = 2

Query:  146 HQAQMSGPNGVAAGASGNQFLT-------------TSLYVGDLDFNVTDSQLYDLFSQVGQ--VLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVGHFLRKQER 721
            HQ   + P G  AGA+G   L+             TSLYVGDL  +V +  L +LFS+VG+  + S+ VCRD +T RSLGY YVN+ N  DA RALD LN+T ++ K  RIM+S+RDP+ RK+  GNIF+KNL+K +D+  L+DTFSSFGNILSCK+  +  G SKG+G+V FE  +SA+ AI+K+NG LI  K + V  F+ K ER
Sbjct:  149 HQHHHTSPMGAGAGAAGMPILSMSPIGAYQPPHQLTSLYVGDLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAERALDTLNYTLVHGKPCRIMWSYRDPTKRKTNVGNIFVKNLEKGVDNAMLYDTFSSFGNILSCKVEFE-KGISKGYGYVHFETNDSAEKAIEKVNGTLILGKPINVERFVSKVER 354

HSP 2 Score: 69.707 bits (169), Expect = 2.663e-11
Identity = 47/177 (26.55%), Postives = 79/177 (44.63%), Query Frame = 2

Query:  266 DLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDV-----------------------LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVGHFLRKQEREL 727
            +L ++ G++ S  +  D +  +S G G V + N  DA + L                         +N  P+    I+          +K+   ++FI N+D+SID   + + F+  G I+  KI  D + ++KGFGF+ F   + AQ A+D LNG     KQ+ V  F  K   ++
Sbjct:  378 ELSNRFGEIESCILKND-ANGKSKGLGLVEFKNQEDAQKILTESGALIISTIDGTTTVSSNGGTIEINGKPITIDRIKSKVERFTEYRKKTTDLSLFINNIDESIDRDLIKEEFAKHGTIIGIKIVQDENARNKGFGFISFSEIQEAQKALDSLNGFTFGSKQIQVS-FSNKDNNQI 552

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BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: PAB4L_HUMAN (Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.934e-47
Identity = 93/175 (53.14%), Postives = 127/175 (72.57%), Query Frame = 2

Query:  200 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVGHFLRKQERE 724
            ++   SLYVGDL  +VT+  L+  FS VG VLS+R+CRD  TRRSLGY YVN+   ADA +ALD +NF  +  KSIR+M+S RD  +R+SG GN+FIKNLDKSID+K L++ FS+FG ILS K+ +D  G SKG+ FV F+N+ +A  AI+++NG L+   +V VG F  +++RE
Sbjct:    6 KYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDRE 179

HSP 2 Score: 111.309 bits (277), Expect = 7.982e-24
Identity = 63/183 (34.43%), Postives = 109/183 (59.56%), Query Frame = 2

Query:  215 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSIRKSGTG--NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVGHFLRKQEREL*QLKQI 745
            ++++ +LD ++ +  LY+ FS  G++LS +V  D   + S GY +V++ N + A RA++ +N   L    + +        R+  +R   +   N++IKN    +D + L D FS +G  LS K+ TD SG+SKGFGFV F++ E+A+ A++++NG  IN + + VG   +K ER+  +LKQ+
Sbjct:   99 NVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSD--DQGSKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQA-ELKQM 278

HSP 3 Score: 89.3521 bits (220), Expect = 3.248e-17
Identity = 54/177 (30.51%), Postives = 98/177 (55.37%), Query Frame = 2

Query:  212 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPS----------------IRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVV 694
            T++Y+ +   ++ D +L D+FS+ G+ LSV+V  D S+ +S G+G+V++ +   A +A++ +N   +N + I +  + +                   IR      ++IKNLD +ID + L + FSSFG+I   K+  +  GQSKGFG + F + E A  A+ ++NG ++  K + +
Sbjct:  190 TNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQE-EGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSI 364

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BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: PABP5_PONPY (Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 9.070e-44
Identity = 90/174 (51.72%), Postives = 120/174 (68.97%), Query Frame = 2

Query:  200 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVGHFLRKQER 721
            ++L  +LYVGDLD +VT+  LY  F   G +   R+CRD  TR  LGYGYVN+  PADA  AL+ +NF  +N K  R+M+S  D  +RKSG GNIFIKNLDKSID++AL   FS+FGNILSCK+  D +G SKG+ +V F++  +A  AI  +NG+ +N++QV VG F   +ER
Sbjct:   14 KYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER 186

HSP 2 Score: 100.138 bits (248), Expect = 1.840e-20
Identity = 61/176 (34.66%), Postives = 99/176 (56.25%), Query Frame = 2

Query:  215 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSIR---KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVGHFLRKQER 721
            ++++ +LD ++ +  L+ LFS  G +LS +V  D     S GY YV++ + A A RA+  +N   LNN+ + +        R   +R   ++   N+F+KN+   ID + L + F  +G   S K+  D SG+SKGFGFV++E  E+AQ A+  L+G  I+ K + VG   +K ER
Sbjct:  107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIER 280

HSP 3 Score: 82.4185 bits (202), Expect = 3.971e-15
Identity = 56/183 (30.60%), Postives = 94/183 (51.37%), Query Frame = 2

Query:  212 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNK----------------------SIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVV 694
            T+++V ++  ++ D +L +LF + G   SV+V RD S + S G+G+V Y     A +A+  L+   ++ K                       +R+    R P +       I+IKNLD++I+ + L + FSSFG+I   K+  +  GQ KGFG V F + E A  A+D++NG ++  K + V
Sbjct:  199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGK-SKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP------IYIKNLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 373

[Close]

BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: PABP5_PANTR (Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 9.070e-44
Identity = 90/174 (51.72%), Postives = 120/174 (68.97%), Query Frame = 2

Query:  200 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVGHFLRKQER 721
            ++L  +LYVGDLD +VT+  LY  F   G +   R+CRD  TR  LGYGYVN+  PADA  AL+ +NF  +N K  R+M+S  D  +RKSG GNIFIKNLDKSID++AL   FS+FGNILSCK+  D +G SKG+ +V F++  +A  AI  +NG+ +N++QV VG F   +ER
Sbjct:   14 KYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER 186

HSP 2 Score: 100.138 bits (248), Expect = 1.840e-20
Identity = 61/176 (34.66%), Postives = 99/176 (56.25%), Query Frame = 2

Query:  215 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSIR---KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVGHFLRKQER 721
            ++++ +LD ++ +  L+ LFS  G +LS +V  D     S GY YV++ + A A RA+  +N   LNN+ + +        R   +R   ++   N+F+KN+   ID + L + F  +G   S K+  D SG+SKGFGFV++E  E+AQ A+  L+G  I+ K + VG   +K ER
Sbjct:  107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIER 280

HSP 3 Score: 82.4185 bits (202), Expect = 3.971e-15
Identity = 56/183 (30.60%), Postives = 94/183 (51.37%), Query Frame = 2

Query:  212 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNK----------------------SIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVV 694
            T+++V ++  ++ D +L +LF + G   SV+V RD S + S G+G+V Y     A +A+  L+   ++ K                       +R+    R P +       I+IKNLD++I+ + L + FSSFG+I   K+  +  GQ KGFG V F + E A  A+D++NG ++  K + V
Sbjct:  199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGK-SKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP------IYIKNLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 373

[Close]

BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: PABP5_MACMU (Polyadenylate-binding protein 5 OS=Macaca mulatta GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 9.070e-44
Identity = 90/174 (51.72%), Postives = 120/174 (68.97%), Query Frame = 2

Query:  200 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVGHFLRKQER 721
            ++L  +LYVGDLD +VT+  LY  F   G +   R+CRD  TR  LGYGYVN+  PADA  AL+ +NF  +N K  R+M+S  D  +RKSG GNIFIKNLDKSID++AL   FS+FGNILSCK+  D +G SKG+ +V F++  +A  AI  +NG+ +N++QV VG F   +ER
Sbjct:   14 KYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER 186

HSP 2 Score: 100.138 bits (248), Expect = 1.840e-20
Identity = 61/176 (34.66%), Postives = 99/176 (56.25%), Query Frame = 2

Query:  215 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSIR---KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVGHFLRKQER 721
            ++++ +LD ++ +  L+ LFS  G +LS +V  D     S GY YV++ + A A RA+  +N   LNN+ + +        R   +R   ++   N+F+KN+   ID + L + F  +G   S K+  D SG+SKGFGFV++E  E+AQ A+  L+G  I+ K + VG   +K ER
Sbjct:  107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIER 280

HSP 3 Score: 82.0333 bits (201), Expect = 5.186e-15
Identity = 56/183 (30.60%), Postives = 94/183 (51.37%), Query Frame = 2

Query:  212 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNK----------------------SIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVV 694
            T+++V ++  ++ D +L +LF + G   SV+V RD S + S G+G+V Y     A +A+  L+   ++ K                       +R+    R P +       I+IKNLD++I+ + L + FSSFG+I   K+  +  GQ KGFG V F + E A  A+D++NG ++  K + V
Sbjct:  199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGK-SKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP------IYIKNLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRVVGSKPLHV 373

[Close]

BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: PABP5_HYLLA (Polyadenylate-binding protein 5 OS=Hylobates lar GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 9.070e-44
Identity = 90/174 (51.72%), Postives = 120/174 (68.97%), Query Frame = 2

Query:  200 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVGHFLRKQER 721
            ++L  +LYVGDLD +VT+  LY  F   G +   R+CRD  TR  LGYGYVN+  PADA  AL+ +NF  +N K  R+M+S  D  +RKSG GNIFIKNLDKSID++AL   FS+FGNILSCK+  D +G SKG+ +V F++  +A  AI  +NG+ +N++QV VG F   +ER
Sbjct:   14 KYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEER 186

HSP 2 Score: 100.138 bits (248), Expect = 1.840e-20
Identity = 61/176 (34.66%), Postives = 99/176 (56.25%), Query Frame = 2

Query:  215 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSIR---KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVVGHFLRKQER 721
            ++++ +LD ++ +  L+ LFS  G +LS +V  D     S GY YV++ + A A RA+  +N   LNN+ + +        R   +R   ++   N+F+KN+   ID + L + F  +G   S K+  D SG+SKGFGFV++E  E+AQ A+  L+G  I+ K + VG   +K ER
Sbjct:  107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIER 280

HSP 3 Score: 82.4185 bits (202), Expect = 3.971e-15
Identity = 56/183 (30.60%), Postives = 94/183 (51.37%), Query Frame = 2

Query:  212 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNK----------------------SIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVVV 694
            T+++V ++  ++ D +L +LF + G   SV+V RD S + S G+G+V Y     A +A+  L+   ++ K                       +R+    R P +       I+IKNLD++I+ + L + FSSFG+I   K+  +  GQ KGFG V F + E A  A+D++NG ++  K + V
Sbjct:  199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGK-SKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP------IYIKNLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 373

The following BLAST results are available for this feature:

BLAST of EY711434 vs. ExPASy Swiss-Prot

BLAST of EY711434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 168


Match Name	E-value	Identity	Description
PABP_YEAST	7.660e-51	55.81	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABP_DEBHA	1.307e-50	51.06	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABP_ASHGO	8.469e-50	54.12	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABP_KLULA	9.364e-49	49.73	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PAP1B_DICDI	4.647e-48	50.24	Polyadenylate-binding protein 1-B OS=Dictyostelium...	[more]
PAB4L_HUMAN	3.934e-47	53.14	Polyadenylate-binding protein 4-like OS=Homo sapie...	[more]
PABP5_PONPY	9.070e-44	51.72	Polyadenylate-binding protein 5 OS=Pongo pygmaeus ...	[more]
PABP5_PANTR	9.070e-44	51.72	Polyadenylate-binding protein 5 OS=Pan troglodytes...	[more]
PABP5_MACMU	9.070e-44	51.72	Polyadenylate-binding protein 5 OS=Macaca mulatta ...	[more]
PABP5_HYLLA	9.070e-44	51.72	Polyadenylate-binding protein 5 OS=Hylobates lar G...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-702-007-F08-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY711434 ID=EY711434; Name=EY711434; organism=Citrus sinensis; type=EST; length=927bp
CCACGCGTCCGATAGAATCAGATTATTTATCCTGTTATCTCTCTAGATTT
TTATTTGAGAACTAGCAAGAGAAGAGGGAAATAAAAAAGCCAAAAAAAAA
AAGAAGGATCTAGAAGTGGTAGTGATGGCACAGATTCAGGTGCAACATCA
AGCGCAAATGTCGGGGCCAAACGGAGTGGCGGCGGGTGCGTCAGGGAACC
AGTTCCTAACGACGTCTCTTTATGTTGGCGATCTCGATTTCAACGTGACC
GATTCGCAGCTTTATGATCTGTTCAGCCAGGTCGGTCAAGTTCTGTCGGT
TAGGGTTTGTCGGGACCTGAGCACCAGGCGCTCACTCGGCTATGGTTACG
TTAACTACGCCAACCCTGCAGATGCGGCAAGGGCACTGGATGTTCTTAAC
TTCACTCCACTTAATAATAAGTCCATTAGAATCATGTATTCCCATCGGGA
TCCTAGTATTCGGAAAAGCGGTACTGGGAACATATTTATCAAGAATTTGG
ACAAGTCTATTGATCACAAAGCATTACACGATACATTTTCTTCATTCGGA
AACATTCTTTCTTGTAAGATAGCTACTGATGGTTCTGGCCAGTCCAAAGG
TTTCGGTTTTGTGCAATTTGAGAACAAAGAATCTGCTCAAAATGCTATTG
ATAAGTTAAATGGCATGCTTATTAATGATAAACAAGTNGTTGTTGGGCAC
TTTCTTCGTAAGCAGGAAAGAGAACTGTAGCAATTAAAACAAATTTCATA
ACGTATTTGTCAAAACCTTGCTGAGTCACTACAGATGAAGATTTGAAGAA
ATTTTTGGTGAGTATGGAACATTACANTGCANTANTGATGAGGGATGGAG
ATGGAAAATCCAGTGTTTTGGATTTGTGATTTTTGAAATGCAAATGATGC
TGCCAAGCTGTGGAGCTCTTATGGAAA