EY711434

Overview
NameEY711434
Unique NameEY711434
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length927
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: ELAV4_MOUSE (ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.758e-23
Identity = 59/167 (35.33%), Postives = 97/167 (58.08%), Query Frame = 2
Query:  167 PNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 664
            P+ +  GA+ +    T+L V  L  N+T  +   LF  +G++ S ++ RD  T +SLGYG+VNY +P DA +A++ LN   L  K+I++ Y+   PS       N+++  L K++  K L   FS +G I++ +I  D  +G S+G GF++F+ +  A+ AI  LNG
Sbjct:   37 PSPMQTGAATDDS-KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200          
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: ELAV4_HUMAN (ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 6.758e-23
Identity = 59/167 (35.33%), Postives = 97/167 (58.08%), Query Frame = 2
Query:  167 PNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 664
            P+ +  GA+ +    T+L V  L  N+T  +   LF  +G++ S ++ RD  T +SLGYG+VNY +P DA +A++ LN   L  K+I++ Y+   PS       N+++  L K++  K L   FS +G I++ +I  D  +G S+G GF++F+ +  A+ AI  LNG
Sbjct:   32 PSPMQTGATTDDS-KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195          
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: ELAV3_XENTR (ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl3 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.505e-22
Identity = 58/171 (33.92%), Postives = 97/171 (56.73%), Query Frame = 2
Query:  158 MSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD--GSGQSKGFGFVQFENKESAQNAIDKLNG 664
            ++G NG A  +       T+L V  L  N+T  +   LF  +G++ S ++ RD  T +SLGYG+VNY +P DA +A++ LN   L  K+I++ Y+   PS       N+++ +L K+++ K +   FS +G I++ +I  D      S+G GF++F+ +  A+ AI  LNG
Sbjct:   23 LNGTNGAADDSK------TNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYAR--PSSASIRDANLYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGSVSRGVGFIRFDKRIEAEEAIKGLNG 185          
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: ELAV2_RAT (ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.568e-22
Identity = 56/152 (36.84%), Postives = 90/152 (59.21%), Query Frame = 2
Query:  212 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 664
            T+L    L  N+T  +L  LF  +G++ S ++ RD  T +SLGYG+VNY +P DA +A++ LN   L  K+I++ Y+   PS       N+++  L K++  K L   FS +G I++ +I  D  +G S+G GF++F+ +  A+ AI  LNG
Sbjct:   39 TNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188          
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: ELAV1_HUMAN (ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 3.354e-22
Identity = 56/152 (36.84%), Postives = 88/152 (57.89%), Query Frame = 2
Query:  212 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNG 664
            T+L V  L  N+T  +L  LFS +G+V S ++ RD     SLGYG+VNY    DA RA++ LN   L +K+I++ Y+   PS       N++I  L +++  K + D FS FG I++ ++  D  +G S+G  F++F+ +  A+ AI   NG
Sbjct:   20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR--PSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169          
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: ELAV2_XENLA (ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 4.380e-22
Identity = 57/153 (37.25%), Postives = 91/153 (59.48%), Query Frame = 2
Query:  212 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTR-RSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 664
            T+L V  L  N+T  +L  LF  +G++ S ++ RD  T  +SLGYG+VNY +P DA +A++ LN   L  K+I++ Y+   PS       N+++  L K++  K L   FS +G I++ +I  D  +G S+G GF++F+ +  A+ AI  LNG
Sbjct:   66 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 216          
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: ELV1B_XENLA (ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-B PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.721e-22
Identity = 55/152 (36.18%), Postives = 89/152 (58.55%), Query Frame = 2
Query:  212 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNG 664
            T+L V  L  N+T  +L  LFS +G+V S ++ RD     SLGYG+VNY N  DA RA++ LN   L +K+I++ ++   PS       N++I  L +++  K + D F  FG+I++ ++  D  +G S+G  F++F+ +  A+ AI   NG
Sbjct:   20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFAR--PSSETIKDANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 169          
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: ELAV_DROME (Protein elav OS=Drosophila melanogaster GN=elav PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.721e-22
Identity = 65/199 (32.66%), Postives = 106/199 (53.27%), Query Frame = 2
Query:  113 EVVVMAQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLST-------------RRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSG--QSKGFGFVQFENKESAQNAIDKLNG 664
            + VV    Q Q     +  +G   G++G+    T+L V  L   +T+ ++  LFS VG++ SV++ RD S               +SLGYG+VNY  P DA +A++VLN   L NK+I++ ++   PS       N+++  L K++  + L   F+ FG I++ +I  +     Q+KG GF++F+ +E A  AI  LNG
Sbjct:  116 QAVVPQPQQAQPNTNGNAGSGSQNGSNGSTETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFAR--PSSDAIKGANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNG 312          
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: ELAV1_XENTR (ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl1 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.664e-21
Identity = 55/152 (36.18%), Postives = 87/152 (57.24%), Query Frame = 2
Query:  212 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNG 664
            T+L V  L  N+T  +L  LFS +G+V S ++ RD     SLGYG+VNY N  DA RA++ LN   L +K+I++  +   PS       N++I  L +++  K + D F  FG I++ ++  D  +G S+G  F++F+ +  A+ AI   NG
Sbjct:   20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSVAR--PSSESIKDANLYISGLPRTMTQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 169          
BLAST of EY711434 vs. ExPASy Swiss-Prot
Match: ELAV1_MOUSE (ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.843e-21
Identity = 55/152 (36.18%), Postives = 86/152 (56.58%), Query Frame = 2
Query:  212 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNG 664
            T+L V  L  N+T  +L  LFS +G+V S ++ RD     SLGYG+VNY    DA RA+  LN   L +K+I++ Y+   PS       N++I  L +++  K + D FS FG I++ ++  D  +G S+G  F++F+ +  A+ AI    G
Sbjct:   20 TNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYAR--PSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFIG 169          
The following BLAST results are available for this feature:
BLAST of EY711434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 168
Match NameE-valueIdentityDescription
ELAV4_MOUSE6.758e-2335.33ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1... [more]
ELAV4_HUMAN6.758e-2335.33ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1... [more]
ELAV3_XENTR1.505e-2233.92ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl... [more]
ELAV2_RAT2.568e-2236.84ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2... [more]
ELAV1_HUMAN3.354e-2236.84ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1... [more]
ELAV2_XENLA4.380e-2237.25ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE... [more]
ELV1B_XENLA5.721e-2236.18ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-... [more]
ELAV_DROME5.721e-2232.66Protein elav OS=Drosophila melanogaster GN=elav PE... [more]
ELAV1_XENTR1.664e-2136.18ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl... [more]
ELAV1_MOUSE4.843e-2136.18ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-007-F08-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711434 ID=EY711434; Name=EY711434; organism=Citrus sinensis; type=EST; length=927bp
CCACGCGTCCGATAGAATCAGATTATTTATCCTGTTATCTCTCTAGATTT
TTATTTGAGAACTAGCAAGAGAAGAGGGAAATAAAAAAGCCAAAAAAAAA
AAGAAGGATCTAGAAGTGGTAGTGATGGCACAGATTCAGGTGCAACATCA
AGCGCAAATGTCGGGGCCAAACGGAGTGGCGGCGGGTGCGTCAGGGAACC
AGTTCCTAACGACGTCTCTTTATGTTGGCGATCTCGATTTCAACGTGACC
GATTCGCAGCTTTATGATCTGTTCAGCCAGGTCGGTCAAGTTCTGTCGGT
TAGGGTTTGTCGGGACCTGAGCACCAGGCGCTCACTCGGCTATGGTTACG
TTAACTACGCCAACCCTGCAGATGCGGCAAGGGCACTGGATGTTCTTAAC
TTCACTCCACTTAATAATAAGTCCATTAGAATCATGTATTCCCATCGGGA
TCCTAGTATTCGGAAAAGCGGTACTGGGAACATATTTATCAAGAATTTGG
ACAAGTCTATTGATCACAAAGCATTACACGATACATTTTCTTCATTCGGA
AACATTCTTTCTTGTAAGATAGCTACTGATGGTTCTGGCCAGTCCAAAGG
TTTCGGTTTTGTGCAATTTGAGAACAAAGAATCTGCTCAAAATGCTATTG
ATAAGTTAAATGGCATGCTTATTAATGATAAACAAGTNGTTGTTGGGCAC
TTTCTTCGTAAGCAGGAAAGAGAACTGTAGCAATTAAAACAAATTTCATA
ACGTATTTGTCAAAACCTTGCTGAGTCACTACAGATGAAGATTTGAAGAA
ATTTTTGGTGAGTATGGAACATTACANTGCANTANTGATGAGGGATGGAG
ATGGAAAATCCAGTGTTTTGGATTTGTGATTTTTGAAATGCAAATGATGC
TGCCAAGCTGTGGAGCTCTTATGGAAA
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