EY711380

Overview
NameEY711380
Unique NameEY711380
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length942
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711380 vs. ExPASy Swiss-Prot
Match: CSLF6_ORYSJ (Probable mixed-linked glucan synthase 6 OS=Oryza sativa subsp. japonica GN=CSLF6 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 8.457e-29
Identity = 62/116 (53.45%), Postives = 85/116 (73.28%), Query Frame = 3
Query:  207 IGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGR-LKFLERFAYVNTTIYPLTAIPLLMYCTLPAVCLLTNKFIM 551
            IGW+YG+VTED++TG++MH +GWRS YC     AF G+APINL++RL QVLRW+ GS+EI FSR+ P+   +G   L  L+R AY+N T YP TA+ L+ Y T+PA+  +T  FI+
Sbjct:  626 IGWVYGTVTEDVVTGYRMHIKGWRSRYCSIYPHAFIGTAPINLTERLFQVLRWSTGSLEIFFSRNNPL---FGSTFLHPLQRVAYINITTYPFTALFLIFYTTVPALSFVTGHFIV 738          
BLAST of EY711380 vs. ExPASy Swiss-Prot
Match: CSLF9_ORYSJ (Probable mixed-linked glucan synthase 9 OS=Oryza sativa subsp. japonica GN=CSLF9 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 2.083e-27
Identity = 53/108 (49.07%), Postives = 82/108 (75.93%), Query Frame = 3
Query:  207 IGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKFLERFAYVNTTIYPLTAIPLLMYCTLPAVCL 530
            +GW+Y   TED++TGF++H +GWRS+YC  +  AF+G+APINL++RL Q+LRW+ GS+E+ FSR+CP+  G   RL+ ++R AY N T YP++A+ +++Y  LP + L
Sbjct:  555 VGWVYDIATEDVVTGFRLHRKGWRSMYCAMEPDAFRGTAPINLTERLYQILRWSGGSLEMFFSRNCPLLAGC--RLRPMQRVAYANMTAYPVSALFMVVYDLLPVIWL 660          
BLAST of EY711380 vs. ExPASy Swiss-Prot
Match: CSLF3_ORYSJ (Probable mixed-linked glucan synthase 3 OS=Oryza sativa subsp. japonica GN=CSLF3 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.701e-26
Identity = 54/122 (44.26%), Postives = 88/122 (72.13%), Query Frame = 3
Query:  207 IGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKFLERFAYVNTTIYPLTAIPLLMYCTLPAVCLLTNKFIMPQVFNHY 572
            +G+IY   TEDI+TGF++H +GWRS+YC  +  AF G+APINL++RL+Q++RW+ GS+E+ FS + P+    G RL+ L+R +Y+N TIYP+T++ +L+Y   P + L+ ++  + + F  Y
Sbjct:  563 VGYIYDIATEDIVTGFRIHGQGWRSMYCTMEHDAFCGTAPINLTERLHQIVRWSGGSLEMFFSHNNPLI--GGRRLQPLQRVSYLNMTIYPVTSLFILLYAISPVMWLIPDEVYIQRPFTRY 682          
BLAST of EY711380 vs. ExPASy Swiss-Prot
Match: CSLF3_ORYSI (Probable mixed-linked glucan synthase 3 OS=Oryza sativa subsp. indica GN=CSLF3 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.701e-26
Identity = 54/122 (44.26%), Postives = 88/122 (72.13%), Query Frame = 3
Query:  207 IGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKFLERFAYVNTTIYPLTAIPLLMYCTLPAVCLLTNKFIMPQVFNHY 572
            +G+IY   TEDI+TGF++H +GWRS+YC  +  AF G+APINL++RL+Q++RW+ GS+E+ FS + P+    G RL+ L+R +Y+N TIYP+T++ +L+Y   P + L+ ++  + + F  Y
Sbjct:  563 VGYIYDIATEDIVTGFRIHGQGWRSMYCTMEHDAFCGTAPINLTERLHQIVRWSGGSLEMFFSHNNPLI--GGRRLQPLQRVSYLNMTIYPVTSLFILLYAISPVMWLIPDEVYIQRPFTRY 682          
BLAST of EY711380 vs. ExPASy Swiss-Prot
Match: CESAB_ORYSJ (Putative cellulose synthase A catalytic subunit 11 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA11 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.264e-24
Identity = 59/125 (47.20%), Postives = 77/125 (61.60%), Query Frame = 3
Query:  204 QIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSR-HCPIWYGYGGRLKFLERFAYVNTTIYPLTAIPLLMYCTLPAVCLLTNKFIMPQVFNHYN 575
            +IGW+YG     + TGF+MHARGW S YC P RPAF+  A  + +D L    R A+ ++ IL SR H P+W G   RL  L+R  YV    YPL ++PL +YC LPAVCLLT K   P   ++Y+
Sbjct:  540 EIGWMYGG---GVATGFRMHARGWSSAYCSPARPAFRRYARASPADVLAGASRRAVAAMGILLSRRHSPVWAGR--RLGLLQRLGYVARASYPLASLPLTVYCALPAVCLLTGKSTFPSDVSYYD 659          
BLAST of EY711380 vs. ExPASy Swiss-Prot
Match: CSLF2_ORYSJ (Mixed-linked glucan synthase 2 OS=Oryza sativa subsp. japonica GN=CSLF2 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.677e-24
Identity = 50/122 (40.98%), Postives = 80/122 (65.57%), Query Frame = 3
Query:  207 IGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKFLERFAYVNTTIYPLTAIPLLMYCTLPAVCLLTNKFIMPQVFNHY 572
            +GW+Y   TED++TGF+MH +GWRS+Y   +  AF+G+APINL++RL Q+LRW+ GS+E+ FS    +    G RL  L+R AY+N + YP+  + +  Y   P + L++ ++ + + F  Y
Sbjct:  569 VGWVYNIATEDVVTGFRMHRQGWRSVYASVEPAAFRGTAPINLTERLYQILRWSGGSLEMFFSHSNALL--AGRRLHPLQRVAYLNMSTYPIVTVFIFFYNLFPVMWLISEQYYIQRPFGEY 688          
BLAST of EY711380 vs. ExPASy Swiss-Prot
Match: CSLF1_ORYSJ (Putative mixed-linked glucan synthase 1 OS=Oryza sativa subsp. japonica GN=CSFL1 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.677e-24
Identity = 50/122 (40.98%), Postives = 80/122 (65.57%), Query Frame = 3
Query:  207 IGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKFLERFAYVNTTIYPLTAIPLLMYCTLPAVCLLTNKFIMPQVFNHY 572
            +GW+Y   TED++TGF+MH +GWRS+Y   +  AF+G+APINL++RL Q+LRW+ GS+E+ FS    +    G RL  L+R AY+N + YP+  + +  Y   P + L++ ++ + + F  Y
Sbjct:  539 VGWVYNIATEDVVTGFRMHRQGWRSVYASVEPAAFRGTAPINLTERLYQILRWSGGSLEMFFSHSNALL--AGRRLHPLQRVAYLNMSTYPIVTVFIFFYNLFPVMWLISEQYYIQRPFGEY 658          
BLAST of EY711380 vs. ExPASy Swiss-Prot
Match: CSLF4_ORYSJ (Mixed-linked glucan synthase 4 OS=Oryza sativa subsp. japonica GN=CSLF4 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 6.272e-24
Identity = 51/121 (42.15%), Postives = 78/121 (64.46%), Query Frame = 3
Query:  210 GWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKFLERFAYVNTTIYPLTAIPLLMYCTLPAVCLLTNKFIMPQVFNHY 572
            GW+Y   TED+ TGF+MH +GWRS+Y   +  AF+G+APINL++RL Q+LRW+ GS+E+ FS    +    G RL  L+R AY+N + YP+  + +  Y   P + L++ ++ + Q F  Y
Sbjct:  579 GWVYDIATEDVATGFRMHQQGWRSVYTSMEPAAFRGTAPINLTERLYQILRWSGGSLEMFFSHSNALL--AGRRLHPLQRIAYLNMSTYPIVTVFIFFYNLFPVMWLISEQYYIQQPFGEY 697          
BLAST of EY711380 vs. ExPASy Swiss-Prot
Match: CSLB1_ARATH (Cellulose synthase-like protein B1 OS=Arabidopsis thaliana GN=CSLB1 PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 5.870e-22
Identity = 52/117 (44.44%), Postives = 72/117 (61.54%), Query Frame = 3
Query:  207 IGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKFLERFAYVNTTIYPLTAIPLLMYCTLPAVCLLTNKFIMPQ 557
            IGW+Y SV ED+ T   +H+RGW S Y  P  PAF GS P  + + L Q  RWA G +EILF++  P+   +  +++F +R AY+   I  L +IP L+YC LPA CLL N  + P+
Sbjct:  452 IGWLYDSVAEDLNTSIGIHSRGWTSSYISPDTPAFLGSMPAGVPEALLQQRRWATGWIEILFNKQSPLRGLFSKKIRFRQRLAYL-CIITCLRSIPELIYCLLPAYCLLHNSTLFPK 567          
BLAST of EY711380 vs. ExPASy Swiss-Prot
Match: CSLH2_ORYSJ (Cellulose synthase-like protein H2 OS=Oryza sativa subsp. japonica GN=CSLH2 PE=2 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 7.667e-22
Identity = 55/118 (46.61%), Postives = 73/118 (61.86%), Query Frame = 3
Query:  204 QIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKFLERFAYVNTTIYPLTAIPLLMYCTLPAVCLLTNKFIMPQ 557
            ++GW+YGS+TEDILTG ++HA GWRS+  + + PAF GSAPI     L Q  RWA G  EI+ SR+ PI      RLKF +  AY+    +PL A   L Y  L   C+LTN+  +P+
Sbjct:  459 EVGWVYGSLTEDILTGQRIHAMGWRSVLMVTEPPAFMGSAPIGGPACLTQFKRWATGQSEIIISRNNPILATMFKRLKFRQCLAYLIVLGWPLRAPFELCYGLLGPYCILTNQSFLPK 576          
The following BLAST results are available for this feature:
BLAST of EY711380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CSLF6_ORYSJ8.457e-2953.45Probable mixed-linked glucan synthase 6 OS=Oryza s... [more]
CSLF9_ORYSJ2.083e-2749.07Probable mixed-linked glucan synthase 9 OS=Oryza s... [more]
CSLF3_ORYSJ6.701e-2644.26Probable mixed-linked glucan synthase 3 OS=Oryza s... [more]
CSLF3_ORYSI6.701e-2644.26Probable mixed-linked glucan synthase 3 OS=Oryza s... [more]
CESAB_ORYSJ1.264e-2447.20Putative cellulose synthase A catalytic subunit 11... [more]
CSLF2_ORYSJ3.677e-2440.98Mixed-linked glucan synthase 2 OS=Oryza sativa sub... [more]
CSLF1_ORYSJ3.677e-2440.98Putative mixed-linked glucan synthase 1 OS=Oryza s... [more]
CSLF4_ORYSJ6.272e-2442.15Mixed-linked glucan synthase 4 OS=Oryza sativa sub... [more]
CSLB1_ARATH5.870e-2244.44Cellulose synthase-like protein B1 OS=Arabidopsis ... [more]
CSLH2_ORYSJ7.667e-2246.61Cellulose synthase-like protein H2 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-007-A12-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711380 ID=EY711380; Name=EY711380; organism=Citrus sinensis; type=EST; length=942bp
CACTGGTCATATCTTGTCACTATNCCGGAATTCTTACGTCGACCCACGCG
TCCGCCCACGCGTTCTCCTATTATAATTCCAGTTCATCTGTAAATAATAT
GGCACACCCACCAACACACATTTCTTATTGAAGAAATAACTTGCATTCTC
TTTGTTATCATTTCAGTTTCTCTTGCAAACACCGATTTTTGTCTCTTGCT
CTGCAGATAGGATGGATTTATGGTTCTGTTACGGAAGATATTCTTACAGG
ATTCAAGATGCATGCCCGTGGTTGGCGGTCAATTTACTGCATGCCTAAGC
GCCCAGCCTTTAAAGGGTCTGCTCCTATTAATCTTTCAGATCGTCTAAAC
CAAGTGCTTCGGTGGGCTCTAGGTTCTGTGGAAATTCTTTTCAGTCGGCA
CTGTCCTATCTGGTATGGTTATGGTGGTCGATTGAAATTTCTTGAGAGGT
TTGCTTATGTGAACACCACTATCTATCCTCTCACTGCAATTCCTCTTCTC
ATGTATTGCACGCTGCCAGCTGTCTGTCTATTAACGAACAAGTTCATTAT
GCCTCAGGTATTTAATCATTACAATTACATCACTAGTTCACTTTTCTAAT
ATTTCAAGTTTGTGAAAATAGACTTCATACCCTAAAATTCTTTTGGTTGG
CTCATTTTCTTGCAGATTACTAACCCTTGCCAGAATAGGGTTTATTTCTC
CTCTTTCTGTCCATCTTCGCCACTGGTATTCTGGAAAAGAAGTGGAGTGC
TGTTTGGAACCATGGATGGGTGGAAAACGAACAGTTCGGGGTATTGGCCG
CGTTTCATCCCTCTATTTGCTGGTTTCCAAGGTCTCCTCAAGTACTTGCT
GGAATTGAACCCAACTCCCCTGTCCCTTCAAGCCACTCGAGGAGAACGAG
ATTTTACTGGACTCATATGGTAAATGGAAAAACCTCCTTACT
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