EY711324

Overview
NameEY711324
Unique NameEY711324
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length615
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711324 vs. ExPASy Swiss-Prot
Match: RECA_PSE14 (Protein recA OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=recA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.198e-12
Identity = 37/45 (82.22%), Postives = 37/45 (82.22%), Query Frame = -1
Query:    1 MDDNXXXXXXXXLGQIERQFGKGAVMRMGDHDRQAIPAISTGSLG 135
            MDDN        LGQIERQFGKGAVMRMGDHDRQAIPAISTGSLG
Sbjct:    1 MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLG 45          
BLAST of EY711324 vs. ExPASy Swiss-Prot
Match: CINAL_ANAD2 (CinA-like protein OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=A2cp1_3752 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.021e-12
Identity = 41/102 (40.20%), Postives = 54/102 (52.94%), Query Frame = -2
Query:  285 SXLFEAGYVRYSIRKKTRQWNVRKALFPKVGAVSREVLEAMVRGAQEKSLARFAVAVSGVAGPDGGSPDKPVGTVWLAWGVGDEVTTELEHFPGNRDEVRRQ 590
            S + + G V Y+   K R   V   L    GAVS  V  A+  GA+    A + V ++G+AGP GG+P+KPVGTV LA        T    + G+RD VRRQ
Sbjct:  293 SAVLDLGVVAYANAAKERVLGVPAELLAAHGAVSEPVARALAEGARRAGGAAWGVGITGIAGPSGGTPEKPVGTVHLAVAGPSGTETVARAYRGDRDRVRRQ 394          
BLAST of EY711324 vs. ExPASy Swiss-Prot
Match: CINA_THEP3 (Putative competence-damage inducible protein OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=cinA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.640e-12
Identity = 37/107 (34.58%), Postives = 59/107 (55.14%), Query Frame = -2
Query:  279 SRKSXLFEAGYVRYSIRKKTRQWNVRKALFPKVGAVSREVLEAMVRGAQEKSLARFAVAVSGVAGPDGGSPDKPVGTVWLAWGVGDEVTTELEHFPGNRDEVRRQTV 599
            S  S +F  G V YS   K     VRK+     GAVS E  + M    ++ + A F ++ +G+AGP GG+P+KPVG V++ +   ++V  +     G+R ++R +TV
Sbjct:  290 SGASKVFNLGVVSYSNEAKENILGVRKSTLESYGAVSHETAKEMAENIRKLANADFGLSTTGIAGPTGGTPEKPVGLVYVGFATNEKVYVKKLMLSGDRSKIRTRTV 396          
BLAST of EY711324 vs. ExPASy Swiss-Prot
Match: CINA_CLONN (Putative competence-damage inducible protein OS=Clostridium novyi (strain NT) GN=cinA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.640e-12
Identity = 36/104 (34.62%), Postives = 59/104 (56.73%), Query Frame = -2
Query:  279 SXLFEAGYVRYSIRKKTRQWNVRKALFPKVGAVSREVLEAMVRGAQEKSLARFAVAVSGVAGPDGGSPDKPVGTVWLAWGVGDEVTTELEHFPGNRDEVRRQTV 590
            S +F+ G + YS   K ++  V+K    K GAVS +    M  G  + + +   ++ +G+AGPDGG+ +KPVG V++   +  +V T+  H  G+R  VR+ TV
Sbjct:  294 SSVFKEGMITYSNEAKMKRIKVKKDTLQKYGAVSSQTAAEMAEGVAKVTGSDIGISTTGIAGPDGGTKEKPVGLVYVGICIKGDVKTKELHLVGDRQRVRQHTV 397          
BLAST of EY711324 vs. ExPASy Swiss-Prot
Match: CINAL_MYCGI (CinA-like protein OS=Mycobacterium gilvum (strain PYR-GCK) GN=Mflv_3280 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.448e-12
Identity = 43/98 (43.88%), Postives = 54/98 (55.10%), Query Frame = -2
Query:  282 GYVRYSIRKKTRQWNVRKALFPKVGAVSREVLEAMVRGAQEKSLARFAVAVSGVAGPDGGSPDKPVGTVWLAWGVGD-EVTTELEHFPGNRDEVRRQT 572
            G V YS   KT    V   L    GAVS  V EAM  GA ++  A  AVA++G+AGP GG+P KPVGTV  +  + D    T     PGNR +VR ++
Sbjct:  309 GVVSYSNDAKTDLLGVDAELIAAHGAVSEPVAEAMAAGALQRFGADTAVAITGIAGPGGGTPAKPVGTVCFSVALADGTFLTRTSQLPGNRSDVRERS 406          
BLAST of EY711324 vs. ExPASy Swiss-Prot
Match: RECA_PSEPU (Protein recA OS=Pseudomonas putida GN=recA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.485e-12
Identity = 36/45 (80.00%), Postives = 37/45 (82.22%), Query Frame = -1
Query:    1 MDDNXXXXXXXXLGQIERQFGKGAVMRMGDHDRQAIPAISTGSLG 135
            MDDN        LGQIERQFGKGAVMRMGDH+RQAIPAISTGSLG
Sbjct:    1 MDDNKKRALAAALGQIERQFGKGAVMRMGDHERQAIPAISTGSLG 45          
BLAST of EY711324 vs. ExPASy Swiss-Prot
Match: RECA_PSEE4 (Protein recA OS=Pseudomonas entomophila (strain L48) GN=recA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.485e-12
Identity = 36/45 (80.00%), Postives = 37/45 (82.22%), Query Frame = -1
Query:    1 MDDNXXXXXXXXLGQIERQFGKGAVMRMGDHDRQAIPAISTGSLG 135
            MDDN        LGQIERQFGKGAVMRMGDH+RQAIPAISTGSLG
Sbjct:    1 MDDNKKRALAAALGQIERQFGKGAVMRMGDHERQAIPAISTGSLG 45          
BLAST of EY711324 vs. ExPASy Swiss-Prot
Match: CINAL_ANADE (CinA-like protein OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=Adeh_3614 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.503e-12
Identity = 40/102 (39.22%), Postives = 55/102 (53.92%), Query Frame = -2
Query:  285 SXLFEAGYVRYSIRKKTRQWNVRKALFPKVGAVSREVLEAMVRGAQEKSLARFAVAVSGVAGPDGGSPDKPVGTVWLAWGVGDEVTTELEHFPGNRDEVRRQ 590
            S + + G V Y+   K +   V  AL    GAVS  V  A+  GA+  + A + V ++G+AGP GG+P+KPVGTV LA             + G+RD VRRQ
Sbjct:  293 SAVLDLGVVAYANAAKEQVLGVPAALLAAHGAVSEPVARALAEGARRTAGAAWGVGITGIAGPSGGTPEKPVGTVHLAVAGPSGTEAVARAYRGDRDRVRRQ 394          
BLAST of EY711324 vs. ExPASy Swiss-Prot
Match: CINA_SYMTH (Putative competence-damage inducible protein OS=Symbiobacterium thermophilum GN=cinA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.881e-12
Identity = 39/78 (50.00%), Postives = 47/78 (60.26%), Query Frame = -2
Query:  357 SXLFEAGYVRYSIRKKTRQWNVRKALFPKVGAVSREVLEAMVRGAQEKSLARFAVAVSGVAGPDGGSPDKPVGTVWLA 590
            S  F  G+V Y+   K     V + L    GAVS  V  AM  GA ++S A  AVAVSG+AGPDGG+P+KPVGTV  A
Sbjct:  298 SRYFGTGFVTYANEAKVSLLGVPEELLSAHGAVSEPVARAMAEGALQRSGADVAVAVSGIAGPDGGTPEKPVGTVCFA 375          
BLAST of EY711324 vs. ExPASy Swiss-Prot
Match: CINAL_MYCS2 (CinA-like protein OS=Mycobacterium smegmatis GN=MSMEG_3512 PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 5.881e-12
Identity = 41/97 (42.27%), Postives = 51/97 (52.58%), Query Frame = -2
Query:  282 GYVRYSIRKKTRQWNVRKALFPKVGAVSREVLEAMVRGAQEKSLARFAVAVSGVAGPDGGSPDKPVGTVWLAWGVGDEVTTELEHFPGNRDEVRRQT 572
            G V Y+   K    NV   L  + GAVS  V EAM  GA     A  AVA++G+AGP GGS +KPVGTV  A        T     PGNR ++R ++
Sbjct:  314 GIVAYANTPKAEMLNVDPVLIAEHGAVSEPVAEAMATGAMHHFEADTAVAITGIAGPGGGSTEKPVGTVCFAVRAEGASITRTLLLPGNRSDIRERS 410          
The following BLAST results are available for this feature:
BLAST of EY711324 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
RECA_PSE141.198e-1282.22Protein recA OS=Pseudomonas syringae pv. phaseolic... [more]
CINAL_ANAD22.021e-1240.20CinA-like protein OS=Anaeromyxobacter dehalogenans... [more]
CINA_THEP32.640e-1234.58Putative competence-damage inducible protein OS=Th... [more]
CINA_CLONN2.640e-1234.62Putative competence-damage inducible protein OS=Cl... [more]
CINAL_MYCGI3.448e-1243.88CinA-like protein OS=Mycobacterium gilvum (strain ... [more]
RECA_PSEPU3.485e-1280.00Protein recA OS=Pseudomonas putida GN=recA PE=3 SV... [more]
RECA_PSEE43.485e-1280.00Protein recA OS=Pseudomonas entomophila (strain L4... [more]
CINAL_ANADE4.503e-1239.22CinA-like protein OS=Anaeromyxobacter dehalogenans... [more]
CINA_SYMTH5.881e-1250.00Putative competence-damage inducible protein OS=Sy... [more]
CINAL_MYCS25.881e-1242.27CinA-like protein OS=Mycobacterium smegmatis GN=MS... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-006-D09-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711324 ID=EY711324; Name=EY711324; organism=Citrus sinensis; type=EST; length=615bp
ACCCAGAGAGCCAGTAGAGATAGCCGGGATCGCCTGACGGTCGTGATCGC
CCATACGCATTACGGCACCCTTGCCGAATTGACGTTCGATCTGACCCAGG
GCCGCAGCCAAGGCTTTCTTCTTGTTGTCGTCCATTAAAGTCCTCACGTA
ATCAATAAGGCCTGGCGGCCAACACCTGTATAAGTAGACAGTATTGTTCC
ACAAAGATCCGTGATCGCCTACCCCTGTTTTTCTATTTCTGCTGCAGCTC
GTCGCAACAAGCCCTCTAGCGCGGCCTTTACCGTTTGTCGGCGGACCTCG
TCACGGTTCCCAGGGAAGTGTTCAAGCTCGGTGGTGACCTCATCGCCCAC
GCCCCAGGCCAGCCATACGGTGCCCACCGGTTTGTCCGGCGAACCGCCAT
CGGGGCCGGCCACACCGCTGACCGCTACGGCAAAACGCGCCAGGCTTTTC
TCCTGGGCACCTCGCACCATCGCCTCCAACACTTCGCGACTGACAGCCCC
GACTTTGGGGAACAGCGCTTTCCGGACATTCCACTGCCGGGTCTTCTTGC
GGATGGAATACCTGACATAGCCCGCCTCGAACAGGNCAGACTTCCGGGAA
TCGCGGGATGGCCTG
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