EY711324

Overview
NameEY711324
Unique NameEY711324
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length615
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711324 vs. ExPASy Swiss-Prot
Match: CINA_CALS8 (Putative competence-damage inducible protein OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=cinA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.503e-11
Identity = 35/105 (33.33%), Postives = 57/105 (54.29%), Query Frame = -2
Query:  276 SXLFEAGYVRYSIRKKTRQWNVRKALFPKVGAVSREVLEAMVRGAQEKSLARFAVAVSGVAGPDGGSPDKPVGTVWLAWGVGDEVTTELEHFPGNRDEVRRQTVK 590
            S +F+ G++ YS   K ++  V +      GAVS EV + M +GA + SLA  A++ +G+AGP G +  KPVG V++     + V +    F G+R  ++    K
Sbjct:  294 SNVFDRGFITYSNEAKVKELGVSEETLKNFGAVSHEVAKQMAQGALKTSLADIAISTTGIAGPTGATETKPVGLVYIGVATKNYVDSFEFRFSGDRLRIKEAASK 398          
BLAST of EY711324 vs. ExPASy Swiss-Prot
Match: CINAL_THESQ (CinA-like protein OS=Thermotoga sp. (strain RQ2) GN=TRQ2_0225 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.503e-11
Identity = 38/103 (36.89%), Postives = 60/103 (58.25%), Query Frame = -2
Query:  282 SXLFEAGYVRYSIRKKTRQWNVRKALFPKVGAVSREVLEAMVRGAQEKSLARFAVAVSGVAGPDGGSPDKPVGTVWLAWGVGDEVTTELEHFPGNRDEVRRQT 590
            S +F  G V YS   K     VR+    K GAVS E ++ M  G ++ + A   V++SG+AGP GG+P+KPVGTV++     + +T    +F G+R+ +R ++
Sbjct:  289 SEVFIGGVVAYSNDLKKHILGVREDTLKKHGAVSEECVQEMTEGLKKLTGADICVSISGIAGPSGGTPEKPVGTVFIDIFEHEHITMRY-NFTGDRNMIRTRS 390          
BLAST of EY711324 vs. ExPASy Swiss-Prot
Match: CINAL_THEMA (CinA-like protein OS=Thermotoga maritima GN=TM_0703 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.503e-11
Identity = 38/103 (36.89%), Postives = 60/103 (58.25%), Query Frame = -2
Query:  282 SXLFEAGYVRYSIRKKTRQWNVRKALFPKVGAVSREVLEAMVRGAQEKSLARFAVAVSGVAGPDGGSPDKPVGTVWLAWGVGDEVTTELEHFPGNRDEVRRQT 590
            S +F  G V YS   K     VR+    K GAVS E ++ M  G ++ + A   V++SG+AGP GG+P+KPVGTV++     + +T    +F G+R+ +R ++
Sbjct:  289 SEVFIGGVVAYSNDLKKHILGVREDTLKKHGAVSEECVQEMTEGLKKLTGADICVSISGIAGPSGGTPEKPVGTVFIDIFEHEHITMRY-NFTGDRNMIRTRS 390          
BLAST of EY711324 vs. ExPASy Swiss-Prot
Match: CINAL_CHLCH (CinA-like protein OS=Chlorobium chlorochromatii (strain CaD3) GN=Cag_0143 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.503e-11
Identity = 38/84 (45.24%), Postives = 48/84 (57.14%), Query Frame = -2
Query:  348 SRKSXLFEAGYVRYSIRKKTRQWNVRKALFPKVGAVSREVLEAMVRGAQEKSLARFAVAVSGVAGPDGGSPDKPVGTVWLAWGV 599
            S  S  F+ G+V YS   K R   V        GAVS EV + M  G  EKS A FA+A +G+AGP GG+P+KP+GT+  A  V
Sbjct:  296 SGASTYFQQGFVVYSNEAKERALGVPHETLVAHGAVSEEVAQGMALGCLEKSGADFALATTGIAGPTGGTPEKPLGTLCYAIAV 379          
BLAST of EY711324 vs. ExPASy Swiss-Prot
Match: CINAL_BACFR (CinA-like protein OS=Bacteroides fragilis GN=BF2430 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.503e-11
Identity = 36/87 (41.38%), Postives = 47/87 (54.02%), Query Frame = -2
Query:  330 SXLFEAGYVRYSIRKKTRQWNVRKALFPKVGAVSREVLEAMVRGAQEKSLARFAVAVSGVAGPDGGSPDKPVGTVWLAWGVGDEVTT 590
            S  F+   + Y+   KT    V      K GAVS E +  MV+GA +      AVA SG+AGP GG+ +KPVGTVW+A     E+ T
Sbjct:  295 SEYFKGSIIAYANEVKTELLGVSMETLEKRGAVSEETVIEMVKGAMKALKTDCAVATSGIAGPSGGTEEKPVGTVWIAAAYKSEICT 381          
BLAST of EY711324 vs. ExPASy Swiss-Prot
Match: CINAL_SHEON (CinA-like protein OS=Shewanella oneidensis GN=SO_0272 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.493e-11
Identity = 42/101 (41.58%), Postives = 55/101 (54.46%), Query Frame = -2
Query:  291 SXLFEAGYVRYSIRKKTRQWNVRKALFPKVGAVSREVLEAMVRGAQEKSLARFAVAVSGVAGPDGGSPDKPVGTVWLAWGVGDEVTTELEHFP-GNRDEVR 590
            S   + G V YS   K R   V  A     GAVS   +E M +GA+    + FA+A SG+AGPDGG+ DKPVGTV +A      V +++   P  +RD VR
Sbjct:  292 SSYLQHGLVTYSNESKVRVLGVNPATLDDHGAVSIPTVEEMAKGARAILDSDFALATSGIAGPDGGTEDKPVGTVAIALATRSGVYSQMIKLPRRSRDLVR 392          
BLAST of EY711324 vs. ExPASy Swiss-Prot
Match: RECA_PSEPG (Protein recA OS=Pseudomonas putida (strain GB-1) GN=recA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.585e-11
Identity = 34/45 (75.56%), Postives = 35/45 (77.78%), Query Frame = -1
Query:    1 MDDNXXXXXXXXLGQIERQFGKGAVMRMGDHDRQAIPAISTGSLG 135
            MDDN        LGQIERQFGKGAVMRMGD +RQ IPAISTGSLG
Sbjct:    1 MDDNKKRALAAALGQIERQFGKGAVMRMGDQERQGIPAISTGSLG 45          
The following BLAST results are available for this feature:
BLAST of EY711324 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
CINA_CALS86.503e-1133.33Putative competence-damage inducible protein OS=Ca... [more]
CINAL_THESQ6.503e-1136.89CinA-like protein OS=Thermotoga sp. (strain RQ2) G... [more]
CINAL_THEMA6.503e-1136.89CinA-like protein OS=Thermotoga maritima GN=TM_070... [more]
CINAL_CHLCH6.503e-1145.24CinA-like protein OS=Chlorobium chlorochromatii (s... [more]
CINAL_BACFR6.503e-1141.38CinA-like protein OS=Bacteroides fragilis GN=BF243... [more]
CINAL_SHEON8.493e-1141.58CinA-like protein OS=Shewanella oneidensis GN=SO_0... [more]
RECA_PSEPG8.585e-1175.56Protein recA OS=Pseudomonas putida (strain GB-1) G... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-006-D09-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711324 ID=EY711324; Name=EY711324; organism=Citrus sinensis; type=EST; length=615bp
ACCCAGAGAGCCAGTAGAGATAGCCGGGATCGCCTGACGGTCGTGATCGC
CCATACGCATTACGGCACCCTTGCCGAATTGACGTTCGATCTGACCCAGG
GCCGCAGCCAAGGCTTTCTTCTTGTTGTCGTCCATTAAAGTCCTCACGTA
ATCAATAAGGCCTGGCGGCCAACACCTGTATAAGTAGACAGTATTGTTCC
ACAAAGATCCGTGATCGCCTACCCCTGTTTTTCTATTTCTGCTGCAGCTC
GTCGCAACAAGCCCTCTAGCGCGGCCTTTACCGTTTGTCGGCGGACCTCG
TCACGGTTCCCAGGGAAGTGTTCAAGCTCGGTGGTGACCTCATCGCCCAC
GCCCCAGGCCAGCCATACGGTGCCCACCGGTTTGTCCGGCGAACCGCCAT
CGGGGCCGGCCACACCGCTGACCGCTACGGCAAAACGCGCCAGGCTTTTC
TCCTGGGCACCTCGCACCATCGCCTCCAACACTTCGCGACTGACAGCCCC
GACTTTGGGGAACAGCGCTTTCCGGACATTCCACTGCCGGGTCTTCTTGC
GGATGGAATACCTGACATAGCCCGCCTCGAACAGGNCAGACTTCCGGGAA
TCGCGGGATGGCCTG
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