EY711314

Overview
NameEY711314
Unique NameEY711314
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length333
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711314 vs. ExPASy Swiss-Prot
Match: MDTC_SALAR (Multidrug resistance protein mdtC OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=mdtC PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.461e-22
Identity = 49/108 (45.37%), Postives = 76/108 (70.37%), Query Frame = 3
Query:    6 ENERLAAWANENQAVLLNIQRQPGANVIEVVDRIKALLPSITDNLPAGLDVTVLTDRTQTIRASVKDVQHELLIAIALVVMVTFLFLRRFSATIIPSIAVPLSLVGTF 329
            ++ R A   N   A+LL I++ P  N+I+ VD I+A LP +   +PA +D+ +  DR+ TIRAS+++V+  L I++ALV++V FLFLR   AT+IP++AVP+SL+ TF
Sbjct:  267 QDVRNAGMTNAKPAILLMIRKLPETNIIQTVDSIRAKLPELQAMIPAAIDLQIAQDRSPTIRASLQEVEETLAISVALVILVVFLFLRSGRATLIPAVAVPVSLISTF 374          
BLAST of EY711314 vs. ExPASy Swiss-Prot
Match: MDTC_ERWT9 (Multidrug resistance protein mdtC OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=mdtC PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.614e-21
Identity = 49/108 (45.37%), Postives = 76/108 (70.37%), Query Frame = 3
Query:    6 ENERLAAWANENQAVLLNIQRQPGANVIEVVDRIKALLPSITDNLPAGLDVTVLTDRTQTIRASVKDVQHELLIAIALVVMVTFLFLRRFSATIIPSIAVPLSLVGTF 329
            ++ R A  +N   AVLL I++ P AN+I+ VDRI+  +P + + LPA + + +  D ++TIRAS+ +V+  L I++ LVV+V F FLR   AT+IP++AVP+SL+GTF
Sbjct:  267 QDVRNAGMSNARPAVLLVIRKSPQANIIDTVDRIRGEVPELRNTLPASIGLDIAQDSSRTIRASLHEVEQSLAISVGLVVLVVFAFLRSGRATLIPAVAVPVSLIGTF 374          
BLAST of EY711314 vs. ExPASy Swiss-Prot
Match: BEPE_BRUSU (Efflux pump membrane transporter bepE OS=Brucella suis GN=bepE PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.041e-16
Identity = 41/99 (41.41%), Postives = 65/99 (65.66%), Query Frame = 3
Query:   33 NENQAVLLNIQRQPGANVIEVVDRIKALLPSITDNLPAGLDVTVLTDRTQTIRASVKDVQHELLIAIALVVMVTFLFLRRFSATIIPSIAVPLSLVGTF 329
            N   AV + I  QPGAN +  ++ I+  +  +  + PAG+D  +  D T+ I+ S+++V H  + AI LVV+V F+FL+ + AT+IP IAVP+S++GTF
Sbjct:  284 NGTPAVPIAIYLQPGANALNTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKVSIEEVVHTFIEAIILVVLVVFIFLQNWRATLIPVIAVPISIIGTF 382          
BLAST of EY711314 vs. ExPASy Swiss-Prot
Match: BEPG_BRUSU (Efflux pump membrane transporter bepG OS=Brucella suis GN=bepG PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.463e-14
Identity = 36/99 (36.36%), Postives = 62/99 (62.63%), Query Frame = 3
Query:   33 NENQAVLLNIQRQPGANVIEVVDRIKALLPSITDNLPAGLDVTVLTDRTQTIRASVKDVQHELLIAIALVVMVTFLFLRRFSATIIPSIAVPLSLVGTF 329
            N   A ++ + + PG+N +   + ++ ++  +  + PAGLD  +  D T  + +++ +V   LL A  LVV+V F+FL  F AT+IP++AVP+SL+GTF
Sbjct:  284 NGKPASVIAVYQAPGSNAVAAAEGVRNVMEQLKQSFPAGLDYKITYDTTVFVSSTIHEVIKTLLEAFVLVVVVVFIFLGNFRATLIPTLAVPVSLIGTF 382          
BLAST of EY711314 vs. ExPASy Swiss-Prot
Match: TTGH_PSEPU (Toluene efflux pump membrane transporter ttgH OS=Pseudomonas putida GN=ttgH PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.483e-14
Identity = 38/109 (34.86%), Postives = 65/109 (59.63%), Query Frame = 3
Query:    3 AENERLAAWANENQAVLLNIQRQPGANVIEVVDRIKALLPSITDNLPAGLDVTVLTDRTQTIRASVKDVQHELLIAIALVVMVTFLFLRRFSATIIPSIAVPLSLVGTF 329
            A++  ++A   ++    L ++   G N++E VD +K L+      LP G++V    D T  + AS++ V H +  A+ LV +V +LFL+ F AT+IP++AVP+ L+ TF
Sbjct:  272 ADSFAISAQYKDSPTASLALRLSTGGNLLETVDAVKKLMEQQKAYLPDGVEVIYPYDTTPVVEASIESVVHTIFEAVVLVFLVMYLFLQSFRATLIPTLAVPVVLLATF 380          
BLAST of EY711314 vs. ExPASy Swiss-Prot
Match: SRPB_PSEPU (Solvent-resistant pump membrane transporter srpB OS=Pseudomonas putida GN=srpB PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.483e-14
Identity = 38/109 (34.86%), Postives = 65/109 (59.63%), Query Frame = 3
Query:    3 AENERLAAWANENQAVLLNIQRQPGANVIEVVDRIKALLPSITDNLPAGLDVTVLTDRTQTIRASVKDVQHELLIAIALVVMVTFLFLRRFSATIIPSIAVPLSLVGTF 329
            A++  ++A   ++    L ++   G N++E VD +K L+      LP G++V    D T  + AS++ V H +  A+ LV +V +LFL+ F AT+IP++AVP+ L+ TF
Sbjct:  272 ADSFAISAQYKDSPTASLALRLSTGGNLLETVDAVKKLMEQQKAYLPDGVEVIYPYDTTPVVEASIESVVHTIFEAVVLVFLVMYLFLQSFRATLIPTLAVPVVLLATF 380          
BLAST of EY711314 vs. ExPASy Swiss-Prot
Match: ACRD_ECOLI (Probable aminoglycoside efflux pump OS=Escherichia coli (strain K12) GN=acrD PE=3 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 6.146e-13
Identity = 40/99 (40.40%), Postives = 59/99 (59.60%), Query Frame = 3
Query:   33 NENQAVLLNIQRQPGANVIEVVDRIKALLPSITDNLPAGLDVTVLTDRTQTIRASVKDVQHELLIAIALVVMVTFLFLRRFSATIIPSIAVPLSLVGTF 329
            N   A  L ++   GAN +   + +   L  +    P GL+  V  + T  ++AS++DV   LL AIALV +V +LFL+ F AT+IP+IAVP+ L+GTF
Sbjct:  282 NGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTF 380          
BLAST of EY711314 vs. ExPASy Swiss-Prot
Match: ACRB_ECOLI (Acriflavine resistance protein B OS=Escherichia coli (strain K12) GN=acrB PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.027e-13
Identity = 42/108 (38.89%), Postives = 62/108 (57.41%), Query Frame = 3
Query:    6 ENERLAAWANENQAVLLNIQRQPGANVIEVVDRIKALLPSITDNLPAGLDVTVLTDRTQTIRASVKDVQHELLIAIALVVMVTFLFLRRFSATIIPSIAVPLSLVGTF 329
            EN  + A  N   A  L I+   GAN ++    I+A L  +    P+GL +    D T  ++ S+ +V   L+ AI LV +V +LFL+ F AT+IP+IAVP+ L+GTF
Sbjct:  273 ENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTF 380          
BLAST of EY711314 vs. ExPASy Swiss-Prot
Match: ACRF_ECOLI (Acriflavine resistance protein F OS=Escherichia coli (strain K12) GN=acrF PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.369e-12
Identity = 42/108 (38.89%), Postives = 59/108 (54.63%), Query Frame = 3
Query:    6 ENERLAAWANENQAVLLNIQRQPGANVIEVVDRIKALLPSITDNLPAGLDVTVLTDRTQTIRASVKDVQHELLIAIALVVMVTFLFLRRFSATIIPSIAVPLSLVGTF 329
            EN  + A  N   A  L I+   GAN ++    IKA L  +    P G+ V    D T  ++ S+ +V   L  AI LV +V +LFL+   AT+IP+IAVP+ L+GTF
Sbjct:  273 ENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTF 380          
BLAST of EY711314 vs. ExPASy Swiss-Prot
Match: SEPB_PSEP1 (Probable efflux pump membrane transporter sepB OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=sepB PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.984e-12
Identity = 39/109 (35.78%), Postives = 61/109 (55.96%), Query Frame = 3
Query:    3 AENERLAAWANENQAVLLNIQRQPGANVIEVVDRIKALLPSITDNLPAGLDVTVLTDRTQTIRASVKDVQHELLIAIALVVMVTFLFLRRFSATIIPSIAVPLSLVGTF 329
            +EN  ++A      +  L ++   G N++E V  +KA L      LP G++V    D +  + AS+  V H +L A+ LV +V FLFL+   ATIIP++AVP+ L+  F
Sbjct:  272 SENFAISAKYRGQDSAGLGLRLASGGNLLETVKAVKAELEKQKAYLPEGVEVIYPYDTSPVVEASIDSVVHTILEAVVLVFLVMFLFLQSLRATIIPTLAVPVVLLAAF 380          
The following BLAST results are available for this feature:
BLAST of EY711314 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 130
Match NameE-valueIdentityDescription
MDTC_SALAR9.461e-2245.37Multidrug resistance protein mdtC OS=Salmonella ar... [more]
MDTC_ERWT91.614e-2145.37Multidrug resistance protein mdtC OS=Erwinia tasma... [more]
BEPE_BRUSU2.041e-1641.41Efflux pump membrane transporter bepE OS=Brucella ... [more]
BEPG_BRUSU1.463e-1436.36Efflux pump membrane transporter bepG OS=Brucella ... [more]
TTGH_PSEPU9.483e-1434.86Toluene efflux pump membrane transporter ttgH OS=P... [more]
SRPB_PSEPU9.483e-1434.86Solvent-resistant pump membrane transporter srpB O... [more]
ACRD_ECOLI6.146e-1340.40Probable aminoglycoside efflux pump OS=Escherichia... [more]
ACRB_ECOLI8.027e-1338.89Acriflavine resistance protein B OS=Escherichia co... [more]
ACRF_ECOLI1.369e-1238.89Acriflavine resistance protein F OS=Escherichia co... [more]
SEPB_PSEP13.984e-1235.78Probable efflux pump membrane transporter sepB OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-006-C09-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711314 ID=EY711314; Name=EY711314; organism=Citrus sinensis; type=EST; length=333bp
GCGCCGAGAACGAACGCCTTGCGGCCTGGGCCAATGAAAACCAGGCGGTC
TTGCTGAACATTCAGCGCCAGCCCGGGGCCAACGTCATCGAAGTGGTGGA
CCGGATCAAGGCATTGTTGCCGAGCATCACCGACAACCTGCCGGCCGGCC
TGGACGTGACGGTGCTCACTGACCGGACCCAGACCATCCGGGCCTCGGTC
AAGGACGTACAACATGAATTGCTGATCGCCATTGCCCTGGTGGTGATGGT
GACGTTCCTGTTCCTGCGCCGCTTCAGCGCGACCATCATCCCGTCCATTG
CCGTGCCACTGTCCCTGGTGGGCACCTTTGGCG
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