EY711314

Overview
NameEY711314
Unique NameEY711314
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length333
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711314 vs. ExPASy Swiss-Prot
Match: MEXB_PSEAE (Multidrug resistance protein mexB OS=Pseudomonas aeruginosa GN=mexB PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 6.796e-12
Identity = 38/100 (38.00%), Postives = 59/100 (59.00%), Query Frame = 3
Query:   33 NENQAVLLNIQRQPGANVIEVVDRIKALLPSITDNLPAGLDVTVLTDRTQTIRASVKDVQHELLIAIALVVMVTFLFLRRFSATIIPSIAVPLSLVGTFG 332
            N + A  + I+   GAN ++    I+  + ++   +P G+ V    D T  + AS+ +V   L  AI LV +V +LFL+ F AT+IP+IAVP+ L+GTFG
Sbjct:  282 NGSPASGIAIKLATGANALDTAKAIRQTIANLEPFMPQGMKVVYPYDTTPVVSASIHEVVKTLGEAILLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFG 381          
BLAST of EY711314 vs. ExPASy Swiss-Prot
Match: Y895_HAEIN (Uncharacterized transporter HI0895 OS=Haemophilus influenzae GN=HI0895 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.514e-11
Identity = 37/106 (34.91%), Postives = 62/106 (58.49%), Query Frame = 3
Query:    6 ENERLAAWANENQAVLLNIQRQPGANVIEVVDRIKALLPSITDNLPAGLDVTVLTDRTQTIRASVKDVQHELLIAIALVVMVTFLFLRRFSATIIPSIAVPLSLVG 323
            EN+   A AN  ++V+L I     AN + V ++I+ L  SI   LP  ++  +L DRT  I +S+ +V   +  A  +V++V  +F+  F A +IP +A+P+SL+G
Sbjct:  271 ENDNSRATANGAESVVLAINPTSTANPLTVAEKIRPLYESIKTQLPDSMESDILYDRTIAINSSIHEVIKTIGEATLIVLVVILMFIGSFRAILIPILAIPISLIG 376          
BLAST of EY711314 vs. ExPASy Swiss-Prot
Match: TTGE_PSEPU (Toluene efflux pump membrane transporter ttgE OS=Pseudomonas putida GN=ttgE PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.514e-11
Identity = 36/92 (39.13%), Postives = 54/92 (58.70%), Query Frame = 3
Query:   54 LNIQRQPGANVIEVVDRIKALLPSITDNLPAGLDVTVLTDRTQTIRASVKDVQHELLIAIALVVMVTFLFLRRFSATIIPSIAVPLSLVGTF 329
            L ++   G N++E V  +KA L      LP G++V    D +  + AS+  V H +L A+ LV +V FLFL+   ATIIP++AVP+ L+  F
Sbjct:  291 LGLRLASGGNLLETVKAVKAELEKQKAYLPEGVEVIYPYDTSPVVEASIDSVVHTILEAVVLVFLVMFLFLQSLRATIIPTLAVPVVLLAAF 382          
BLAST of EY711314 vs. ExPASy Swiss-Prot
Match: MDTF_ECOL6 (Multidrug resistance protein mdtF OS=Escherichia coli O6 GN=mdtF PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.977e-11
Identity = 41/109 (37.61%), Postives = 61/109 (55.96%), Query Frame = 3
Query:    3 AENERLAAWANENQAVLLNIQRQPGANVIEVVDRIKALLPSITDNLPAGLDVTVLTDRTQTIRASVKDVQHELLIAIALVVMVTFLFLRRFSATIIPSIAVPLSLVGTF 329
            AE+    A  N   A  + I+   GAN ++    +K  L  ++   PA L      D T  I+ S+++V   L+ AI LV +V +LFL+ F ATIIP+IAVP+ ++GTF
Sbjct:  272 AEDYSTVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYFPASLKTVYPYDTTPFIKISIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVILGTF 380          
BLAST of EY711314 vs. ExPASy Swiss-Prot
Match: TTGB_PSEPU (Toluene efflux pump membrane transporter ttgB OS=Pseudomonas putida GN=ttgB PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 3.373e-11
Identity = 36/109 (33.03%), Postives = 58/109 (53.21%), Query Frame = 3
Query:    6 ENERLAAWANENQAVLLNIQRQPGANVIEVVDRIKALLPSITDNLPAGLDVTVLTDRTQTIRASVKDVQHELLIAIALVVMVTFLFLRRFSATIIPSIAVPLSLVGTFG 332
            EN  ++A  N   A  L ++   GAN ++    ++  +  +    P G+      D T  +  S+  V H L+ A+ LV +V +LFL+ F ATII ++ VP+ L+GTFG
Sbjct:  273 ENYAVSAQFNGKPASGLAVKLATGANALDTAKALRETIKGLEPFFPPGVKAVFPYDTTPVVTESISGVIHTLIEAVVLVFLVMYLFLQNFRATIITTMTVPVVLLGTFG 381          
BLAST of EY711314 vs. ExPASy Swiss-Prot
Match: TTGB_PSEPK (Probable efflux pump membrane transporter ttgB OS=Pseudomonas putida (strain KT2440) GN=ttgB PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.373e-11
Identity = 36/109 (33.03%), Postives = 58/109 (53.21%), Query Frame = 3
Query:    6 ENERLAAWANENQAVLLNIQRQPGANVIEVVDRIKALLPSITDNLPAGLDVTVLTDRTQTIRASVKDVQHELLIAIALVVMVTFLFLRRFSATIIPSIAVPLSLVGTFG 332
            EN  ++A  N   A  L ++   GAN ++    ++  +  +    P G+      D T  +  S+  V H L+ A+ LV +V +LFL+ F ATII ++ VP+ L+GTFG
Sbjct:  273 ENYAVSAQFNGKPASGLAVKLATGANALDTAKALRETIKGLEPFFPPGVKAVFPYDTTPVVTESISGVIHTLIEAVVLVFLVMYLFLQNFRATIITTMTVPVVLLGTFG 381          
BLAST of EY711314 vs. ExPASy Swiss-Prot
Match: MEPB_PSEPU (Multidrug/solvent efflux pump membrane transporter mepB OS=Pseudomonas putida GN=mepB PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.373e-11
Identity = 36/109 (33.03%), Postives = 58/109 (53.21%), Query Frame = 3
Query:    6 ENERLAAWANENQAVLLNIQRQPGANVIEVVDRIKALLPSITDNLPAGLDVTVLTDRTQTIRASVKDVQHELLIAIALVVMVTFLFLRRFSATIIPSIAVPLSLVGTFG 332
            EN  ++A  N   A  L ++   GAN ++    ++  +  +    P G+      D T  +  S+  V H L+ A+ LV +V +LFL+ F ATII ++ VP+ L+GTFG
Sbjct:  273 ENYAVSAQFNGKPASGLAVKLATGANALDTAKALRETIKGLEPFFPPGVKAVFPYDTTPVVTESISGVIHTLIEAVVLVFLVMYLFLQNFRATIITTMTVPVVLLGTFG 381          
BLAST of EY711314 vs. ExPASy Swiss-Prot
Match: MDTF_ECOLI (Multidrug resistance protein mdtF OS=Escherichia coli (strain K12) GN=mdtF PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.373e-11
Identity = 41/109 (37.61%), Postives = 60/109 (55.05%), Query Frame = 3
Query:    3 AENERLAAWANENQAVLLNIQRQPGANVIEVVDRIKALLPSITDNLPAGLDVTVLTDRTQTIRASVKDVQHELLIAIALVVMVTFLFLRRFSATIIPSIAVPLSLVGTF 329
            AE+    A  N   A  + I+   GAN ++    +K  L  ++   PA L      D T  I  S+++V   L+ AI LV +V +LFL+ F ATIIP+IAVP+ ++GTF
Sbjct:  272 AEDYSTVARYNGKPAAGIAIKLAAGANALDTSRAVKEELNRLSAYFPASLKTVYPYDTTPFIEISIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVILGTF 380          
BLAST of EY711314 vs. ExPASy Swiss-Prot
Match: MDTF_ECO57 (Multidrug resistance protein mdtF OS=Escherichia coli O157:H7 GN=mdtF PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 3.373e-11
Identity = 41/109 (37.61%), Postives = 60/109 (55.05%), Query Frame = 3
Query:    3 AENERLAAWANENQAVLLNIQRQPGANVIEVVDRIKALLPSITDNLPAGLDVTVLTDRTQTIRASVKDVQHELLIAIALVVMVTFLFLRRFSATIIPSIAVPLSLVGTF 329
            AE+    A  N   A  + I+   GAN ++    +K  L  ++   PA L      D T  I  S+++V   L+ AI LV +V +LFL+ F ATIIP+IAVP+ ++GTF
Sbjct:  272 AEDYSTVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYFPASLKTVYPYDTTPFIEISIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVILGTF 380          
BLAST of EY711314 vs. ExPASy Swiss-Prot
Match: ARPB_PSEPU (Antibiotic efflux pump membrane transporter arpB OS=Pseudomonas putida GN=arpB PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.373e-11
Identity = 36/109 (33.03%), Postives = 58/109 (53.21%), Query Frame = 3
Query:    6 ENERLAAWANENQAVLLNIQRQPGANVIEVVDRIKALLPSITDNLPAGLDVTVLTDRTQTIRASVKDVQHELLIAIALVVMVTFLFLRRFSATIIPSIAVPLSLVGTFG 332
            EN  ++A  N   A  L ++   GAN ++    ++  +  +    P G+      D T  +  S+  V H L+ A+ LV +V +LFL+ F ATII ++ VP+ L+GTFG
Sbjct:  273 ENYAVSAQFNGKPASGLAVKLATGANALDTAKALRETIKGLEPFFPPGVKAVFPYDTTPVVTESISGVIHTLIEAVVLVFLVMYLFLQNFRATIITTMTVPVVLLGTFG 381          
The following BLAST results are available for this feature:
BLAST of EY711314 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 130
Match NameE-valueIdentityDescription
MEXB_PSEAE6.796e-1238.00Multidrug resistance protein mexB OS=Pseudomonas a... [more]
Y895_HAEIN1.514e-1134.91Uncharacterized transporter HI0895 OS=Haemophilus ... [more]
TTGE_PSEPU1.514e-1139.13Toluene efflux pump membrane transporter ttgE OS=P... [more]
MDTF_ECOL61.977e-1137.61Multidrug resistance protein mdtF OS=Escherichia c... [more]
TTGB_PSEPU3.373e-1133.03Toluene efflux pump membrane transporter ttgB OS=P... [more]
TTGB_PSEPK3.373e-1133.03Probable efflux pump membrane transporter ttgB OS=... [more]
MEPB_PSEPU3.373e-1133.03Multidrug/solvent efflux pump membrane transporter... [more]
MDTF_ECOLI3.373e-1137.61Multidrug resistance protein mdtF OS=Escherichia c... [more]
MDTF_ECO573.373e-1137.61Multidrug resistance protein mdtF OS=Escherichia c... [more]
ARPB_PSEPU3.373e-1133.03Antibiotic efflux pump membrane transporter arpB O... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-006-C09-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711314 ID=EY711314; Name=EY711314; organism=Citrus sinensis; type=EST; length=333bp
GCGCCGAGAACGAACGCCTTGCGGCCTGGGCCAATGAAAACCAGGCGGTC
TTGCTGAACATTCAGCGCCAGCCCGGGGCCAACGTCATCGAAGTGGTGGA
CCGGATCAAGGCATTGTTGCCGAGCATCACCGACAACCTGCCGGCCGGCC
TGGACGTGACGGTGCTCACTGACCGGACCCAGACCATCCGGGCCTCGGTC
AAGGACGTACAACATGAATTGCTGATCGCCATTGCCCTGGTGGTGATGGT
GACGTTCCTGTTCCTGCGCCGCTTCAGCGCGACCATCATCCCGTCCATTG
CCGTGCCACTGTCCCTGGTGGGCACCTTTGGCG
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