EY711274

Overview
NameEY711274
Unique NameEY711274
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length932
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711274 vs. ExPASy Swiss-Prot
Match: ARP4_EMENI (Actin-related protein 4 OS=Emericella nidulans GN=arp4 PE=3 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 9.573e-13
Identity = 31/109 (28.44%), Postives = 53/109 (48.62%), Query Frame = 1
Query:  274 SSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGME----------AAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKAVAP 570
            S+  + +E PDG     G +R+R  E LF      ++          A  I E    ++   DVD+R  L  N+V++G S++  G  DR+++E+  L P   +++  AP
Sbjct:  319 STPGRPFEFPDGYNQVFGVDRYRVVESLFDAKATILDPDSQFPAPTPAQTIPELIKAALNGVDVDLRPHLLANVVVTGASSLLYGFTDRLNQELMQLYPGP-RVRISAP 426          

HSP 2 Score: 41.5874 bits (96), Expect = 9.573e-13
Identity = 19/26 (73.08%), Postives = 21/26 (80.77%), Query Frame = 2
Query:  605 IPASLSTFQQMWISKGEYDESGPSIV 682
            I ASL TF QMWISK E+DE GP+IV
Sbjct:  442 ILASLGTFHQMWISKKEFDEHGPNIV 467          

HSP 3 Score: 23.8682 bits (50), Expect = 9.573e-13
Identity = 9/13 (69.23%), Postives = 11/13 (84.62%), Query Frame = 3
Query:  573 ERKYSVWIGGSSL 611
            ER++S WIGGS L
Sbjct:  431 ERRFSSWIGGSIL 443          
BLAST of EY711274 vs. ExPASy Swiss-Prot
Match: ARP4_ASPFU (Actin-related protein 4 OS=Aspergillus fumigatus GN=arp4 PE=3 SV=1)

HSP 1 Score: 47.7506 bits (112), Expect = 9.579e-13
Identity = 33/105 (31.43%), Postives = 50/105 (47.62%), Query Frame = 1
Query:  256 ETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQ-----PSLIGMEAAGIHETTYNSIMKC-----DVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAP 540
            E AKSS    + +E PDG     G +R+R  E LF      P    +  A     T   ++K      DVD+R  L  N+V++G S++  G  DR+++E+    P
Sbjct:  309 EVAKSSPG--RPFEFPDGYNQVFGIDRYRVVESLFDAKAAIPDPESVFPAPTQAQTVPELIKAALNGVDVDVRPHLLANVVVTGASSLLYGFTDRLNQELMQSYP 411          

HSP 2 Score: 43.1282 bits (100), Expect = 9.579e-13
Identity = 20/26 (76.92%), Postives = 21/26 (80.77%), Query Frame = 2
Query:  605 IPASLSTFQQMWISKGEYDESGPSIV 682
            I ASL TF QMWISK EYDE GP+IV
Sbjct:  436 ILASLGTFHQMWISKKEYDEHGPNIV 461          

HSP 3 Score: 23.0978 bits (48), Expect = 9.579e-13
Identity = 8/13 (61.54%), Postives = 10/13 (76.92%), Query Frame = 3
Query:  573 ERKYSVWIGGSSL 611
            ERK+  W+GGS L
Sbjct:  425 ERKFGSWVGGSIL 437          
BLAST of EY711274 vs. ExPASy Swiss-Prot
Match: ARP6_CANGA (Actin-like protein ARP6 OS=Candida glabrata GN=ARP6 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.434e-12
Identity = 57/209 (27.27%), Postives = 89/209 (42.58%), Query Frame = 1
Query:   25 IVLHSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPD-------------------GQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKAVAPQRENTVFG 594
            +V+ SG   +  +PI +G     A+ +LD+ GR L   L + ++ R Y      E  +V ++KE+  YV  D     E  K+    + ++ LPD                    QI+T+  ERF  PE  F P +      GI ET   SI      +R  +  NIV  GG+   PG  DR+  E+    P+    +A     + ++ G
Sbjct:  175 LVIDSGFNCTWVIPIVKGVPYYKAVKKLDVGGRFLNGLLKETISFRHY--NVMDESILVNNIKEQCLYV--DPVSYFEAFKAKGKNKIDFVLPDFQTSFQGYVRDPKTALPDNAQILTLTDERFSVPEAFFHPEISQSLKPGIIETVLESIYMLPELLRPLMASNIVCMGGNFNLPGFTDRLVSELQRQLPTDWVCRAKISSGDKSLTG 379          
BLAST of EY711274 vs. ExPASy Swiss-Prot
Match: ARP5_CHICK (Actin-related protein 5 OS=Gallus gallus GN=ACTR5 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.091e-12
Identity = 40/142 (28.17%), Postives = 75/142 (52.82%), Query Frame = 1
Query:  184 AEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAP--SSMKIKAVAPQRENTVFGLED 603
            +  + + D++    +  L  E++ E  K  ++V+  + L +   + +G ER R PE++FQPSLIG +  GI ET    + +   + +  L  N+ L+GG+ M+PG+  R+ KE+  + P  SS ++   +    +  +G  D
Sbjct:  402 SSEQSLEDVESINEFEPLFAEEQPEAEKPVAAVQPVFNLAEYHQLFLGTERIRAPEIIFQPSLIGEDQTGIAETMQYVLERYSKEQQALLVQNVFLTGGNAMYPGLKARVQKELLEMRPFQSSFQVHLASSPTLDAWYGARD 543          

HSP 2 Score: 20.7866 bits (42), Expect = 3.091e-12
Identity = 8/26 (30.77%), Postives = 15/26 (57.69%), Query Frame = 2
Query:  593 DWRIIPASLSTFQQMWISKGEYDESG 670
            DW +      T ++ WI++ +Y+E G
Sbjct:  543 DWAV---EHMTREEGWITRKDYEEKG 565          
BLAST of EY711274 vs. ExPASy Swiss-Prot
Match: ARP6_KLULA (Actin-like protein ARP6 OS=Kluyveromyces lactis GN=ARP6 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.250e-12
Identity = 58/206 (28.16%), Postives = 87/206 (42.23%), Query Frame = 1
Query:   25 IVLHSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGA--------------------ERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKAVAPQREN 582
            +V+ SG   +  VPI +G     AI +LD+ GR LT  L + ++ R Y      E  +V ++KE+  +V  +        K ++ VE  Y LPD Q   +G                     E F  PE  F P +  +   GI ET    I  C   +R  L  NIV +GG+   P   +R+  E+    P     K  +PQ ++
Sbjct:  167 LVIDSGFNCTWAVPIIKGVPYYKAIKKLDIGGRFLTGLLQETISFRHY--NVMEETILVNNIKEQCTFVPPESYFSSFHNKMNTKVE--YVLPDFQTSFLGYVKKPGKEKLTDDAQTLLLTDEVFSVPETFFHPEIAQILKPGIVETILECINMCPEVVRPLLVANIVCTGGNFNIPNFHERLQTELQRQCPIDWSCKVHSPQEKD 368          
BLAST of EY711274 vs. ExPASy Swiss-Prot
Match: ARP5_MOUSE (Actin-related protein 5 OS=Mus musculus GN=Actr5 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.208e-11
Identity = 38/112 (33.93%), Postives = 65/112 (58.04%), Query Frame = 1
Query:  274 SSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAP--SSMKIKAVAPQRENTVFGLED 603
            ++V+  + L     +++G ER R PE++FQPSLIG E AGI ET +  + +    I+  L  N+ L+GG+ M+PG+  R+ KE+  + P  SS +++  +    +  +G  D
Sbjct:  429 TTVQPVFNLAAYHQLSVGTERIRAPEIIFQPSLIGEEQAGIAETLHFVLDRYPKAIQDTLVQNVFLTGGNVMYPGMKARVEKELLEMRPFQSSFQVQLASNPVLDAWYGARD 540          
The following BLAST results are available for this feature:
BLAST of EY711274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 466
Match NameE-valueIdentityDescription
ARP4_EMENI9.573e-1328.44Actin-related protein 4 OS=Emericella nidulans GN=... [more]
ARP4_ASPFU9.579e-1331.43Actin-related protein 4 OS=Aspergillus fumigatus G... [more]
ARP6_CANGA2.434e-1227.27Actin-like protein ARP6 OS=Candida glabrata GN=ARP... [more]
ARP5_CHICK3.091e-1228.17Actin-related protein 5 OS=Gallus gallus GN=ACTR5 ... [more]
ARP6_KLULA9.250e-1228.16Actin-like protein ARP6 OS=Kluyveromyces lactis GN... [more]
ARP5_MOUSE1.208e-1133.93Actin-related protein 5 OS=Mus musculus GN=Actr5 P... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-005-H01-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711274 ID=EY711274; Name=EY711274; organism=Citrus sinensis; type=EST; length=932bp
TTGCTCGACCACGCGTCCGCTGGTATTGTGCTGCATTCTGGTGATGGTGT
GTCTCATACTGTACCAATCTATGAGGGATATGCCCTTCCTCATGCCATTC
TTCGTTTGGACTTGGCTGGTCGTGATCTCACTGATGCATTGATGAAGATT
CTTACTGAGAGAGGTTACATGTTTACCACCACAGCCGAACGGGAAATTGT
CCGTGACATGAAGGAGAAGCTTGCTTATGTTGCCCTAGACTATGAGCAAG
AACTTGAGACTGCCAAGAGCAGCTCATCTGTTGAGAAGAACTATGAGCTG
CCTGATGGCCAGATCATCACCATTGGAGCTGAAAGATTCCGTTGCCCAGA
AGTTCTGTTCCAGCCATCTCTCATCGGAATGGAAGCTGCTGGTATTCATG
AGACTACCTACAACTCCATCATGAAGTGTGATGTGGATATTAGAAAGGAT
CTGTATGGTAACATTGTTCTCAGTGGGGGTTCAACTATGTTCCCTGGTAT
TGCCGACCGTATGAGCAAGGAAATCACAGCACTTGCTCCAAGCAGCATGA
AAATCAAGGCCGTGGCTCCCCAGAGAGAAAATACAGTGTTTGGATTGGAG
GATCATCCCTGCATCCCTCAGCACCTTCCAGCAGATGTGGATCTCAAAGG
GCGAATATGATGAGTCCGGCCCATCCATTGTCACAGGAAAGGCTCCTAAG
TCCTTAAGTGCCTGAGGGGGGAGTCTTTTTTTTCCTTTAGATGGTTTTTG
GGCCCGGTTCCCAAACCAAATTGGTGACATGAAAAAGGCTAAGGATGGGG
CCTGTAAGGAGCATCTCCCGTATTGATGTTTTTACAACCTTCTTACAGGT
TGAAGGGGGTTTTTCTGGATCACCAACTCCTGGCCTGAATATAAGGGGGT
AACCAAACTTTTTCCTCTTTTCCCTTTTTAAT
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