EY686996

Overview
NameEY686996
Unique NameEY686996
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length544
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY686996 vs. ExPASy Swiss-Prot
Match: SDCS_STAS1 (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=sdcS PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.423e-15
Identity = 39/105 (37.14%), Postives = 61/105 (58.10%), Query Frame = 2
Query:   20 IVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLATGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAALAFLMPTLGAYVFGTD 334
            ++ +    +TE TSN AT T++LP+L  ++  ++VHPLLLMVP A+ A  +++L  GTP N + F TG I I+ M   G  + +  I  +  ++  L   V G D
Sbjct:  407 VITIFVLFLTEITSNTATATMILPILATLSVAVNVHPLLLMVPAAMAANCAYMLPVGTPPNAIVFGTGKISIKKMASVGFWVNLLSIVVIVLVVYFLVPPVLGID 511          
BLAST of EY686996 vs. ExPASy Swiss-Prot
Match: S13A1_HUMAN (Solute carrier family 13 member 1 OS=Homo sapiens GN=SLC13A1 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.423e-15
Identity = 39/111 (35.14%), Postives = 67/111 (60.36%), Query Frame = 2
Query:   20 IVCLISAI----ITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLATGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAAL-----AFLMPTLGAYVF 325
            ++ LIS++    +TE  SN AT TL LP+L  +A+ +HV+PL +++P  +   F+FLL    P N + F+ GH+++ DM+K GL + I G+A +      +++P    Y +
Sbjct:  472 LIILISSLMVTSLTEVASNPATITLFLPILSPLAEAIHVNPLYILIPSTLCTSFAFLLPVANPPNAIVFSYGHLKVIDMVKAGLGVNIVGVAVVMLGICTWIVPMFDLYTY 582          
BLAST of EY686996 vs. ExPASy Swiss-Prot
Match: S13A2_MOUSE (Solute carrier family 13 member 2 OS=Mus musculus GN=Slc13a2 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.776e-15
Identity = 41/111 (36.94%), Postives = 64/111 (57.66%), Query Frame = 2
Query:    2 PRPTRPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLATGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAALAFLMPTLGAYVFGTD 334
            P  T  I+ L+ AI TE TSN ATTTL LP+L  +A+ + +HPL +M+P  + A  +F+L   TP N + F+ G +++ DM + G  L I G+  +   + +    +F  D
Sbjct:  451 PSATVLILSLLVAIFTECTSNVATTTLFLPILASMAQAICLHPLYVMLPCTLAASLAFMLPVATPPNAIVFSFGGLKVSDMARAGFLLNIIGVLTITLSINSWSIPIFKLD 561          
BLAST of EY686996 vs. ExPASy Swiss-Prot
Match: S13A1_RAT (Solute carrier family 13 member 1 OS=Rattus norvegicus GN=Slc13a1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.744e-14
Identity = 38/100 (38.00%), Postives = 63/100 (63.00%), Query Frame = 2
Query:   20 IVCLISAII----TEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLATGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAALAFLMPT 307
            ++ LIS++I    TE  SN AT T++ P+L  +A+ +HV+PL +++P  +   F+FLL    P N + F+ GH+++ DM+K GL + I G+A +   M T
Sbjct:  472 LIILISSLIVTSLTEVASNPATITILFPILSPLAEAIHVNPLHILLPSTLCTSFAFLLPVANPPNAIVFSYGHLKVIDMVKAGLGVNILGVAVVMLGMFT 571          
BLAST of EY686996 vs. ExPASy Swiss-Prot
Match: S13A1_MOUSE (Solute carrier family 13 member 1 OS=Mus musculus GN=Slc13a1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.341e-14
Identity = 38/103 (36.89%), Postives = 62/103 (60.19%), Query Frame = 2
Query:    8 PTRPIVCLISAIITEFT---SNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLATGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAALAFLMPT 307
            P R I+ + S I+T  T   SN AT T++ P+L  +A+ + V+PL +++P  +   F+FLL    P N + F+ GH+++ DM+K GL + I G+A +   M T
Sbjct:  468 PVRLIILISSLIVTSLTEVASNPATITILFPILSPLAEAIQVNPLQILLPSTLCTSFAFLLPVANPPNAIVFSYGHLKVIDMVKAGLGVNILGVAVVMLGMFT 570          
BLAST of EY686996 vs. ExPASy Swiss-Prot
Match: S13A2_HUMAN (Solute carrier family 13 member 2 OS=Homo sapiens GN=SLC13A2 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.089e-13
Identity = 37/102 (36.27%), Postives = 61/102 (59.80%), Query Frame = 2
Query:   20 IVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLATGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAALAFLMPTLGAYVF 325
            I+ L+ A  TE TSN ATTT+ LP+L  +A+ + +HPL +M+P  +    +F+L   TP N + F+ G +++ DM + G  L I G+  +A  + + G  +F
Sbjct:  462 ILSLLVATFTECTSNVATTTIFLPILASMAQAICLHPLYVMLPCTLATSLAFMLPVATPPNAIVFSFGDLKVLDMARAGFLLNIIGVLIIALAINSWGIPLF 563          
BLAST of EY686996 vs. ExPASy Swiss-Prot
Match: YKG6_CAEEL (Uncharacterized transporter B0285.6 OS=Caenorhabditis elegans GN=B0285.6 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 3.170e-13
Identity = 36/102 (35.29%), Postives = 62/102 (60.78%), Query Frame = 2
Query:   20 IVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLATGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAALAFLMPTLGAYVF 325
            I+ ++  ++TEF++N+AT ++ +P+  ++A+ +  HPL   +P AIG  FSF+L   TP+N + + T  I + DM+  G+ L I  IA  A  M T   ++F
Sbjct:  452 ILSIVVVVMTEFSTNSATASIFIPISFKMAEAVGAHPLYFSIPTAIGPSFSFMLPMATPANAIVYETKTIRMIDMVSCGVFLNIFCIAITAINMNTWAFWLF 553          
BLAST of EY686996 vs. ExPASy Swiss-Prot
Match: SDCS_STAAR (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain MRSA252) GN=sdcS PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.222e-13
Identity = 35/105 (33.33%), Postives = 58/105 (55.24%), Query Frame = 2
Query:   20 IVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLATGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAALAFLMPTLGAYVFGTD 334
            ++ +    +TE TSN AT T++LP+L  ++  + VHPLLLM P A+ A  +++L  GTP N + F +G I I+ M   G  + +     +  ++  +   V G D
Sbjct:  408 VITIFVLFLTEVTSNTATATMILPILATLSVAVGVHPLLLMAPAAMAANCAYMLPVGTPPNAIIFGSGKISIKQMASVGFWVNLISAIIIILVVYYIMPIVLGID 512          
BLAST of EY686996 vs. ExPASy Swiss-Prot
Match: SDCS_STAAW (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain MW2) GN=sdcS PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.204e-12
Identity = 35/105 (33.33%), Postives = 58/105 (55.24%), Query Frame = 2
Query:   20 IVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLATGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAALAFLMPTLGAYVFGTD 334
            ++ +    +TE TSN AT T++LP+L  ++  + VHPLLLM P A+ A  +++L  GTP N + F +G I I+ M   G  + +     +  ++  +   V G D
Sbjct:  408 VITIFVLFLTEVTSNTATATMILPILATLSVAVGVHPLLLMAPAAMAANCAYMLPVGTPPNAIIFGSGKISIKQMASVGFWVNLISAIIIILVVYYVMPIVLGID 512          
BLAST of EY686996 vs. ExPASy Swiss-Prot
Match: SDCS_STAAS (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain MSSA476) GN=sdcS PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.204e-12
Identity = 35/105 (33.33%), Postives = 58/105 (55.24%), Query Frame = 2
Query:   20 IVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLATGTPSNIVGFTTGHIEIQDMIKTGLPLKIAGIAALAFLMPTLGAYVFGTD 334
            ++ +    +TE TSN AT T++LP+L  ++  + VHPLLLM P A+ A  +++L  GTP N + F +G I I+ M   G  + +     +  ++  +   V G D
Sbjct:  408 VITIFVLFLTEVTSNTATATMILPILATLSVAVGVHPLLLMAPAAMAANCAYMLPVGTPPNAIIFGSGKISIKQMASVGFWVNLISAIIIILVVYYVMPIVLGID 512          
The following BLAST results are available for this feature:
BLAST of EY686996 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
SDCS_STAS14.423e-1537.14Sodium-dependent dicarboxylate transporter sdcS OS... [more]
S13A1_HUMAN4.423e-1535.14Solute carrier family 13 member 1 OS=Homo sapiens ... [more]
S13A2_MOUSE5.776e-1536.94Solute carrier family 13 member 2 OS=Mus musculus ... [more]
S13A1_RAT3.744e-1438.00Solute carrier family 13 member 1 OS=Rattus norveg... [more]
S13A1_MOUSE8.341e-1436.89Solute carrier family 13 member 1 OS=Mus musculus ... [more]
S13A2_HUMAN1.089e-1336.27Solute carrier family 13 member 2 OS=Homo sapiens ... [more]
YKG6_CAEEL3.170e-1335.29Uncharacterized transporter B0285.6 OS=Caenorhabdi... [more]
SDCS_STAAR9.222e-1333.33Sodium-dependent dicarboxylate transporter sdcS OS... [more]
SDCS_STAAW1.204e-1233.33Sodium-dependent dicarboxylate transporter sdcS OS... [more]
SDCS_STAAS1.204e-1233.33Sodium-dependent dicarboxylate transporter sdcS OS... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-031-G07-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY686996 ID=EY686996; Name=EY686996; organism=Citrus sinensis; type=EST; length=544bp
TCCTCGACCCACGCGTCCGATCGTATGTCTGATTAGCGCGATTATTACTG
AATTCACATCAAATAATGCCACAACAACTCTCGTTCTTCCACTTCTGATC
CAAATAGCAAAAACTATGCATGTTCATCCATTGCTTCTTATGGTTCCTGG
AGCAATTGGAGCACAATTTTCTTTCTTGTTAGCGACTGGAACCCCTTCAA
ATATTGTTGGATTCACAACCGGGCACATCGAAATTCAAGATATGATCAAG
ACAGGGCTGCCCCTTAAGATTGCTGGCATTGCTGCTCTGGCCTTTCTAAT
GCCTACGCTTGGTGCTTATGTTTTTGGGACAGATGGGGATGTTCAGTAGC
TGCAAACTCTTGTAAACTGTGGAGGTTTCTCTCAATCAAGTCTCCGTAAC
AGGCATTGGGGGACCCTGAATAGGAATTATAGCAATGCTAGTGTTTGATG
AGATGATGATAAAAATTGATGCTTTTCCTATAAGAAAAGACGCCTATTGT
ATATTTGCGTGCCTAATGAATGCTTCCCTTAGTGGTTAGCACNC
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