EY686994

Overview
NameEY686994
Unique NameEY686994
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length638
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY686994 vs. ExPASy Swiss-Prot
Match: RS2_HUMAN (40S ribosomal protein S2 OS=Homo sapiens GN=RPS2 PE=1 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 1.560e-42
Identity = 86/115 (74.78%), Postives = 101/115 (87.83%), Query Frame = 2
Query:  164 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSQEVATAIRGAIILAKLSVLYVERGSRGTR 508
            +W+PVTKLGRLV++ KI+SLE+IYL SLPIKE +IID  +G  LKDEV+KIMPVQKQTRAGQRTRFKAFV +GD +GHVGLGVKCS+EVATAIRGAIILAKLS++ V RG  G +
Sbjct:   59 EWMPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNK 173          
BLAST of EY686994 vs. ExPASy Swiss-Prot
Match: RS2_BOVIN (40S ribosomal protein S2 OS=Bos taurus GN=RPS2 PE=2 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 1.560e-42
Identity = 86/115 (74.78%), Postives = 101/115 (87.83%), Query Frame = 2
Query:  164 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSQEVATAIRGAIILAKLSVLYVERGSRGTR 508
            +W+PVTKLGRLV++ KI+SLE+IYL SLPIKE +IID  +G  LKDEV+KIMPVQKQTRAGQRTRFKAFV +GD +GHVGLGVKCS+EVATAIRGAIILAKLS++ V RG  G +
Sbjct:   59 EWLPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNK 173          
BLAST of EY686994 vs. ExPASy Swiss-Prot
Match: RS2_CRIGR (40S ribosomal protein S2 (Fragment) OS=Cricetulus griseus GN=RPS2 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.253e-41
Identity = 85/113 (75.22%), Postives = 99/113 (87.61%), Query Frame = 2
Query:  170 VPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSQEVATAIRGAIILAKLSVLYVERGSRGTR 508
            +PVTKLGRLV++ KI+SLE+IYL SLPIKE +IID  +G  LKDEV+KIMPVQKQTRAGQRTRFKAFV +GD +GHVGLGVKCS+EVATAIRGAIILAKLS++ V RG  G +
Sbjct:    1 IPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNK 113          
BLAST of EY686994 vs. ExPASy Swiss-Prot
Match: RS2_CAEEL (40S ribosomal protein S2 OS=Caenorhabditis elegans GN=rps-2 PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 6.135e-39
Identity = 82/115 (71.30%), Postives = 97/115 (84.35%), Query Frame = 2
Query:  164 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSQEVATAIRGAIILAKLSVLYVERGSRGTR 508
            +W PVTKLGRLV+E KI +LE+IYL+SLPIKE++IID L  + LKDEV+KI PVQKQT AGQRTRFKAFV +GD  GHVGLGVKCS+EVATAIRGAI+ AKL+V+ V RG  G +
Sbjct:   56 EWTPVTKLGRLVKEKKITTLEEIYLNSLPIKEFEIIDALCSN-LKDEVLKISPVQKQTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVATAIRGAIVAAKLAVVPVRRGYWGNK 169          
BLAST of EY686994 vs. ExPASy Swiss-Prot
Match: RS2_DICDI (40S ribosomal protein S2 OS=Dictyostelium discoideum GN=rps2 PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.367e-38
Identity = 82/114 (71.93%), Postives = 94/114 (82.46%), Query Frame = 2
Query:  167 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSQEVATAIRGAIILAKLSVLYVERGSRGTR 508
            W PVTKLGRLV  G + ++ +IYL SLPIKEYQIID  +   LKDEVMKI+PVQKQTRAGQRTRFKAFVVVGD +GHVGLGVKC++EVATAI GAI+ AKLSV+ V RG  G +
Sbjct:   49 WTPVTKLGRLVALGLVENIHEIYLFSLPIKEYQIIDKFLN--LKDEVMKIVPVQKQTRAGQRTRFKAFVVVGDHNGHVGLGVKCAKEVATAISGAIVAAKLSVIPVRRGYWGNK 160          
BLAST of EY686994 vs. ExPASy Swiss-Prot
Match: RS2_YEAST (40S ribosomal protein S2 OS=Saccharomyces cerevisiae GN=RPS2 PE=1 SV=3)

HSP 1 Score: 158.688 bits (400), Expect = 2.331e-38
Identity = 81/120 (67.50%), Postives = 99/120 (82.50%), Query Frame = 2
Query:  167 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSQEVATAIRGAIILAKLSVLYVERGSRGTRCREASS 526
            WVPVTKLGRLV+ GKI ++E+I+LHSLP+KE+QIIDTL+   L+DEVM I PVQKQTRAGQRTRFKA VVVGD++GHVGLG+K ++EVA AIR  II+AKLSV+ + RG  GT   +  S
Sbjct:   35 WVPVTKLGRLVKAGKITTIEEIFLHSLPVKEFQIIDTLLPG-LQDEVMNIKPVQKQTRAGQRTRFKAVVVVGDSNGHVGLGIKTAKEVAGAIRAGIIIAKLSVIPIRRGYWGTNLGQPHS 153          
BLAST of EY686994 vs. ExPASy Swiss-Prot
Match: RS2_LEIAM (40S ribosomal protein S2 OS=Leishmania amazonensis PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.324e-33
Identity = 72/119 (60.50%), Postives = 92/119 (77.31%), Query Frame = 2
Query:  164 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGH-KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSQEVATAIRGAIILAKLSVLYVERGSRGTRCRE 517
            +WVP TKLGRLV+  K+ SLE+I+L S+PIKE+QI+DTLI   KL DE+MKI PVQK T AGQRTRFKAF VVGD DGH+G+G +  +EV+ AIR ++I AKL+++ V RG  G +  E
Sbjct:   44 EWVPCTKLGRLVKAQKVTSLEEIFLFSMPIKEHQIVDTLIAEGKLHDEMMKIYPVQKATSAGQRTRFKAFNVVGDCDGHIGIGARVGKEVSLAIRASMIAAKLNIVPVRRGYWGNKIGE 162          
BLAST of EY686994 vs. ExPASy Swiss-Prot
Match: RS5_THEAC (30S ribosomal protein S5P OS=Thermoplasma acidophilum GN=rps5p PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.983e-21
Identity = 52/116 (44.83%), Postives = 79/116 (68.10%), Query Frame = 2
Query:  164 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSQEVATAIRGAIILAKLSVLYVERGSRGTRC 511
            +WVP T+LG+LV  G+I+++ +     LP+KEY+I+D L+ + LKDEV+ I   Q+ T +G+R  +   VVVG+ DG+VGLG+  S+E A AIR A+I AKL+++ + RG     C
Sbjct:    4 EWVPKTQLGKLVASGQIKTMGEALRSKLPLKEYEIVDYLLPN-LKDEVIDIKRAQRMTDSGRRMTYSITVVVGNGDGYVGLGIGRSKEAAPAIRKALINAKLNIMEIRRGCGSWEC 118          
BLAST of EY686994 vs. ExPASy Swiss-Prot
Match: RS5_METBF (30S ribosomal protein S5P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps5p PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.983e-21
Identity = 53/116 (45.69%), Postives = 77/116 (66.38%), Query Frame = 2
Query:  164 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSQEVATAIRGAIILAKLSVLYVERGSRGTRC 511
            +W+P T+LG+LV EG++ S+E+     LPI+E QIID L+   L+DEV+ I  VQ+ T +G+R +F+A V+VG+ +G+VGLG     +V  AIR AI  AKL + Y+ RG     C
Sbjct:    6 EWIPKTRLGKLVMEGQVASMEEAIKSGLPIREPQIIDMLLPD-LEDEVLDINMVQRMTDSGRRVKFRATVIVGNRNGYVGLGQAKDVQVGPAIRKAIDAAKLDITYIHRGCGSWEC 120          
BLAST of EY686994 vs. ExPASy Swiss-Prot
Match: RS5_ARCFU (30S ribosomal protein S5P OS=Archaeoglobus fulgidus GN=rps5p PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.382e-21
Identity = 51/115 (44.35%), Postives = 81/115 (70.43%), Query Frame = 2
Query:  167 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSQEVATAIRGAIILAKLSVLYVERGSRGTRC 511
            WVP TKLGRLV +GKI+++++    +LP+KE +I+D L+   L+D+V++I  VQ+ T +G+RT+F+   VVG+ +G+VG+G   + +VA AI+ AI  AKL++  V+RG     C
Sbjct:    5 WVPKTKLGRLVADGKIKTMDEALASNLPLKEPEIVDILLPD-LEDDVLEISMVQRMTDSGRRTKFRVTAVVGNRNGYVGIGTGKASQVAPAIQKAINNAKLNIFKVQRGCGSWEC 118          
The following BLAST results are available for this feature:
BLAST of EY686994 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
RS2_HUMAN1.560e-4274.7840S ribosomal protein S2 OS=Homo sapiens GN=RPS2 P... [more]
RS2_BOVIN1.560e-4274.7840S ribosomal protein S2 OS=Bos taurus GN=RPS2 PE=... [more]
RS2_CRIGR2.253e-4175.2240S ribosomal protein S2 (Fragment) OS=Cricetulus ... [more]
RS2_CAEEL6.135e-3971.3040S ribosomal protein S2 OS=Caenorhabditis elegans... [more]
RS2_DICDI1.367e-3871.9340S ribosomal protein S2 OS=Dictyostelium discoide... [more]
RS2_YEAST2.331e-3867.5040S ribosomal protein S2 OS=Saccharomyces cerevisi... [more]
RS2_LEIAM1.324e-3360.5040S ribosomal protein S2 OS=Leishmania amazonensis... [more]
RS5_THEAC1.983e-2144.8330S ribosomal protein S5P OS=Thermoplasma acidophi... [more]
RS5_METBF1.983e-2145.6930S ribosomal protein S5P OS=Methanosarcina barker... [more]
RS5_ARCFU3.382e-2144.3530S ribosomal protein S5P OS=Archaeoglobus fulgidu... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-031-G05-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY686994 ID=EY686994; Name=EY686994; organism=Citrus sinensis; type=EST; length=638bp
CCACGCGTCCGCCTAGCTTCAACCCTAAACACACAAGAACAAAACCATGG
CTGAACGAGGTGGCGAGCGCGGTGCATTCGGACGCGGCTTCGGCCGTGGT
GGACGGGGCGACCGTGGAGGCCCACGTGGCCGTCGCCGCGCTGGACGCAG
AGAGGAAGAAGAGAAGTGGGTCCCAGTCACGAAACTCGGCCGTCTGGTGA
GAGAAGGCAAGATCAGGAGCCTCGAGCAAATCTACCTCCACTCGCTCCCA
ATCAAGGAGTATCAAATCATCGACACGCTTATCGGCCACAAATTGAAGGA
CGAGGTCATGAAGATCATGCCGGTGCAGAAACAGACACGTGCCGGTCAGA
GGACGAGGTTCAAGGCCTTCGTCGTCGTCGGTGACACGGACGGCCACGTG
GGTCTTGGCGTTAAGTGCTCCCAAGAGGTTGCCACTGCCATCCGTGGCGC
TATCATATTGGCGAAGCTGTCGGTGCTTTATGTTGAACGGGGGTCTCGGG
GTACAAGATGTCGAGAGGCGAGCTCGGTCGCGGGCGTCGTGTTTGGCGGG
GGCGCGAGGTGTGGGGTGCGGGTGGTGTTATTTTTTGTGCGCGGCAGGGA
CTGGCGCGCGTGCCAGGGTTGTGGTATGCGTGTCGGCC
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