EY686994

Overview
NameEY686994
Unique NameEY686994
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length638
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY686994_ssr369 microsatellite EY686994_ssr369:369..380. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY686994 vs. ExPASy Swiss-Prot
Match: RS5_METS3 (30S ribosomal protein S5P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps5p PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.797e-18
Identity = 46/116 (39.66%), Postives = 75/116 (64.66%), Query Frame = 2
Query:  164 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSQEVATAIRGAIILAKLSVLYVERGSRGTRC 511
            +W P TK+G+LV+EG I  +++I+   LPI E +I+D L+   L++EVM +  VQ+  ++G++  F+  V VG+ +G+VGLG   ++EV  AIR A+  AK +++ V RG     C
Sbjct:    7 EWEPKTKMGKLVKEGTITDIDEIFEKGLPIMELEIVDALVPD-LEEEVMDVNLVQRMHKSGRKVNFRVIVAVGNKNGYVGLGQGKAKEVGPAIRKAVDNAKYNLIKVRRGCGDWGC 121          
BLAST of EY686994 vs. ExPASy Swiss-Prot
Match: RS5_METST (30S ribosomal protein S5P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps5p PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.018e-17
Identity = 48/115 (41.74%), Postives = 73/115 (63.48%), Query Frame = 2
Query:  167 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSQEVATAIRGAIILAKLSVLYVERGSRGTRC 511
            W P T+LGR V++G+I  ++QI    LPI E +I+D L+   L++EVM +  VQ+  ++G++  F+  V VG+ +G+VGLG   SQEV  AIR A+  AK +++ V RG     C
Sbjct:   22 WEPKTELGRKVKDGEITDIDQILDKGLPIMELEIVDALLPD-LEEEVMDVNLVQRMHKSGRKVNFRVIVAVGNRNGYVGLGQGKSQEVGPAIRKAVDAAKYNLIKVRRGCGDWGC 135          
BLAST of EY686994 vs. ExPASy Swiss-Prot
Match: RS5_METVS (30S ribosomal protein S5P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps5p PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.963e-17
Identity = 47/115 (40.87%), Postives = 75/115 (65.22%), Query Frame = 2
Query:  167 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSQEVATAIRGAIILAKLSVLYVERGSRGTRC 511
            W P T++GR+V+EG I  +  I    LP+ E +I+D L+   L+++V+ +  VQ+  ++G+R R++A VVVG+ +G+VG+G+  S+EV  AIR AI  AKLS++ V  G     C
Sbjct:   16 WEPKTQVGRMVKEGTISDISYIMDKGLPLLEPEIVDVLLPD-LEEQVLDVKLVQRMHKSGRRARYRATVVVGNKNGYVGVGMGKSKEVGPAIRKAIAQAKLSLIKVRVGCGSWEC 129          
BLAST of EY686994 vs. ExPASy Swiss-Prot
Match: RS5_METVA (30S ribosomal protein S5P OS=Methanococcus vannielii GN=rps5p PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.963e-17
Identity = 47/115 (40.87%), Postives = 75/115 (65.22%), Query Frame = 2
Query:  167 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSQEVATAIRGAIILAKLSVLYVERGSRGTRC 511
            W P T++GR+V+EG I  +  I    LP+ E +I+D L+   L+++V+ +  VQ+  ++G+R R++A VVVG+ +G+VG+G+  S+EV  AIR AI  AKLS++ V  G     C
Sbjct:   16 WEPKTQVGRMVKEGTISDISYIMDKGLPLLEPEIVDVLLPD-LEEQVLDVKLVQRMHKSGRRARYRATVVVGNKNGYVGVGMGKSKEVGPAIRKAIAQAKLSLIKVRVGCGSWEC 129          
BLAST of EY686994 vs. ExPASy Swiss-Prot
Match: RS5_METMP (30S ribosomal protein S5P OS=Methanococcus maripaludis GN=rps5p PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.963e-17
Identity = 47/115 (40.87%), Postives = 75/115 (65.22%), Query Frame = 2
Query:  167 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSQEVATAIRGAIILAKLSVLYVERGSRGTRC 511
            W P T++GR+V+EG I  +  I    LP+ E +I+D L+   L+++V+ +  VQ+  ++G+R R++A VVVG+ +G+VG+G+  S+EV  AIR AI  AKLS++ V  G     C
Sbjct:   16 WEPKTQIGRMVKEGTISDISYIMDKGLPLLEPEIVDALLPD-LEEQVLDVKLVQRMHKSGRRARYRATVVVGNKNGYVGVGMGKSKEVGPAIRKAIAHAKLSLIKVRVGCGSWEC 129          
BLAST of EY686994 vs. ExPASy Swiss-Prot
Match: RS5_METM7 (30S ribosomal protein S5P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps5p PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.963e-17
Identity = 47/115 (40.87%), Postives = 75/115 (65.22%), Query Frame = 2
Query:  167 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSQEVATAIRGAIILAKLSVLYVERGSRGTRC 511
            W P T++GR+V+EG I  +  I    LP+ E +I+D L+   L+++V+ +  VQ+  ++G+R R++A VVVG+ +G+VG+G+  S+EV  AIR AI  AKLS++ V  G     C
Sbjct:   20 WEPKTQIGRMVKEGTISDINYIMDKGLPLLEPEIVDALLPD-LEEQVLDVKLVQRMHKSGRRARYRATVVVGNKNGYVGVGMGKSKEVGPAIRKAIAHAKLSLIKVRIGCGSWEC 133          
BLAST of EY686994 vs. ExPASy Swiss-Prot
Match: RS5_METM6 (30S ribosomal protein S5P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps5p PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.963e-17
Identity = 47/115 (40.87%), Postives = 75/115 (65.22%), Query Frame = 2
Query:  167 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSQEVATAIRGAIILAKLSVLYVERGSRGTRC 511
            W P T++GR+V+EG I  +  I    LP+ E +I+D L+   L+++V+ +  VQ+  ++G+R R++A VVVG+ +G+VG+G+  S+EV  AIR AI  AKLS++ V  G     C
Sbjct:   20 WEPKTQIGRMVKEGTISDINYIMDKGLPLLEPEIVDALLPD-LEEQVLDVKLVQRMHKSGRRARYRATVVVGNKNGYVGVGMGKSKEVGPAIRKAIAHAKLSLIKVRVGCGSWEC 133          
BLAST of EY686994 vs. ExPASy Swiss-Prot
Match: RS5_METB6 (30S ribosomal protein S5P OS=Methanoregula boonei (strain 6A8) GN=rps5p PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.054e-17
Identity = 45/116 (38.79%), Postives = 74/116 (63.79%), Query Frame = 2
Query:  164 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSQEVATAIRGAIILAKLSVLYVERGSRGTRC 511
            +W PVT LG+ V  G+I+S++Q+     PIKE +I+D  +   L+DEV+ I  +Q+ T +G+R +F+A V+VG+ +G++G G     +V  AI+ AI  AK++++ V RG     C
Sbjct:    7 EWRPVTGLGKQVASGEIKSIDQVLESGRPIKEPEIVDMFLPD-LEDEVLDIAMMQRMTDSGRRVQFRAVVIVGNRNGYIGFGQGKDVQVGDAIKKAITKAKMNLVKVRRGCGSWEC 121          
BLAST of EY686994 vs. ExPASy Swiss-Prot
Match: RS5_METLZ (30S ribosomal protein S5P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps5p PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.600e-17
Identity = 48/115 (41.74%), Postives = 71/115 (61.74%), Query Frame = 2
Query:  167 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSQEVATAIRGAIILAKLSVLYVERGSRGTRC 511
            WVPVT LG+ V  G+  S ++I     PIKE  I+D ++   L DEV+ I  +Q+ T +G+R +F+A VV+G+ +G+VG G     +V TAI+ AI  AKL+++ V RG     C
Sbjct:    8 WVPVTGLGKKVMAGEFASFDEILASGQPIKEAGIVDAMLPD-LVDEVLCIDMMQRMTDSGRRIKFRAVVVIGNKNGYVGFGQGRDVQVGTAIKKAITNAKLNIVKVRRGCGSWEC 121          
BLAST of EY686994 vs. ExPASy Swiss-Prot
Match: RS5_METM5 (30S ribosomal protein S5P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps5p PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.620e-17
Identity = 46/115 (40.00%), Postives = 74/115 (64.35%), Query Frame = 2
Query:  167 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSQEVATAIRGAIILAKLSVLYVERGSRGTRC 511
            W P T++GR+V+EG I  +  I    LP+ E +I+D L+   L+++V+ +  VQ+  ++G+R R++A V VG+ +G+VG+G+  S+EV  AIR AI  AKLS++ V  G     C
Sbjct:   20 WEPKTQIGRMVKEGTISDISYIMDKGLPLLEPEIVDALLPD-LEEQVLDVKLVQRMHKSGRRARYRATVAVGNKNGYVGVGMGKSKEVGPAIRKAIAHAKLSLIKVRVGCGSWEC 133          
The following BLAST results are available for this feature:
BLAST of EY686994 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
RS5_METS37.797e-1839.6630S ribosomal protein S5P OS=Methanobrevibacter sm... [more]
RS5_METST1.018e-1741.7430S ribosomal protein S5P OS=Methanosphaera stadtm... [more]
RS5_METVS2.963e-1740.8730S ribosomal protein S5P OS=Methanococcus vanniel... [more]
RS5_METVA2.963e-1740.8730S ribosomal protein S5P OS=Methanococcus vanniel... [more]
RS5_METMP2.963e-1740.8730S ribosomal protein S5P OS=Methanococcus maripal... [more]
RS5_METM72.963e-1740.8730S ribosomal protein S5P OS=Methanococcus maripal... [more]
RS5_METM62.963e-1740.8730S ribosomal protein S5P OS=Methanococcus maripal... [more]
RS5_METB65.054e-1738.7930S ribosomal protein S5P OS=Methanoregula boonei ... [more]
RS5_METLZ6.600e-1741.7430S ribosomal protein S5P OS=Methanocorpusculum la... [more]
RS5_METM58.620e-1740.0030S ribosomal protein S5P OS=Methanococcus maripal... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-031-G05-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY686994 ID=EY686994; Name=EY686994; organism=Citrus sinensis; type=EST; length=638bp
CCACGCGTCCGCCTAGCTTCAACCCTAAACACACAAGAACAAAACCATGG
CTGAACGAGGTGGCGAGCGCGGTGCATTCGGACGCGGCTTCGGCCGTGGT
GGACGGGGCGACCGTGGAGGCCCACGTGGCCGTCGCCGCGCTGGACGCAG
AGAGGAAGAAGAGAAGTGGGTCCCAGTCACGAAACTCGGCCGTCTGGTGA
GAGAAGGCAAGATCAGGAGCCTCGAGCAAATCTACCTCCACTCGCTCCCA
ATCAAGGAGTATCAAATCATCGACACGCTTATCGGCCACAAATTGAAGGA
CGAGGTCATGAAGATCATGCCGGTGCAGAAACAGACACGTGCCGGTCAGA
GGACGAGGTTCAAGGCCTTCGTCGTCGTCGGTGACACGGACGGCCACGTG
GGTCTTGGCGTTAAGTGCTCCCAAGAGGTTGCCACTGCCATCCGTGGCGC
TATCATATTGGCGAAGCTGTCGGTGCTTTATGTTGAACGGGGGTCTCGGG
GTACAAGATGTCGAGAGGCGAGCTCGGTCGCGGGCGTCGTGTTTGGCGGG
GGCGCGAGGTGTGGGGTGCGGGTGGTGTTATTTTTTGTGCGCGGCAGGGA
CTGGCGCGCGTGCCAGGGTTGTGGTATGCGTGTCGGCC
back to top