EY686994

Overview
NameEY686994
Unique NameEY686994
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length638
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY686994_ssr369 microsatellite EY686994_ssr369:369..380. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY686994 vs. ExPASy Swiss-Prot
Match: RS5_HALWD (30S ribosomal protein S5P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps5p PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.620e-17
Identity = 44/110 (40.00%), Postives = 73/110 (66.36%), Query Frame = 2
Query:  167 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSQEVATAIRGAIILAKLSVLYVERGS 496
            W P T+LGR+V++G + S+EQ     LP+KE +++D L+   L DEV+ I  VQ+ T +G+R +F+  V +G+ +G +G       +V +AI+ AI +AKL+++ V+RGS
Sbjct:   11 WTPRTRLGRMVQDGDVTSMEQALNSGLPLKEPELVDQLLPG-LDDEVLDINMVQRMTDSGRRVKFRCVVAIGNRNGFLGYAEGRDDQVGSAIQKAIDVAKLNLISVDRGS 119          
BLAST of EY686994 vs. ExPASy Swiss-Prot
Match: RS5_META3 (30S ribosomal protein S5P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps5p PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.470e-16
Identity = 46/115 (40.00%), Postives = 74/115 (64.35%), Query Frame = 2
Query:  167 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSQEVATAIRGAIILAKLSVLYVERGSRGTRC 511
            W P T++G+ V+EG I  ++ I  + LP+ E +I+D L+   L+++V+ +  VQ+  ++G+R RF+A  VVG+ +G VG+G+  S+EV  AIR AI  AKLS++ V  G     C
Sbjct:   13 WEPKTQVGKKVKEGTITDIDYIIDNGLPLLEPEIVDALLPD-LEEQVLDVSLVQRMHKSGRRARFRATAVVGNRNGFVGVGMGKSKEVGPAIRKAIAHAKLSLIKVRTGCGSWEC 126          
BLAST of EY686994 vs. ExPASy Swiss-Prot
Match: RS5_HALMA (30S ribosomal protein S5P OS=Haloarcula marismortui GN=rps5p PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.276e-16
Identity = 45/115 (39.13%), Postives = 71/115 (61.74%), Query Frame = 2
Query:  167 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSQEVATAIRGAIILAKLSVLYVERGSRGTRC 511
            W P T+LG+ V EG+I S+++     LP+KE +++D L+   L+DEV+ I  VQ+ T +G+R +F+  V VG+ DG +G       +V  AI+ AI +AKL+++ V RG     C
Sbjct:    7 WEPRTRLGKQVVEGEIDSMQEALNSGLPLKESEVVDQLVPD-LEDEVLDINMVQRMTDSGRRVKFRCVVAVGNRDGLIGYAEGRDDQVGGAIQKAIDIAKLNIIDVSRGCGSWEC 120          
BLAST of EY686994 vs. ExPASy Swiss-Prot
Match: RS5_NANEQ (30S ribosomal protein S5P OS=Nanoarchaeum equitans GN=rps5p PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.278e-16
Identity = 49/129 (37.98%), Postives = 75/129 (58.14%), Query Frame = 2
Query:  164 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPV-------------QKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSQEVATAIRGAIILAKLSVLYVERGSRGTRC 511
            +W P TKLGRLV+EGKI ++++I  +   I+E +I+D L+ + L+ E MK   +             QK+T  G +TR++   +VGD DGHVG+G+  S ++  A   AI  AKL+++ V RG     C
Sbjct:    6 EWQPKTKLGRLVKEGKITNIDEILSNKYVIREPEIVDVLLPN-LEVEFMKWRIIRGKFRSKKPYRMAQKKTAEGNKTRYEVIAIVGDKDGHVGVGLGRSSDLLIAREKAINRAKLNIIKVARGCGSWEC 133          
BLAST of EY686994 vs. ExPASy Swiss-Prot
Match: RS5_NATPD (30S ribosomal protein S5P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps5p PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.587e-16
Identity = 45/110 (40.91%), Postives = 71/110 (64.55%), Query Frame = 2
Query:  167 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSQEVATAIRGAIILAKLSVLYVERGS 496
            W P T+LGR V +G+I S++      LP+KE +++D L+   L+DEV+ I  VQ+ T +G+R +F+  VV+G+ DG+VG       +V  AI+ AI +AKL+++ V  GS
Sbjct:    5 WEPRTRLGRKVADGEITSMQDALQSGLPLKEPELVDQLLPG-LEDEVLDINMVQRMTDSGRRVKFRCVVVIGNRDGYVGYAQGRDDQVGGAIQKAIDVAKLNIIDVPLGS 113          
BLAST of EY686994 vs. ExPASy Swiss-Prot
Match: RS5_HALSA (30S ribosomal protein S5P OS=Halobacterium salinarium GN=rps5p PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.297e-16
Identity = 44/115 (38.26%), Postives = 70/115 (60.87%), Query Frame = 2
Query:  167 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSQEVATAIRGAIILAKLSVLYVERGSRGTRC 511
            W P T+LG LV++G++  + +     LP+KE +I+D L+   L DEV+ I  VQ+ T +G+R +F+  V +G+ DG+VG       +V  AI+ AI +AKL+++ V RG     C
Sbjct:    7 WQPKTRLGGLVQDGEVEDMSEALDTGLPLKEPEIVDQLLPG-LDDEVLDINMVQRMTDSGRRVKFRCVVAIGNRDGYVGYAEGRDDQVGGAIQKAIEVAKLNIIDVSRGCGSWEC 120          
BLAST of EY686994 vs. ExPASy Swiss-Prot
Match: RS5_CENSY (30S ribosomal protein S5P OS=Cenarchaeum symbiosum GN=rps5p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.682e-12
Identity = 46/116 (39.66%), Postives = 66/116 (56.90%), Query Frame = 2
Query:  167 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSQEVATAIRGAIILAKLSVLYVERGSRGTRCR 514
            WVP T LG+ V  G+I SLE+I      I+E  II  L+   LK EV+ +  +QK T  GQ TRFKA V  G+ +G++G+G   ++++  AI  A   A L+V  ++ G     CR
Sbjct:   27 WVPKTALGKRVNAGEITSLEEIQEAGARIQESGIIKKLLPD-LKTEVVDVGIIQKMTSNGQSTRFKAIVAAGNENGYLGIGQGKAKQMRIAIEKANNQALLNVGPIKLGCGSWECR 141          
The following BLAST results are available for this feature:
BLAST of EY686994 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
RS5_HALWD8.620e-1740.0030S ribosomal protein S5P OS=Haloquadratum walsbyi... [more]
RS5_META31.470e-1640.0030S ribosomal protein S5P OS=Methanococcus aeolicu... [more]
RS5_HALMA3.276e-1639.1330S ribosomal protein S5P OS=Haloarcula marismortu... [more]
RS5_NANEQ4.278e-1637.9830S ribosomal protein S5P OS=Nanoarchaeum equitans... [more]
RS5_NATPD5.587e-1640.9130S ribosomal protein S5P OS=Natronomonas pharaoni... [more]
RS5_HALSA7.297e-1638.2630S ribosomal protein S5P OS=Halobacterium salinar... [more]
RS5_CENSY1.682e-1239.6630S ribosomal protein S5P OS=Cenarchaeum symbiosum... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-031-G05-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY686994 ID=EY686994; Name=EY686994; organism=Citrus sinensis; type=EST; length=638bp
CCACGCGTCCGCCTAGCTTCAACCCTAAACACACAAGAACAAAACCATGG
CTGAACGAGGTGGCGAGCGCGGTGCATTCGGACGCGGCTTCGGCCGTGGT
GGACGGGGCGACCGTGGAGGCCCACGTGGCCGTCGCCGCGCTGGACGCAG
AGAGGAAGAAGAGAAGTGGGTCCCAGTCACGAAACTCGGCCGTCTGGTGA
GAGAAGGCAAGATCAGGAGCCTCGAGCAAATCTACCTCCACTCGCTCCCA
ATCAAGGAGTATCAAATCATCGACACGCTTATCGGCCACAAATTGAAGGA
CGAGGTCATGAAGATCATGCCGGTGCAGAAACAGACACGTGCCGGTCAGA
GGACGAGGTTCAAGGCCTTCGTCGTCGTCGGTGACACGGACGGCCACGTG
GGTCTTGGCGTTAAGTGCTCCCAAGAGGTTGCCACTGCCATCCGTGGCGC
TATCATATTGGCGAAGCTGTCGGTGCTTTATGTTGAACGGGGGTCTCGGG
GTACAAGATGTCGAGAGGCGAGCTCGGTCGCGGGCGTCGTGTTTGGCGGG
GGCGCGAGGTGTGGGGTGCGGGTGGTGTTATTTTTTGTGCGCGGCAGGGA
CTGGCGCGCGTGCCAGGGTTGTGGTATGCGTGTCGGCC
back to top