EY711141

Overview
NameEY711141
Unique NameEY711141
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length852
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711141 vs. ExPASy Swiss-Prot
Match: DXS_CAMFF (1-deoxy-D-xylulose-5-phosphate synthase OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=dxs PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.255e-22
Identity = 69/211 (32.70%), Postives = 110/211 (52.13%), Query Frame = 3
Query:   48 FSQEQAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGVVLPPNNKGTPLEIGKGRILMEGD-RVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEH-EILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISAT 674
            F  ++AG+VG DG TH GAFD++F++ +PN+ ++AP DE    +++  +   D  P   R+PRGN    +L    K     + KG IL  GD  VA +GYG+ V + V  A   K  +   T+ D  F KPLD +L+ Q+A  H +  +  +    GG G  +  FL  + + +  + ++S    D +I HG  +   +   +S+  IS T
Sbjct:  398 FCMDRAGIVGEDGETHQGAFDISFLNAIPNLNLVAPRDEESFKNIMEFSYAFDS-PLAIRYPRGN---FILNNEYKSQKTALAKGEILENGDGSVAFIGYGNGVGKAVQTA---KKLNFKPTIVDLVFAKPLDKELLLQIAKTHNKWYVFSDSAKRGGIGEILAGFLQENLLTN--ILIKSFEYEDTFIKHGKTSVVEDYLSISAEKISNT 599          
BLAST of EY711141 vs. ExPASy Swiss-Prot
Match: DXS_MYCS2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Mycobacterium smegmatis GN=dxs PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.023e-22
Identity = 64/208 (30.77%), Postives = 112/208 (53.85%), Query Frame = 3
Query:   57 EQAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGVVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEE-GSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 677
            ++AG+ G DG +H G +D++ +  +P + V AP D A L   +  A  ++D P+  RFP+G+ +G  +P   +   +++           V ++  GS  +  +  A +L+SQ I VTV D R+  P+  + +  LA +H++++TVE+ G  GG GS V   L  + I    +  R + +P ++ DH S  + L E GL+ RHI+  +
Sbjct:  414 DRAGITGPDGASHNGMWDLSILGIIPGIRVAAPRDGARLRAELGEALAVNDGPTAIRFPKGD-VGEDIPAVQRRDGVDVLAVPATGLTHDVLLVAVGSFAKMALAVAELLRSQGIGVTVVDPRWVLPV-PEALADLARDHKLVVTVEDNGLHGGIGSSVSAALRHAEI---DVPCRDVGVPQQFQDHASRGEVLAEVGLTDRHIARQI 616          
BLAST of EY711141 vs. ExPASy Swiss-Prot
Match: DXS_FRASN (1-deoxy-D-xylulose-5-phosphate synthase OS=Frankia sp. (strain EAN1pec) GN=dxs PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.560e-22
Identity = 64/217 (29.49%), Postives = 111/217 (51.15%), Query Frame = 3
Query:   48 FSQEQAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGVVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEE-GSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLXR 695
            F  ++AG+ G DG +H G +D++F+  +P + + AP D A L   +  A    D P+  R+P+G         +  G    + +         V ++  G++   C+  A  + SQ I +TV D R+ KPLD  L+  LA +H++++TVE+ G VGG G+ V   L  +   D  + +R   +  R++DHG   D L E GL+ + ++  V+  + +
Sbjct:  413 FVLDRAGITGEDGASHNGMWDMSFLQVVPGLAIAAPRDAATLRAELDEAVSNTDGPTVVRYPKGKVAADSPAIDQVGGVDVLYRAPAAARHREVLLVSIGAMAPTCLDVAERVASQGIGITVVDPRWVKPLDPALV-DLARDHDLVVTVEDNGRVGGVGACVAQLLRDA---DVDVPVREFGVAQRFLDHGKRDDVLAEVGLAPQDLARKVIEAVAK 625          
BLAST of EY711141 vs. ExPASy Swiss-Prot
Match: DXS_CAMJD (1-deoxy-D-xylulose-5-phosphate synthase OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=dxs PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.560e-22
Identity = 64/196 (32.65%), Postives = 107/196 (54.59%), Query Frame = 3
Query:   48 FSQEQAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGVVLPPNNKGTPLEIGKGRILME-GDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEI-LITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPAD 629
            F+ ++AG+VG DG TH G FD++F++ LPN  ++AP DE ++MH +   A +   P  FR+PRG+    +L        ++ GK + L++    +A LGYG  V +       L+  + +  + D  F KPLD +L+ +LA + +I  I  E   +GG  S + +FL      D  +K+ S    D++I+HG  ++
Sbjct:  406 FAMDRAGIVGEDGETHQGVFDLSFLAPLPNFTLLAPRDE-QMMHNIMEYAYLHQGPIAFRYPRGS---FILDEEFNPCEIKFGKAQWLVKNSSEIAFLGYGQGVAKAWQVLRALQEMNNNANLIDLIFAKPLDEELLCELAKKSKIWFIFSENVKIGGIESLINNFLQK---YDLHVKVISFEYEDKFIEHGKTSE 594          
BLAST of EY711141 vs. ExPASy Swiss-Prot
Match: DXS_PSYA2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=dxs PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.568e-22
Identity = 75/229 (32.75%), Postives = 118/229 (51.53%), Query Frame = 3
Query:   48 FSQEQAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGVVLPPNNKGTPLEIGKG---RILMEGD---RVAILGYGSIVQQCVLAANM-----LKSQDISVTVADARFCKPLDTDLIRQLANEHEI-LITVEEGSV-GGFGSHVCHFL--TLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 689
            F+ ++AGLVG DG TH G FD  F+ C+PNM++ AP DE E  H++ T        +  R+PRG G G  +          IGK     +L E D   ++A+L +G++V     AA M     L +    + V + R+ KPLDT L+ QL  +    + T+EE ++ GG GS V  +L    +   +    + ++ +PDR++ HGS ++Q  + GL    +   +  LL
Sbjct:  454 FAIDRAGLVGEDGATHAGVFDFAFLRCVPNMMIAAPKDENECYHLLNTCYEYQG-CTAVRYPRGVGTGATI--TQPAQTYNIGKAVIESVLGEKDAPKKLALLAFGTMVATAQQAAEMIAKSPLLASSCQLHVVNMRWVKPLDTTLLEQLLLQGVTHIATLEEHTIMGGAGSAVNEYLLNDSAAFKNHRPAICNIGIPDRFVAHGSQSEQWADCGLDVEGVVNQLQQLL 679          
BLAST of EY711141 vs. ExPASy Swiss-Prot
Match: DXS_MYCA9 (1-deoxy-D-xylulose-5-phosphate synthase OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=dxs PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.568e-22
Identity = 64/212 (30.19%), Postives = 115/212 (54.25%), Query Frame = 3
Query:   48 FSQEQAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGVVLPPNNKGTPLEI-GKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 677
            F  ++AG+ G+DG +H G +D++ ++ +P M V AP D + L   +  A  +DD P+  RFP+G  +G  +P   +   ++I  +    +  D V ++  GS     +  A+ L  Q I VTV D R+  P+   ++ +LA +H +++T+E+  V GG GS V   +  +   D  +  R + +P ++++H S    LEE GL+ +HI+  +
Sbjct:  412 FVLDRAGITGSDGASHNGMWDLSILNVVPGMRVAAPRDASRLREELTEALAVDDGPTALRFPKGE-VGEDIPAIERRDGVDILARPASGLHAD-VLLVAVGSFASTALATADRLGKQGIGVTVVDPRWVLPVPPHVV-ELAGQHRLVVTLEDSGVHGGAGSAVTAAMQDA---DVDIPSRDIGVPQQFLEHASRGQVLEELGLTDQHIARKI 617          
BLAST of EY711141 vs. ExPASy Swiss-Prot
Match: DXS_CHLTR (1-deoxy-D-xylulose-5-phosphate synthase OS=Chlamydia trachomatis GN=dxs PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.568e-22
Identity = 70/220 (31.82%), Postives = 110/220 (50.00%), Query Frame = 3
Query:   48 FSQEQAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGVVLPPNNKGT-------PLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLS 683
            F+ ++AGL   DG +H G +D+ F+  +PNMV+  P + A ++  +  ++++   P   R+P        +P N K +       P+  G+  IL +GD + ++  G +    +     L    IS TV D  F KPLD  L++ L   H  +I +EE S+ GG GS    FL    I    L   S+ +PD +I HG+P   L   GL+S HI+  +LS
Sbjct:  416 FAIDRAGLAFHDGRSHHGIYDLGFLCSMPNMVICQPRN-ALVLERLFFSSLLWKSPCAIRYPN-------IPANEKASNSFFPFSPILPGEAEILCQGDDLLLIALGHMCNTALTVKEHLLDYGISTTVVDPIFIKPLDRKLLQSLLTHHSKVIILEEHSIHGGLGSEFLLFLNQHNIKADVL---SLGVPDMFIPHGNPETILNLIGLTSDHITQRILS 624          
BLAST of EY711141 vs. ExPASy Swiss-Prot
Match: DXS_CHLTB (1-deoxy-D-xylulose-5-phosphate synthase OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=dxs PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.568e-22
Identity = 70/220 (31.82%), Postives = 110/220 (50.00%), Query Frame = 3
Query:   48 FSQEQAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGVVLPPNNKGT-------PLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLS 683
            F+ ++AGL   DG +H G +D+ F+  +PNMV+  P + A ++  +  ++++   P   R+P        +P N K +       P+  G+  IL +GD + ++  G +    +     L    IS TV D  F KPLD  L++ L   H  +I +EE S+ GG GS    FL    I    L   S+ +PD +I HG+P   L   GL+S HI+  +LS
Sbjct:  416 FAIDRAGLAFHDGRSHHGIYDLGFLCSMPNMVICQPRN-ALVLERLFFSSLLWKSPCAIRYPN-------IPANEKASNSSFPFSPILPGEAEILCQGDDLLLIALGHMCNTALTVKEHLLDYGISTTVVDPIFIKPLDRKLLQSLLTHHSKVIILEEHSIHGGLGSEFLLFLNQHNIKADVL---SLGVPDMFIPHGNPETILNLIGLTSDHITQRILS 624          
BLAST of EY711141 vs. ExPASy Swiss-Prot
Match: DXS_CHLTA (1-deoxy-D-xylulose-5-phosphate synthase OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=dxs PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.568e-22
Identity = 70/220 (31.82%), Postives = 110/220 (50.00%), Query Frame = 3
Query:   48 FSQEQAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGVVLPPNNKGT-------PLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLS 683
            F+ ++AGL   DG +H G +D+ F+  +PNMV+  P + A ++  +  ++++   P   R+P        +P N K +       P+  G+  IL +GD + ++  G +    +     L    IS TV D  F KPLD  L++ L   H  +I +EE S+ GG GS    FL    I    L   S+ +PD +I HG+P   L   GL+S HI+  +LS
Sbjct:  416 FAIDRAGLAFHDGRSHHGIYDLGFLCSMPNMVICQPRN-ALVLERLFFSSLLWKSPCAIRYPN-------IPANEKASNSFFPFSPILPGEAEILCQGDDLLLIALGHMCNTALTVKEHLLDYGISTTVVDPIFIKPLDRKLLQSLLTHHSKVIILEEHSIHGGLGSEFLLFLNQHNIKADVL---SLGVPDMFIPHGNPETILNLIGLTSDHITQRILS 624          
BLAST of EY711141 vs. ExPASy Swiss-Prot
Match: DXS_CHLT2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=dxs PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.568e-22
Identity = 70/220 (31.82%), Postives = 110/220 (50.00%), Query Frame = 3
Query:   48 FSQEQAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGVVLPPNNKGT-------PLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLS 683
            F+ ++AGL   DG +H G +D+ F+  +PNMV+  P + A ++  +  ++++   P   R+P        +P N K +       P+  G+  IL +GD + ++  G +    +     L    IS TV D  F KPLD  L++ L   H  +I +EE S+ GG GS    FL    I    L   S+ +PD +I HG+P   L   GL+S HI+  +LS
Sbjct:  416 FAIDRAGLAFHDGRSHHGIYDLGFLCSMPNMVICQPRN-ALVLERLFFSSLLWKSPCAIRYPN-------IPANEKASNSSFPFSPILPGEAEILCQGDDLLLIALGHMCNTALTVKEHLLDYGISTTVVDPIFIKPLDRKLLQSLLTHHSKVIILEEHSIHGGLGSEFLLFLNQHNIKADVL---SLGVPDMFIPHGNPETILNLIGLTSDHITQRILS 624          
The following BLAST results are available for this feature:
BLAST of EY711141 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_CAMFF2.255e-2232.701-deoxy-D-xylulose-5-phosphate synthase OS=Campylo... [more]
DXS_MYCS25.023e-2230.771-deoxy-D-xylulose-5-phosphate synthase OS=Mycobac... [more]
DXS_FRASN6.560e-2229.491-deoxy-D-xylulose-5-phosphate synthase OS=Frankia... [more]
DXS_CAMJD6.560e-2232.651-deoxy-D-xylulose-5-phosphate synthase OS=Campylo... [more]
DXS_PSYA28.568e-2232.751-deoxy-D-xylulose-5-phosphate synthase OS=Psychro... [more]
DXS_MYCA98.568e-2230.191-deoxy-D-xylulose-5-phosphate synthase OS=Mycobac... [more]
DXS_CHLTR8.568e-2231.821-deoxy-D-xylulose-5-phosphate synthase OS=Chlamyd... [more]
DXS_CHLTB8.568e-2231.821-deoxy-D-xylulose-5-phosphate synthase OS=Chlamyd... [more]
DXS_CHLTA8.568e-2231.821-deoxy-D-xylulose-5-phosphate synthase OS=Chlamyd... [more]
DXS_CHLT28.568e-2231.821-deoxy-D-xylulose-5-phosphate synthase OS=Chlamyd... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-702-004-C07-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711141 ID=EY711141; Name=EY711141; organism=Citrus sinensis; type=EST; length=852bp
GATGGGAGCAGGTTGACATGATGTAGACCTTCAAAATTACCAGTCCGTTT
TCCCAAGAACAAGCTGGTTTGGTTGGTGCGGATGGACCTACTCACTGTGG
AGCATTTGACGTCACATTCATGTCTTGCTTGCCCAACATGGTGGTCATGG
CTCCATCTGATGAAGCTGAGCTAATGCACATGGTCGCTACCGCAGCAGTT
ATAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGCAACGGAATTGG
AGTTGTTCTCCCGCCTAATAACAAAGGAACTCCACTTGAGATTGGGAAAG
GAAGAATCCTAATGGAAGGCGATAGAGTGGCAATTTTGGGCTATGGTTCT
ATAGTCCAACAATGTGTGCTAGCTGCGAACATGCTTAAGAGCCAAGACAT
TTCCGTGACAGTGGCTGATGCAAGATTTTGCAAACCTTTGGATACAGACC
TCATTAGACAGTTGGCCAATGAGCATGAAATCCTAATTACTGTGGAAGAG
GGTTCTGTGGGAGGCTTTGGCTCTCATGTATGTCACTTTCTAACCTTAAG
TGGCATTCTGGATGGACCTCTCAAGTTGAGATCAATGGTGCTTCCTGATA
GATACATCGACCATGGATCACCAGCCGATCAGCTTGAAGAATCAGGGCTC
TCCTCNAGGCATATCTCTGCAACAGTCTTATCTCTCTTANGGAGGCCAAA
AGAGCCCTTCTGATTTAAGTATCATACAAATCAACAGCATCTTGCCCTTG
GATCAACTTACATTCCCAGTTGGGGGTGTAAACACTACAGGNCCAACTCT
AGAATCTTTACTTTCAATCCCCTGTAACATGAAGCATTACGTGGGATATA
AA
back to top