EY711141

Overview
NameEY711141
Unique NameEY711141
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length852
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711141 vs. ExPASy Swiss-Prot
Match: DXS_CLOBA (1-deoxy-D-xylulose-5-phosphate synthase OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=dxs PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.554e-21
Identity = 63/212 (29.72%), Postives = 109/212 (51.42%), Query Frame = 3
Query:   48 FSQEQAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGVVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVL 680
            F+ ++AG+VG DG TH G  DV+++S +PNM ++AP    E+  M+  A +  + P   R+PRG  I   L    +   +  GK  ++ EG ++ I+  G ++Q  +LA  +LK + I   + +A F KP+D  L+  L  +   ++T+E+  + GG G  +  +L     +D    ++ +   D +I  G+        GL    IS T+L
Sbjct:  411 FAIDRAGIVGDDGETHQGIMDVSYLSMMPNMTIVAPKCTEEIPSMLRWA-IKKNSPVAIRYPRGKDIVCNLDALQE---ISYGKWEVVSEGKKICIIASGRMLQHALLAKEILKEKGIDPKIVNATFIKPIDKCLLENLKEDGYDILTIEDNIICGGLGISILEYL---NYIDYNGNMKLLGYNDEFIPQGNVEILYRTYGLDPVSISNTIL 615          
BLAST of EY711141 vs. ExPASy Swiss-Prot
Match: DXS_NOCSJ (1-deoxy-D-xylulose-5-phosphate synthase OS=Nocardioides sp. (strain BAA-499 / JS614) GN=dxs PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.253e-21
Identity = 63/214 (29.44%), Postives = 113/214 (52.80%), Query Frame = 3
Query:   48 FSQEQAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGVVLPPNNKGTPLEIGKGRILMEGDR--VAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEE-GSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVL 680
            F  +++G+ G DG +H G +D++ +  +P + + AP D A L  ++  A  +DD P+  RFP+G+      PP +       G   IL+      V ++  G++    V  A  L +Q I VTV D R+ KP+D  ++ +LA EH +++++E+ G  GG G+ +   L  +G+   P +L    +P +++ H   A  LE  GL+ + I+  ++
Sbjct:  412 FVLDRSGVTGDDGASHNGMWDMSILQVVPGLRLAAPRDPARLRELLNEAVEVDDAPTVVRFPKGS------PPEDIEAVDRAGGADILVRNGTKDVLVVAVGAMGTTAVDVAQRLTAQGIGVTVVDPRWVKPVDPAIV-ELAREHRLVVSIEDNGETGGCGAVLLQTLNAAGV-HTPFRLHG--IPQQFLGHAKRAAILERIGLTPQAIALRIV 615          
BLAST of EY711141 vs. ExPASy Swiss-Prot
Match: DXS_CHLMU (1-deoxy-D-xylulose-5-phosphate synthase OS=Chlamydia muridarum GN=dxs PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.473e-21
Identity = 64/213 (30.05%), Postives = 111/213 (52.11%), Query Frame = 3
Query:   48 FSQEQAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGVVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLS 683
            F+ ++AGL   DG +H G +D+ F+  +PNMVV  P + A ++  +  ++++   P   R+P  +    V  P+   +P+  G+  +L +GD + ++  G +    +     L    IS TV D  F KPLDT+L++ L + H  ++ +EE S+ GG  +    FL    +    L   S+ +PD +I HG+P   L   GL+S  I+  +L+
Sbjct:  416 FAIDRAGLAFHDGRSHHGIYDLGFLCSMPNMVVCQPRN-ASVLERLLFSSLLWKSPCAIRYPNLSTRKEVSNPSF--SPIFPGEAEVLCQGDDLLLIALGHMCDTALAVKEQLLDHGISTTVVDPIFIKPLDTELLQTLLSHHSKVVVLEEHSIHGGLSAEFLLFLNNHNLKTDVL---SLGIPDIFIPHGNPETILNMIGLTSDQITLKILA 622          
BLAST of EY711141 vs. ExPASy Swiss-Prot
Match: DXS_RENSM (1-deoxy-D-xylulose-5-phosphate synthase OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589) GN=dxs PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.237e-20
Identity = 64/222 (28.83%), Postives = 116/222 (52.25%), Query Frame = 3
Query:   57 EQAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGV---VLPPNNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEG-SVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLXRPKEPF 710
            ++AG+ G DGP+H G +D++ +  +P + + AP D   L   +  A  I D P+  R+ +GN +G     +   + G  +   +     E D V ++  G++ +  +  AN+L +Q IS TV D R+  P+   +I +LA +H I+I +E+G   GG GS +   +  +G+      L  + LP  ++ HGS    L+  GL+++ ++  V++ +   K PF
Sbjct:  424 DRAGVTGPDGPSHHGMWDLSMLQIIPGLHLAAPRDATRLREELREAVAISDAPTVLRYSKGN-VGAEVEAIERLDDGVDILARRPAGSTEND-VLLVSVGAMSEMSLQVANLLGAQGISSTVVDPRWVLPVPQSII-ELAAQHRIVIVIEDGVRAGGVGSRIRQEMRAAGV---DTALNEVGLPVEFLAHGSRGQVLDRVGLTAQKVAHDVVAQVLGTKVPF 639          
BLAST of EY711141 vs. ExPASy Swiss-Prot
Match: DXS_CAMJE (1-deoxy-D-xylulose-5-phosphate synthase OS=Campylobacter jejuni GN=dxs PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.237e-20
Identity = 62/196 (31.63%), Postives = 107/196 (54.59%), Query Frame = 3
Query:   48 FSQEQAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGVVLPPNNKGTPLEIGKGRILMEGD-RVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEI-LITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPAD 629
            F+ ++AG+VG DG TH G FD++F++ LPN  ++AP DE ++M  +   A +   P   R+PRG+    +L        +++GK + L++ +  +A LGYG  V +       L+  + +  + D  F KPLD +L+ +LA + +I  I  E   +GG  S + +FL      D  +K+ S    D++I+HG  ++
Sbjct:  406 FAMDRAGIVGEDGETHQGVFDLSFLAPLPNFTLLAPRDE-QMMQNIMEYAYLHQGPIALRYPRGS---FILDKEFNPCEIKLGKAQWLVKNNSEIAFLGYGQGVAKAWQVLRALQEMNNNANLIDLIFAKPLDEELLCELAKKSKIWFIFSENVKIGGIESLINNFLQK---YDLHVKVVSFEYEDKFIEHGKTSE 594          
BLAST of EY711141 vs. ExPASy Swiss-Prot
Match: DXS_CLAMS (1-deoxy-D-xylulose-5-phosphate synthase OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=dxs PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.616e-20
Identity = 65/222 (29.28%), Postives = 116/222 (52.25%), Query Frame = 3
Query:   48 FSQEQAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGVVLPPNNKGTPLEIGKGRILMEGDR-VAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEG-SVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLXRPKEP 707
            F  ++AG+ G DGP+H G +D+  +  +P++ + AP D   L   +  A  +DD P+  RF +G+ +G  +    +   L+ G   +     + V I+  G +    +  A  L +Q I  TV D R+  P+   ++ +L   H +++T+E+G  VGG G+ +   L  +GI  G  +L    LPD ++DHG+ +  LE  GL+ +HI+  V++ +   + P
Sbjct:  415 FVLDRAGVTGPDGPSHHGMWDLALLQIVPHIRLSAPRDATRLREELGEAVKVDDAPTVVRFSKGS-VGDEIEAVRR---LDDGVDVLHESASKDVLIVTVGPMATMGIEVAERLAAQGIGATVVDPRWVVPVPRSVV-ELGGTHRLVVTIEDGVVVGGIGTRIRQDLREAGIDTGVTELG---LPDEFLDHGTRSQILERVGLTPQHIARDVVAQVLGSRVP 628          
BLAST of EY711141 vs. ExPASy Swiss-Prot
Match: DXS_CORGL (1-deoxy-D-xylulose-5-phosphate synthase OS=Corynebacterium glutamicum GN=dxs PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.701e-20
Identity = 70/223 (31.39%), Postives = 114/223 (51.12%), Query Frame = 3
Query:   57 EQAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGVVLP-PNNKGTPLEIGKGRILME----------GDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 689
            +++G+ G+DG +H G +D+   S +P + V AP DE  L  ++  A  IDD P+  RFP+G+     LP P      LE G   +  E             V I+  G      +  A+ +K   ++VTV D R+  P+   L+  L+++H+++IT+E+G + GG GS +   L  S + D P   R + +P +Y+DH S  + L + GL +  I  TV+  L
Sbjct:  417 DRSGVTGSDGASHNGVWDMALTSIVPGVQVAAPRDEDSLRELLNEAISIDDGPTVVRFPKGD-----LPTPIVAIDTLEDGVDVLAYEDATDVESTDDAPSVLIIAVGERATVALDVASRIKQHGVNVTVVDPRWIVPIPQSLV-ALSDDHDLVITIEDGVIHGGVGSLLSDALNASEV-DTP--RRQIAVPQKYLDHASRNEVLADYGLDADGIETTVVGWL 630          
BLAST of EY711141 vs. ExPASy Swiss-Prot
Match: DXS_CORGB (1-deoxy-D-xylulose-5-phosphate synthase OS=Corynebacterium glutamicum (strain R) GN=dxs PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.701e-20
Identity = 63/214 (29.44%), Postives = 113/214 (52.80%), Query Frame = 3
Query:   57 EQAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGVVLPPNNKGTPLEIGKGRILMEGD--RVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 689
            +++G+ G+DG +H G +D+   S +P + V AP DE  L  ++  A  IDD P+  RFP+G+    ++  +     +++       E D   V I+  G      +  A+ +    ++VTV D R+  P+   L+  L+++H+++IT+E+G + GG GS +   L  S + D P   R + +P +Y+DH S ++   + GL +  I  TV+  L
Sbjct:  417 DRSGVTGSDGASHNGVWDMALTSIVPGVQVAAPRDEDSLRELLNEAISIDDGPTVVRFPKGDLPTPIVAIDTLEDGVDVLAYEDATEDDAPSVLIVAVGERATVALEVASRITQHGVNVTVVDPRWIVPIPQSLV-ALSDDHDLVITIEDGVIHGGVGSLLSDALNASEV-DTP--RRQIAVPQKYLDHASRSEVFADYGLDADGIETTVVGWL 626          
BLAST of EY711141 vs. ExPASy Swiss-Prot
Match: DXS_ARTS2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Arthrobacter sp. (strain FB24) GN=dxs PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.701e-20
Identity = 71/237 (29.96%), Postives = 120/237 (50.63%), Query Frame = 3
Query:   57 EQAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGV---VLPPNNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEG-SVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLXRPKEPF*FKYHTNQQHLALGS 755
            ++AG+ G DG +H G +D+  +  +P + + AP D   L   +  A  I+D P+  R+ +GN +G     L   + G  +   +     E D V I+  G++ +  +  +N L +Q IS TV D R+  P+   +I  LA  H ++I +E+G   GG GS +   +  +G+      L  + LP  ++DHG+ A  LE  GL++R I+  V++ +   K PF  +    Q+H   GS
Sbjct:  424 DRAGVTGPDGASHHGMWDMAMVQIVPGLHLAAPRDATRLREELREAVAIEDAPTVVRYSKGN-VGAEVEALERLSDGVDVLARRPAGSSEND-VLIVSVGAMSELALDVSNRLGAQGISSTVVDPRWLLPVRKSII-ALAARHRLVICIEDGVRAGGVGSRIRQEMRAAGV---DTALNEVGLPVEFLDHGTRAQVLERVGLTARQITHDVVAQVLGTKVPF-ARPLPGQEHPTTGS 653          
BLAST of EY711141 vs. ExPASy Swiss-Prot
Match: DXS_RHOSR (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodococcus sp. (strain RHA1) GN=dxs PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.140e-20
Identity = 65/211 (30.81%), Postives = 110/211 (52.13%), Query Frame = 3
Query:   57 EQAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPR---GNGIGVVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEE-GSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 677
            ++AG+ G DG +H G +D++ +  +P M V AP D A L   +  A  +DD P+  RFP+   G+ +  V   +     L    GR     + V I+  G+     + AA  L+ Q IS TV D R+  P+   L++ LA ++ +++TVE+ G  GG GS V   L  +G+    +  R + +P +++DH S A    E GL+++ ++  +
Sbjct:  416 DRAGITGNDGASHNGMWDMSLLGIVPGMKVAAPRDTATLREELDEALAVDDGPTALRFPKGTVGDDVPAVSRLDGVVDILRAPSGR-----NDVLIVSVGAFAGLALAAAERLEQQGISATVVDPRWVLPVPESLVK-LAEDYTMVVTVEDSGLHGGVGSTVSAALRAAGV---DVPCRDLGVPQQFLDHASRAQIHAELGLTAQDVARQI 617          
The following BLAST results are available for this feature:
BLAST of EY711141 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_CLOBA5.554e-2129.721-deoxy-D-xylulose-5-phosphate synthase OS=Clostri... [more]
DXS_NOCSJ7.253e-2129.441-deoxy-D-xylulose-5-phosphate synthase OS=Nocardi... [more]
DXS_CHLMU9.473e-2130.051-deoxy-D-xylulose-5-phosphate synthase OS=Chlamyd... [more]
DXS_RENSM1.237e-2028.831-deoxy-D-xylulose-5-phosphate synthase OS=Renibac... [more]
DXS_CAMJE1.237e-2031.631-deoxy-D-xylulose-5-phosphate synthase OS=Campylo... [more]
DXS_CLAMS1.616e-2029.281-deoxy-D-xylulose-5-phosphate synthase OS=Claviba... [more]
DXS_CORGL4.701e-2031.391-deoxy-D-xylulose-5-phosphate synthase OS=Coryneb... [more]
DXS_CORGB4.701e-2029.441-deoxy-D-xylulose-5-phosphate synthase OS=Coryneb... [more]
DXS_ARTS24.701e-2029.961-deoxy-D-xylulose-5-phosphate synthase OS=Arthrob... [more]
DXS_RHOSR6.140e-2030.811-deoxy-D-xylulose-5-phosphate synthase OS=Rhodoco... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-004-C07-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711141 ID=EY711141; Name=EY711141; organism=Citrus sinensis; type=EST; length=852bp
GATGGGAGCAGGTTGACATGATGTAGACCTTCAAAATTACCAGTCCGTTT
TCCCAAGAACAAGCTGGTTTGGTTGGTGCGGATGGACCTACTCACTGTGG
AGCATTTGACGTCACATTCATGTCTTGCTTGCCCAACATGGTGGTCATGG
CTCCATCTGATGAAGCTGAGCTAATGCACATGGTCGCTACCGCAGCAGTT
ATAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGCAACGGAATTGG
AGTTGTTCTCCCGCCTAATAACAAAGGAACTCCACTTGAGATTGGGAAAG
GAAGAATCCTAATGGAAGGCGATAGAGTGGCAATTTTGGGCTATGGTTCT
ATAGTCCAACAATGTGTGCTAGCTGCGAACATGCTTAAGAGCCAAGACAT
TTCCGTGACAGTGGCTGATGCAAGATTTTGCAAACCTTTGGATACAGACC
TCATTAGACAGTTGGCCAATGAGCATGAAATCCTAATTACTGTGGAAGAG
GGTTCTGTGGGAGGCTTTGGCTCTCATGTATGTCACTTTCTAACCTTAAG
TGGCATTCTGGATGGACCTCTCAAGTTGAGATCAATGGTGCTTCCTGATA
GATACATCGACCATGGATCACCAGCCGATCAGCTTGAAGAATCAGGGCTC
TCCTCNAGGCATATCTCTGCAACAGTCTTATCTCTCTTANGGAGGCCAAA
AGAGCCCTTCTGATTTAAGTATCATACAAATCAACAGCATCTTGCCCTTG
GATCAACTTACATTCCCAGTTGGGGGTGTAAACACTACAGGNCCAACTCT
AGAATCTTTACTTTCAATCCCCTGTAACATGAAGCATTACGTGGGATATA
AA
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