EY686935

Overview
NameEY686935
Unique NameEY686935
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length826
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY686935 vs. ExPASy Swiss-Prot
Match: HGD_PSEE4 (Homogentisate 1,2-dioxygenase OS=Pseudomonas entomophila (strain L48) GN=hmgA PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.912e-43
Identity = 97/192 (50.52%), Postives = 123/192 (64.06%), Query Frame = 2
Query:  110 LNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFK--PRVPAHGKLVSEFDKSNSYTTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAGSLPD 679
            L Y SGFGN F+SEA+ GALP GQNSP   P+GLYAE +SGT+FT  R   +R+WLYRI+PSA H  F+   R P  G L           TP +LRW P  +P  PTDFI+G   +    +S    G +I++Y AN+SM+   F NADG+ L+VP++GRL IATE G LEV P EIAV+P+G +F   L D
Sbjct:    9 LQYLSGFGNEFASEALPGALPVGQNSPQKAPYGLYAELLSGTAFTMTRSELRRTWLYRIRPSALHPRFERLERQPLTGAL--------GAITPNRLRWSPQPMPAEPTDFIEGWLPMVANSASEKPAGVSIYIYRANRSMER-VFFNADGELLLVPEQGRLRIATELGVLEVEPLEIAVIPRGMKFRVELLD 191          
BLAST of EY686935 vs. ExPASy Swiss-Prot
Match: HGD_EMENI (Homogentisate 1,2-dioxygenase OS=Emericella nidulans GN=hmgA PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 8.472e-43
Identity = 89/190 (46.84%), Postives = 122/190 (64.21%), Query Frame = 2
Query:  116 YESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSYTTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAGSLPDGP 685
            Y++GF +   SEAI+GALP G NSP   P+GLYAE++SGT+FT+PR  N+++W+YRI P+A HE F     +    +S+  K      P QLRW P D+ D   D++ GL+ + G+G   ++ G  I +Y A K M   AF +ADGDFL+V Q G L I TE G+L V P EI V+P+G R+  +LPDGP
Sbjct:   14 YQNGFDSYHESEAIEGALPVGHNSPQKAPYGLYAEKLSGTAFTAPRHENKQTWVYRILPAAAHENFVEEDASSYHTLSDAKKLQH--IPNQLRWDPFDL-DETVDWVHGLHLVAGSGDPTVKQGLGILLYAAGKDMGKEAFYSADGDFLIVAQHGVLDIQTELGRLLVRPNEICVIPRGVRYRVTLPDGP 200          
BLAST of EY686935 vs. ExPASy Swiss-Prot
Match: HGD_NITHX (Homogentisate 1,2-dioxygenase OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=hmgA PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 7.172e-42
Identity = 88/191 (46.07%), Postives = 116/191 (60.73%), Query Frame = 2
Query:  116 YESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSYTTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAGSLPDGPS 688
            Y SGFGNSF +EA+ GALP G+NSP  C +GLYAEQ+SG+ FT+PR  N+RSWLYRI+PS  H     ++ A  KL              QLRW P  IP+    F+  + T+  AG +  + G A H+Y   +SM +  F NADG+ L VPQ G L   TE G ++  PGEIAV+P+G +F   +P GP+
Sbjct:   21 YMSGFGNSFETEALPGALPIGRNSPQRCAYGLYAEQLSGSPFTAPRGANERSWLYRIRPSVRHSGHFVKIDA--KLWRTAPCLEHDMPLAQLRWDPTPIPEDELTFVQSVRTMTTAGDAHTQTGMAAHIYLITRSMVDQHFYNADGEMLFVPQGGSLRFVTEFGVIDTEPGEIAVIPRGVKFRVEIPSGPA 209          
BLAST of EY686935 vs. ExPASy Swiss-Prot
Match: HGD_RHILO (Homogentisate 1,2-dioxygenase OS=Rhizobium loti GN=hmgA PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.223e-41
Identity = 90/195 (46.15%), Postives = 120/195 (61.54%), Query Frame = 2
Query:   95 EDFSDLNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSYTTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAGSLPD 679
            ED    +Y  GFGN F +E + G+LP+G+NSP    +GLYAEQ+SG+ FT+PR  N+RSWLYRI+PS  H   + +  ++    +  +  +      Q RW PV +P  PTDFI G+ +I  AG    + G A H+Y AN+SM +  F NADG+ LVVPQ G L   TE G +E+ PGEIAVLP+G  F   L D
Sbjct:   18 EDRMAFSYMPGFGNDFETETLPGSLPQGRNSPQRPAYGLYAEQLSGSPFTAPRGTNERSWLYRIRPSVKHTG-RFKAASYPLWKTAPNVGDHELALGQYRWNPVPMPKEPTDFIQGMRSITTAGDVLGQTGMAAHVYVANRSMVDDHFFNADGELLVVPQVGALRFVTEMGVIELRPGEIAVLPRGLVFKAELVD 211          
BLAST of EY686935 vs. ExPASy Swiss-Prot
Match: HGD_BRAJA (Homogentisate 1,2-dioxygenase OS=Bradyrhizobium japonicum GN=hmgA PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.559e-41
Identity = 85/192 (44.27%), Postives = 118/192 (61.46%), Query Frame = 2
Query:  116 YESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSYTTP-TQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAGSLPDGPS 688
            Y SGFGNSF +EA+ GALP G+NSP  C +GLYAEQ+SG+ FT+PR  N+RSWLYRI+PS  H     +  A    +      + Y  P  Q+RW P  +P     F+ G+ T+  AG    + G A H+Y   KSM +  F NADG+ + V Q+G L + TE G+++  PGEI V+P+G +F   +P+GP+
Sbjct:   21 YMSGFGNSFETEALPGALPIGRNSPQRCAYGLYAEQLSGSPFTAPRGTNERSWLYRIRPSVKHSGRFEKADAG---LWRSAPCHEYDLPIAQMRWDPTPVPKEEVTFVQGVQTMTTAGDVNTQAGMAAHVYLITKSMVDQHFYNADGELMFVLQQGNLRLVTEFGRIDAEPGEIVVIPRGVKFRVEIPNGPA 209          
BLAST of EY686935 vs. ExPASy Swiss-Prot
Match: HGD_RHOPB (Homogentisate 1,2-dioxygenase OS=Rhodopseudomonas palustris (strain BisB18) GN=hmgA PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.649e-41
Identity = 90/192 (46.88%), Postives = 119/192 (61.98%), Query Frame = 2
Query:  116 YESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSYTTP-TQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAGSLPDGPS 688
            Y SGFGNSF +EA+ GALP G+NSP   P+GLYAEQ+SG+ FT+PR  N+RSWLYRI+PS  H     +  A    +      + +  P  QLRW P  +P     F+ G+ T+  AG    + G A HMY  + SM N  F NADG+ + VPQ+G L + TE G + V+PGEIAV+P+G +F   L DGP+
Sbjct:   21 YMSGFGNSFETEALPGALPIGRNSPQRAPYGLYAEQLSGSPFTAPRGSNERSWLYRIRPSVQHSGRFEKAEAG---LWRSAPCHEHDMPIAQLRWDPPPLPQRAQTFLQGVETMTTAGDVNTQAGMAAHMYLISASMVNQHFYNADGELMFVPQQGGLRLVTEFGVIGVAPGEIAVIPRGVKFRVELIDGPA 209          
BLAST of EY686935 vs. ExPASy Swiss-Prot
Match: HGD_RHIME (Homogentisate 1,2-dioxygenase OS=Rhizobium meliloti GN=hmgA PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.551e-39
Identity = 81/183 (44.26%), Postives = 111/183 (60.66%), Query Frame = 2
Query:  116 YESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVP-AHGKLVSEFDKSNSYTTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRF 661
            Y  GFGN F +E++ GALP+GQNSP  C +GLYAEQ+SG+ FT+PR  N+RSWLYRI+PS  H     RV   H K      + +      QLRW P+  P    DF+ G+ T+  AG +  + G A H Y  N  M +  F NADG+ L+VP+ G + + TE G+++V P EI ++P+G  F
Sbjct:   21 YMPGFGNDFETESLPGALPQGQNSPQKCNYGLYAEQLSGSPFTAPRGTNERSWLYRIRPSVRHTGRFRRVDYPHWKTAPHVGEHS--LALGQLRWSPLPAPSEALDFLQGIRTMTTAGDALTQAGMAAHAYAFNADMVDDYFFNADGELLIVPETGAIQVFTELGRMDVEPSEICLIPRGMMF 201          
BLAST of EY686935 vs. ExPASy Swiss-Prot
Match: HGD_RHOPT (Homogentisate 1,2-dioxygenase OS=Rhodopseudomonas palustris (strain TIE-1) GN=hmgA PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.331e-39
Identity = 86/192 (44.79%), Postives = 115/192 (59.90%), Query Frame = 2
Query:  116 YESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHE-PFKPRVPAHGKLVSEFDKSNSYTTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAGSLPDGPS 688
            Y SGFGNSF +EA+ GALP G+NSP  C +GLYAEQ+SG+ FT+PR  N+RSWLYRI+PS  H   F        +    F+         QLRW P  +P     F+ G+ T+  AG    + G A H+Y   +SM +  F NADG+ + VPQ+G L + TE G + + P EIAV+P+G +F   L DGP+
Sbjct:   21 YMSGFGNSFETEALPGALPVGRNSPQRCAYGLYAEQLSGSPFTAPRGANERSWLYRIRPSVKHSGRFAKTDMGLWRSAPCFEHD---LPIAQLRWDPPPMPQEKLTFLQGVRTMTTAGDVNTQAGMATHLYLITQSMVDQHFYNADGEMMFVPQQGSLRLVTEFGIITIEPAEIAVIPRGIKFRVELVDGPA 209          
BLAST of EY686935 vs. ExPASy Swiss-Prot
Match: HGD_AGRRK (Homogentisate 1,2-dioxygenase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=hmgA PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.331e-39
Identity = 87/187 (46.52%), Postives = 116/187 (62.03%), Query Frame = 2
Query:  110 LNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATH-EPFKPRVPAHGKLVSEFDKSNSYTTPT-QLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSM-DNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRF 661
            L Y  GFGN F +E + GALP+GQNSP  C +GLYAEQ+SG+ FT+PR  N+RSWLYRI+PS  H   F      H K     D    ++ P  QLRW P+ +PD    F+DG+ T+  AG    + G A H+Y  N+ M D+ AF NADG+ L+VPQ G + + TE G ++V P EI ++P+G  F
Sbjct:   19 LQYMPGFGNDFETETLPGALPQGQNSPQKCNYGLYAEQLSGSPFTAPRGTNERSWLYRIRPSVRHTRRFSNASYPHWKSAPCLD---DHSLPLGQLRWGPMPVPDEKLSFLDGVRTMTTAGDVLTQTGMAAHVYVFNEDMVDDYAF-NADGELLIVPQVGAIRVFTEMGIMDVEPLEIVLIPRGMMF 201          
BLAST of EY686935 vs. ExPASy Swiss-Prot
Match: HGD_RHOPA (Homogentisate 1,2-dioxygenase OS=Rhodopseudomonas palustris GN=hmgA PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.351e-39
Identity = 86/192 (44.79%), Postives = 115/192 (59.90%), Query Frame = 2
Query:  116 YESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHE-PFKPRVPAHGKLVSEFDKSNSYTTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAGSLPDGPS 688
            Y SGFGNSF +EA+ GALP G+NSP  C +GLYAEQ+SG+ FT+PR  N+RSWLYRI+PS  H   F        +    F+         QLRW P  +P     F+ G+ T+  AG    + G A H+Y   +SM +  F NADG+ + VPQ+G L + TE G + + P EIAV+P+G +F   L DGP+
Sbjct:   21 YMSGFGNSFETEALPGALPVGRNSPQRCAYGLYAEQLSGSPFTAPRGANERSWLYRIRPSVKHSGRFAKTDMGLWRSAPCFEHD---LPIAQLRWDPPPMPQEALTFLQGVRTMTTAGDVNTQAGMATHLYLITQSMVDQHFYNADGEMMFVPQQGSLRLVTEFGIITIEPAEIAVIPRGVKFRVELVDGPA 209          
The following BLAST results are available for this feature:
BLAST of EY686935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
HGD_PSEE42.912e-4350.52Homogentisate 1,2-dioxygenase OS=Pseudomonas entom... [more]
HGD_EMENI8.472e-4346.84Homogentisate 1,2-dioxygenase OS=Emericella nidula... [more]
HGD_NITHX7.172e-4246.07Homogentisate 1,2-dioxygenase OS=Nitrobacter hambu... [more]
HGD_RHILO1.223e-4146.15Homogentisate 1,2-dioxygenase OS=Rhizobium loti GN... [more]
HGD_BRAJA3.559e-4144.27Homogentisate 1,2-dioxygenase OS=Bradyrhizobium ja... [more]
HGD_RHOPB4.649e-4146.88Homogentisate 1,2-dioxygenase OS=Rhodopseudomonas ... [more]
HGD_RHIME2.551e-3944.26Homogentisate 1,2-dioxygenase OS=Rhizobium melilot... [more]
HGD_RHOPT3.331e-3944.79Homogentisate 1,2-dioxygenase OS=Rhodopseudomonas ... [more]
HGD_AGRRK3.331e-3946.52Homogentisate 1,2-dioxygenase OS=Agrobacterium rad... [more]
HGD_RHOPA4.351e-3944.79Homogentisate 1,2-dioxygenase OS=Rhodopseudomonas ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-030-H10-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY686935 ID=EY686935; Name=EY686935; organism=Citrus sinensis; type=EST; length=826bp
CCACCCGTCCGAGGATTGTTAGTGAGCTGCTGAGACACAAATGGAGAAGA
AGAGTCAACATCAATCATCATCATTAATCAGAAAAACGGACGGCGAAGAT
TTCTCTGATCTGAATTACGAGTCAGGATTCGGCAACAGCTTCTCGTCGGA
GGCGATCGACGGTGCGTTGCCACGTGGACAGAACAGCCCCCTCGTTTGTC
CGTTCGGTCTCTACGCCGAACAGATCTCCGGCACCTCCTTCACCTCCCCT
CGCAAGCTCAATCAACGCAGTTGGTTATACAGAATAAAACCTTCTGCAAC
ACATGAACCGTTTAAGCCTCGAGTGCCTGCTCATGGGAAGCTGGTGAGTG
AATTTGACAAGTCTAACAGTTACACTACGCCGACTCAGCTCCGGTGGAAG
CCGGTTGATATCCCTGATTCACCGACTGATTTTATTGACGGGTTGTACAC
GATATGTGGGGCTGGCAGCTCATTTCTTCGGCATGGATATGCTATTCACA
TGTACACTGCCAACAAATCAATGGACAACTGTGCCTTCTGTAATGCTGAT
GGAGATTTTTTGGTAGTTCCCCAAAAAGGAAGGCTGTGGATTGCTACTGA
ATGTGGAAAACTGGAAGTCTCTCCTGGCGAAATTGCCGTTTTACCTCAAG
GGTTTCGTTTTGCTGGAAGTTTACCAGATGGGCCATCCCCGTGGTTACAT
CGCCGAGAGTTTTGGGGCCCATGTTCCGGCTTCCTGATGTTGGCCCGCGA
CGGGGCGATGGTCGGGGTGGGCCGAAAGAGTGCCTGGGGCCGACGGGCGG
GCCCGTGAGAGGGCCCCCGGCTAGAG
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