EY711118

Overview
NameEY711118
Unique NameEY711118
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711118 vs. ExPASy Swiss-Prot
Match: PRP22_YEAST (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22 OS=Saccharomyces cerevisiae GN=PRP22 PE=1 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 5.292e-62
Identity = 124/251 (49.40%), Postives = 171/251 (68.13%), Query Frame = 1
Query:   46 RKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFVRPREAQKAADEAKSQVWSH*WGIPLHS*MYTMLYKQTWRIHLGVNDNFVNHRALKSAGNGKHSL 798
            RK+V +TNIAETS+TIDGI YV+DPGFAK  +YN R  +E L+VSPIS+A A+QR GRAGRT PGKC+RLYTE +F N++   T PEI R NL++T+L LK +GI+DL+ FDFMDPP    ++ AL  L +L +LDD+G LT +G++MS FP+DP +S+ L+ S    CS+EI++I +MLSV N F RP++ Q  AD  K++ + H +G  L        ++Q          NF++ R LK A + K  +
Sbjct:  751 RKVVFATNIAETSITIDGIYYVVDPGFAKINIYNARAGIEQLIVSPISQAQANQRKGRAGRTGPGKCYRLYTESAFYNEMLENTVPEIQRQNLSHTILMLKAMGINDLLKFDFMDPPPKNLMLNALTELYHLQSLDDEGKLTNLGKEMSLFPMDPTLSRSLLSSVDNQCSDEIVTIISMLSVQNVFYRPKDRQLEADSKKAK-FHHPYGDHLTLLNVYTRWQQANYSEQYCKTNFLHFRHLKRARDVKSQI 1000          
BLAST of EY711118 vs. ExPASy Swiss-Prot
Match: CDC28_SCHPO (Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein cdc28 OS=Schizosaccharomyces pombe GN=cdc28 PE=2 SV=2)

HSP 1 Score: 233.802 bits (595), Expect = 9.981e-61
Identity = 116/202 (57.43%), Postives = 153/202 (75.74%), Query Frame = 1
Query:   46 RKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAML-SVPNCFVRPREAQKAADEAKS 648
            RK+V++TNIAETS+TIDG+ +VID GF KQ +YNPR  +ESL+  P S+ASA QR+GRAGR  PGKCFRLYT +++NN+L   T PEI R+NL N VL LK LGI++L+ FDFMD P PETLMR+LE+L  LGAL++ G LT++G +M+EFP DP +SK L+ S KY C  E+LSI +ML    + F RP++    AD+A++
Sbjct:  687 RKVVLATNIAETSITIDGVNFVIDSGFVKQNMYNPRTGMESLVSVPCSRASADQRAGRAGRVGPGKCFRLYTRRTYNNELDMVTSPEIQRTNLTNIVLLLKSLGINNLLDFDFMDAPPPETLMRSLELLYALGALNNRGELTKLGRQMAEFPTDPMLSKSLIASSKYGCVEEVLSIVSMLGEASSLFYRPKDKIMEADKARA 888          
BLAST of EY711118 vs. ExPASy Swiss-Prot
Match: PRP16_HUMAN (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Homo sapiens GN=DHX38 PE=1 SV=2)

HSP 1 Score: 229.18 bits (583), Expect = 2.458e-59
Identity = 119/247 (48.18%), Postives = 172/247 (69.64%), Query Frame = 1
Query:   46 RKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFVRPREAQKAADEAKSQVWSH*WGIPLHS*M-YTMLYKQTWRIH----LGVNDNFVNHRALK 771
            RK +V+TNIAETSLT+DGI++VID G+ K KV+NPR+ +++L + PIS+A+A+QRSGRAGRT PG+CFRLYT+ ++ N+L   T PEI R+NLAN VL LK LG+ DL+ F FMDPP  + ++ ++  L  LGALD+ G LT  G  M EFPLDP +SKML+ S    CS+EIL I +MLSVP  F RP+  ++ +D+ + +     + +P    + Y  +Y Q W+ +    +  ND+F++ +A++
Sbjct:  799 RKCIVATNIAETSLTVDGIMFVIDSGYCKLKVFNPRIGMDALQIYPISQANANQRSGRAGRTGPGQCFRLYTQSAYKNELLTTTVPEIQRTNLANVVLLLKSLGVQDLLQFHFMDPPPEDNMLNSMYQLWILGALDNTGGLTSTGRLMVEFPLDPALSKMLIVSCDMGCSSEILLIVSMLSVPAIFYRPKGREEESDQIREK-----FAVPESDHLTYLNVYLQ-WKNNNYSTIWCNDHFIHAKAMR 1039          
BLAST of EY711118 vs. ExPASy Swiss-Prot
Match: PRP16_BOVIN (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Bos taurus GN=DHX38 PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.458e-59
Identity = 119/247 (48.18%), Postives = 172/247 (69.64%), Query Frame = 1
Query:   46 RKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFVRPREAQKAADEAKSQVWSH*WGIPLHS*M-YTMLYKQTWRIH----LGVNDNFVNHRALK 771
            RK +V+TNIAETSLT+DGI++VID G+ K KV+NPR+ +++L + PIS+A+A+QRSGRAGRT PG+CFRLYT+ ++ N+L   T PEI R+NLAN VL LK LG+ DL+ F FMDPP  + ++ ++  L  LGALD+ G LT  G  M EFPLDP +SKML+ S    CS+EIL I +MLSVP  F RP+  ++ +D+ + +     + +P    + Y  +Y Q W+ +    +  ND+F++ +A++
Sbjct:  799 RKCIVATNIAETSLTVDGIMFVIDSGYCKLKVFNPRIGMDALQIYPISQANANQRSGRAGRTGPGQCFRLYTQSAYKNELLTTTVPEIQRTNLANVVLLLKSLGVQDLLQFHFMDPPPEDNMLNSMYQLWILGALDNTGGLTSTGRLMVEFPLDPALSKMLIVSCDMGCSSEILLIVSMLSVPAIFYRPKGREEESDQIREK-----FAVPESDHLSYLNVYLQ-WKNNNYSTIWCNDHFIHAKAMR 1039          
BLAST of EY711118 vs. ExPASy Swiss-Prot
Match: PRP16_YEAST (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Saccharomyces cerevisiae GN=PRP16 PE=1 SV=2)

HSP 1 Score: 218.394 bits (555), Expect = 3.038e-56
Identity = 109/203 (53.69%), Postives = 154/203 (75.86%), Query Frame = 1
Query:   46 RKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGI-DDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFVRPREAQKAADEAKSQ 651
            RKI+++TNIAETSLTI GI YVID G++K KVYNP++ ++SL+++PISKA+A QRSGRAGRT PG  +RLYTE +F  D+  QT PEI R+NL+NT+L LK L + D+L  F F+D P  +T + +L  L ++GA+D  G LT +G +M++FPL P +SK+L+ + +  CS+E+L+I +MLSVP  F RP+E QK AD A+++
Sbjct:  632 RKIIIATNIAETSLTIKGIRYVIDCGYSKLKVYNPKIGLDSLVITPISKANADQRSGRAGRTAPGTAYRLYTEDTFKEDMYLQTIPEIQRTNLSNTLLLLKSLDVTDELSKFPFIDKPPLQTFLSSLYELWFIGAIDTSGQLTPLGLQMAKFPLQPSLSKILLIAVRNGCSDEMLTIVSMLSVPQVFYRPKERQKEADIARNK 834          

HSP 2 Score: 22.3274 bits (46), Expect = 3.038e-56
Identity = 10/21 (47.62%), Postives = 12/21 (57.14%), Query Frame = 3
Query:  672 DPLTLLNVYHALQANMEDPSW 734
            D LTLLNV+   +AN     W
Sbjct:  841 DHLTLLNVFEQWRANNFSSHW 861          
BLAST of EY711118 vs. ExPASy Swiss-Prot
Match: PRP16_SCHPO (Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16 OS=Schizosaccharomyces pombe GN=prp16 PE=2 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 5.667e-56
Identity = 114/255 (44.71%), Postives = 174/255 (68.24%), Query Frame = 1
Query:   46 RKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFVRPREAQKAADEAKSQVWSH*WGIPLHS*MYTMLYKQTWRIHLGVND----NFVNHRALKSAGNGKHSL 798
            RK+VV+TNIAETSLT+ GI YV+D G+ K K+YN ++ +++L V+PIS+A+A+QR+GRAGRT PG  +RLYTE ++  ++   T PEI R+NL+NTVL LK LG++++  FDFMD P  +TLM +L  L  LGALD+ G LT +G+KMS FP+DP +SK+++ +  Y C+ EI++I +MLSVP+ F RP+E  + +D A+ +     + +P    +  +   Q W+ +   N     +F++ + LK A + +  L
Sbjct:  759 RKVVVATNIAETSLTVHGISYVVDTGYCKLKMYNSKLGIDTLQVTPISQANANQRAGRAGRTGPGIAYRLYTEMAYIREMFETTLPEIQRTNLSNTVLILKSLGVEEISDFDFMDRPPNDTLMASLYELWTLGALDNFGKLTTLGKKMSLFPMDPSLSKLIIIAEDYKCTEEIITIVSMLSVPSVFYRPKERAEESDAAREK-----FNVPESDHLMLLNIYQHWQRNGYSNSWCSKHFLHSKTLKRARDIRQQL 1008          
BLAST of EY711118 vs. ExPASy Swiss-Prot
Match: DHX35_PONAB (Probable ATP-dependent RNA helicase DHX35 OS=Pongo abelii GN=DHX35 PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.823e-54
Identity = 106/197 (53.81%), Postives = 147/197 (74.62%), Query Frame = 1
Query:   46 RKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTE-MGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFVRPREAQKAA 633
            RK++V+TN+AETS+TI GIVYVID GF K + YNPR  +E L+V P+S+ASA+QR+GR GR++ GKC+RLYTE++F+  L   T PE+ RSNLA  +L LK LGID+++ F FM PP  +++++ALE+L  LG LD D  LTE +G +++EFPL+P  +KML+ES  + CS EILSI+AM+ + N FV P   +  A
Sbjct:  336 RKVIVATNVAETSITISGIVYVIDCGFVKLRAYNPRTAIECLVVVPVSQASANQRAGRGGRSRSGKCYRLYTEEAFDK-LPQSTVPEMQRSNLAPVILQLKALGIDNVLRFHFMSPPPAQSMVQALELLYALGGLDKDCRLTEPLGMRIAEFPLNPMFAKMLLESGNFGCSQEILSIAAMMQIQNIFVVPPNQKSQA 531          
BLAST of EY711118 vs. ExPASy Swiss-Prot
Match: DHX35_HUMAN (Probable ATP-dependent RNA helicase DHX35 OS=Homo sapiens GN=DHX35 PE=1 SV=2)

HSP 1 Score: 212.616 bits (540), Expect = 2.381e-54
Identity = 105/190 (55.26%), Postives = 145/190 (76.32%), Query Frame = 1
Query:   46 RKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTE-MGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFVRP 612
            RK++V+TN+AETS+TI GIVYVID GF K + YNPR  +E L+V P+S+ASA+QR+GR GR++ GKC+RLYTE++F+  L   T PE+ RSNLA  +L LK LGID+++ F FM PP  +++++ALE+L  LG LD D  LTE +G +++EFPL+P  +KML+ES  + CS EILSI+AM+ + N FV P
Sbjct:  336 RKVIVATNVAETSITISGIVYVIDCGFVKLRAYNPRTAIECLVVVPVSQASANQRAGRGGRSRSGKCYRLYTEEAFDK-LPQSTVPEMQRSNLAPVILQLKALGIDNVLRFHFMSPPPAQSMVQALELLYALGGLDKDCRLTEPLGMRIAEFPLNPMFAKMLLESGNFGCSQEILSIAAMMQIQNIFVVP 524          
BLAST of EY711118 vs. ExPASy Swiss-Prot
Match: PRH1_SCHPO (Probable ATP-dependent RNA helicase prh1 OS=Schizosaccharomyces pombe GN=prh1 PE=2 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 3.330e-48
Identity = 108/252 (42.86%), Postives = 163/252 (64.68%), Query Frame = 1
Query:   46 RKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFVRPREAQKAADEAKSQVWSH*WGIPLHS*MYTMLYKQTWRIHL---------GVNDNFVNHRALKS 774
            RK+V+STNIAETS+TI GI YVID G AK K +N ++ +ESL V PIS+++A QRSGRAGR   G+C+R+YTE  F+  L  +T PEI R +L+  VLTLK  G +D+++F +MDPP+ E L+RALE L  +GALDD+G++ ++G +MS  PL P +++ ++ + ++NC +E++ + + LS  + F+ P+E +  A EA+ +         LHS    +      R +L           + NF+N RALK+
Sbjct:  364 RKVVLSTNIAETSVTISGIRYVIDTGLAKIKQFNSKLGLESLTVQPISQSAAMQRSGRAGREAAGQCYRIYTEADFDK-LPKETIPEIKRIDLSQAVLTLKARGQNDVINFHYMDPPSKEGLLRALEHLYSIGALDDNGHINDLGYQMSLIPLLPSLARAVLAAREHNCLSEVIDVVSCLSTDSMFLFPQEKRDEAIEARLKF--------LHSEGDLLTCLNALRQYLESSHDSRKQWCSQNFINRRALKT 606          
BLAST of EY711118 vs. ExPASy Swiss-Prot
Match: DHX40_HUMAN (Probable ATP-dependent RNA helicase DHX40 OS=Homo sapiens GN=DHX40 PE=1 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 1.184e-45
Identity = 95/200 (47.50%), Postives = 135/200 (67.50%), Query Frame = 1
Query:   46 RKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTEMGEKMSEFPLDPQMSKMLVESPKYNCSNEILSISAMLSVPNCFVRP--REAQKAADE 639
            RK V+STNI+ TSLTIDGI YV+D GF KQ  +NPR+ ++ L V PISK+ A QRSGRAGRT  GKCFR+Y++  +N  +     PEI R++L + VLTLK L I D++ F ++DPP    ++ AL+ L    A+D  G++T +G  M EFPL P ++  ++++   +C + +L I+AMLSV N F+RP   E QK A++
Sbjct:  339 RKCVISTNISATSLTIDGIRYVVDGGFVKQLNHNPRLGLDILEVVPISKSEALQRSGRAGRTSSGKCFRIYSKDFWNQCMPDHVIPEIKRTSLTSVVLTLKCLAIHDVIRFPYLDPPNERLILEALKQLYQCDAIDRSGHVTRLGLSMVEFPLPPHLTCAVIKAASLDCEDLLLPIAAMLSVENVFIRPVDPEYQKEAEQ 538          
The following BLAST results are available for this feature:
BLAST of EY711118 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
PRP22_YEAST5.292e-6249.40Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
CDC28_SCHPO9.981e-6157.43Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
PRP16_HUMAN2.458e-5948.18Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
PRP16_BOVIN2.458e-5948.18Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
PRP16_YEAST3.038e-5653.69Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
PRP16_SCHPO5.667e-5644.71Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
DHX35_PONAB1.823e-5453.81Probable ATP-dependent RNA helicase DHX35 OS=Pongo... [more]
DHX35_HUMAN2.381e-5455.26Probable ATP-dependent RNA helicase DHX35 OS=Homo ... [more]
PRH1_SCHPO3.330e-4842.86Probable ATP-dependent RNA helicase prh1 OS=Schizo... [more]
DHX40_HUMAN1.184e-4547.50Probable ATP-dependent RNA helicase DHX40 OS=Homo ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-004-A03-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711118 ID=EY711118; Name=EY711118; organism=Citrus sinensis; type=EST; length=883bp
TTTGAACCTGCTCCACCTCCAAGTAAGGAAGGTGGCCCCCCTGGAAGAAA
GATTGTGGTCTCTACAAACATAGCAGAAACTTCTTTGACCATAGATGGGA
TAGTTTATGTTATAGACCCAGGTTTTGCTAAACAAAAAGTTTATAATCCA
CGTGTGCGTGTGGAATCGTTATTGGTTTCTCCAATATCGAAAGCAAGTGC
ACATCAGCGGTCTGGGCGTGCTGGAAGAACTCAGCCAGGAAAATGTTTCC
GACTCTACACTGAGAAAAGTTTTAATAATGATCTGCAGCCGCAGACATAT
CCAGAAATATTACGTTCAAACCTTGCAAATACAGTCCTTACATTAAAGAA
GCTGGGTATTGATGATTTAGTGCATTTTGATTTTATGGACCCTCCTGCTC
CTGAGACACTGATGCGAGCATTAGAAGTTTTGAATTATTTGGGAGCACTG
GACGATGATGGAAACCTGACTGAAATGGGGGAGAAGATGAGTGAATTTCC
ACTAGATCCTCAAATGTCGAAGATGCTCGTTGAGAGTCCTAAATACAACT
GCTCAAATGAAATTCTTTCCATTTCTGCCATGCTTTCAGTACCCAATTGC
TTTGTCCGGCCTAGGGAGGCTCAAAAAGCTGCAGATGAAGCAAAAAGCCA
GGTTTGGTCACATTGATGGGGGATCCCCTTACACTCCTGAATGTATACCA
TGCTTTACAAGCAAACATGGAGGATCCATCTTGGGGTTAATGACAATTTT
GTCAATCATAGGGCATTGAAGTCCGCTGGAAATGGTAAACACAGCTTGTT
TCGATCATGGCCCGGGTCAACCTCAAGTTTGCAGCATGATTTTAAGGTCG
GGACTACTTGGCAACTTCAAAAAGCATGGTGGG
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