EY711118

Overview
NameEY711118
Unique NameEY711118
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711118 vs. ExPASy Swiss-Prot
Match: H962L_ASFM2 (Putative RNA Helicase B962L OS=African swine fever virus (isolate Tick/Malawi/Lil 20-1/1983) GN=Mal-080 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.412e-14
Identity = 54/162 (33.33%), Postives = 83/162 (51.23%), Query Frame = 1
Query:   46 RKIVVSTNIAETSLTIDGIVYVIDPGFAKQ-KVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRS-------NLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALE--VLNYLGALDDDG-NLTEMGEKMSEF 498
            R+++VST +AET LTI+ + YVIDPG+ +  + Y P      L+  P +++   QR GR GR  PG  + LYT+  F   +  Q YPEI+         N+    +   K G+      D +DPP  + L  A+E  ++  L    + G  LT++G+  S F
Sbjct:  348 RRVIVSTVVAETGLTIETLKYVIDPGWNRSVETYYPE-WAGGLITRPAAQSRIEQRKGRVGRVFPGHFYPLYTKHVF-EQIPAQQYPEIITEGPGAIFLNIVVETIKKNKEGVFKAEEIDMLDPPPTDALASAIERAIVGGLLTRGEKGLQLTQLGDIASRF 507          
BLAST of EY711118 vs. ExPASy Swiss-Prot
Match: C3H31_ARATH (Zinc finger CCCH domain-containing protein 31 OS=Arabidopsis thaliana GN=At2g47680 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.663e-13
Identity = 54/172 (31.40%), Postives = 92/172 (53.49%), Query Frame = 1
Query:   46 RKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTL-----KKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDG----NLTEMGEKMSEFPLDPQMSKMLVE 534
            RK++++TNIAE+S+TI  + YVID   + Q  ++P  + +++ +  +S++ A QR GR GRT  G+ +RL    +F N L+    P IL+ +L   VL +     + +   + +    MDPP P+ +  AL +L  + AL          T  G  ++ FPL    S ++V+
Sbjct:  322 RKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDPSRKRDAVQLVWVSRSQAEQRRGRTGRTCDGEVYRL-VPSAFFNKLEEHEPPSILKLSLRQQVLHICCTESRAINDANALLAKAMDPPDPDVVDDALRMLLSIQALRKSPRGRYEPTFYGRLLASFPLSFDASILVVK 492          
The following BLAST results are available for this feature:
BLAST of EY711118 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
H962L_ASFM21.412e-1433.33Putative RNA Helicase B962L OS=African swine fever... [more]
C3H31_ARATH2.663e-1331.40Zinc finger CCCH domain-containing protein 31 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-004-A03-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711118 ID=EY711118; Name=EY711118; organism=Citrus sinensis; type=EST; length=883bp
TTTGAACCTGCTCCACCTCCAAGTAAGGAAGGTGGCCCCCCTGGAAGAAA
GATTGTGGTCTCTACAAACATAGCAGAAACTTCTTTGACCATAGATGGGA
TAGTTTATGTTATAGACCCAGGTTTTGCTAAACAAAAAGTTTATAATCCA
CGTGTGCGTGTGGAATCGTTATTGGTTTCTCCAATATCGAAAGCAAGTGC
ACATCAGCGGTCTGGGCGTGCTGGAAGAACTCAGCCAGGAAAATGTTTCC
GACTCTACACTGAGAAAAGTTTTAATAATGATCTGCAGCCGCAGACATAT
CCAGAAATATTACGTTCAAACCTTGCAAATACAGTCCTTACATTAAAGAA
GCTGGGTATTGATGATTTAGTGCATTTTGATTTTATGGACCCTCCTGCTC
CTGAGACACTGATGCGAGCATTAGAAGTTTTGAATTATTTGGGAGCACTG
GACGATGATGGAAACCTGACTGAAATGGGGGAGAAGATGAGTGAATTTCC
ACTAGATCCTCAAATGTCGAAGATGCTCGTTGAGAGTCCTAAATACAACT
GCTCAAATGAAATTCTTTCCATTTCTGCCATGCTTTCAGTACCCAATTGC
TTTGTCCGGCCTAGGGAGGCTCAAAAAGCTGCAGATGAAGCAAAAAGCCA
GGTTTGGTCACATTGATGGGGGATCCCCTTACACTCCTGAATGTATACCA
TGCTTTACAAGCAAACATGGAGGATCCATCTTGGGGTTAATGACAATTTT
GTCAATCATAGGGCATTGAAGTCCGCTGGAAATGGTAAACACAGCTTGTT
TCGATCATGGCCCGGGTCAACCTCAAGTTTGCAGCATGATTTTAAGGTCG
GGACTACTTGGCAACTTCAAAAAGCATGGTGGG
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