EY711077

Overview
NameEY711077
Unique NameEY711077
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length723
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_PARL1 (50S ribosomal protein L6 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=rplF PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 9.349e-45
Identity = 93/170 (54.71%), Postives = 117/170 (68.82%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIGK P+EVP  VT+TL GQDL VKGP GEL L    +V V++ +S L+V    +T+RA  M GL RTL  N+V GV+ GF K L++ GVGYRAA++G+ L L+LGFSH V   IP+GI +   + T I ++G DK  +GQ AA IR +R PEPYKGKGVKY  E I R
Sbjct:    2 SRIGKYPVEVPKGVTVTLNGQDLAVKGPKGELKLTLVDDVTVEQGESGLKVAPREDTQRARAMWGLSRTLVKNIVTGVTDGFTKTLEINGVGYRAAIQGKNLQLNLGFSHDVLYPIPEGIDIKCTKPTEIVITGIDKQKVGQVAAEIRGYRGPEPYKGKGVKYAGEYIFR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_SYNPW (50S ribosomal protein L6 OS=Synechococcus sp. (strain WH7803) GN=rplF PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.221e-44
Identity = 91/170 (53.53%), Postives = 116/170 (68.24%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIGK PI +P  V+++L G  + VKGP GEL    P  V V++ D+ + V  T E R++ + HGL RTL  NM+ GVSKG+ KKL++VGVG RA ++G+ LV+S G+SHPV M  P+GI   VE NT +TVSG DK  +G  AA IR  RPPEPYKGKG+KY  E I R
Sbjct:    2 SRIGKSPIPIPDKVSVSLDGLAVTVKGPKGELKRTLPDGVTVNQVDNTIVVAPTSEKRQSRERHGLCRTLVANMIEGVSKGYSKKLEIVGVGSRAQVKGKTLVVSAGYSHPVEMLAPEGITFAVENNTNVTVSGTDKELVGNEAAKIRAIRPPEPYKGKGIKYAGERILR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_MICAN (50S ribosomal protein L6 OS=Microcystis aeruginosa (strain NIES-843) GN=rplF PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.221e-44
Identity = 86/170 (50.59%), Postives = 119/170 (70.00%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIGK+PI +P+ VT+ + G  + VKGP G L    P  V ++++   L V +  ++R A + HGL RTL  NMV GV+ GF+K+L + GVGYRA  +G  LVL++G+S PV M +PDG+ V VE +T++ VSG DK A+G  AA IR+ RPPEPYKGKG++Y+ EV+RR
Sbjct:    2 SRIGKRPIPIPNKVTVDIDGATVTVKGPKGTLQRTLPTAVAINKDGETLLVTRQDDSRTARERHGLCRTLVANMVEGVATGFQKRLDIQGVGYRAQAQGSKLVLNVGYSKPVEMEMPDGVSVAVENSTQVIVSGIDKEAVGNTAAKIREVRPPEPYKGKGIRYLGEVVRR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_MAGSM (50S ribosomal protein L6 OS=Magnetococcus sp. (strain MC-1) GN=rplF PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.221e-44
Identity = 87/170 (51.18%), Postives = 118/170 (69.41%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIGK+P+ VP  V + + G  +  KG LGEL+  +   +   +E   + V  +   ++++ + GL RTL DNMVVGVS+GF K+L++ GVGYRAA++G+ L LSLGFSHPV   +P+G++  VE+NT ITV GYDK  +GQ  A IR WRPPEPYKGKGV+YV E + R
Sbjct:    2 SRIGKKPVVVPDGVDLKINGTVVTAKGKLGELTRQFHEAITFAQEGKEVNVAVSGTDKKSSSLWGLSRTLLDNMVVGVSQGFSKQLEIQGVGYRAAVKGRTLELSLGFSHPVNYELPNGLEATVEKNTLITVKGYDKEVLGQACAEIRSWRPPEPYKGKGVRYVGEFVLR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_SYNS3 (50S ribosomal protein L6 OS=Synechococcus sp. (strain CC9311) GN=rplF PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.720e-44
Identity = 90/170 (52.94%), Postives = 114/170 (67.06%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIGK PI +P  V +TL G  + VKGP GEL    P  V V++ D+ + V  T   R + + HGL RTL  NMV+GVS+G+ KKL++VGVG RA ++G+ LV+S G+SHPV +  P+GI   VE NT +TVSG DK  +G  AA IR  RPPEPYKGKG+KY  E I R
Sbjct:    2 SRIGKNPIPIPDKVNVTLSGLAVTVKGPKGELKRTLPSGVSVNQVDNSIVVAPTSTKRSSRERHGLCRTLVANMVIGVSQGYSKKLEIVGVGSRAQVKGKTLVVSAGYSHPVEVVPPEGITFTVENNTNVTVSGTDKELVGNEAAKIRAIRPPEPYKGKGIKYAGERILR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_BRASB (50S ribosomal protein L6 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=rplF PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 6.060e-44
Identity = 90/170 (52.94%), Postives = 118/170 (69.41%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIGK+P+ VPS VT T+ GQ +K+KGP G+L  +   +V V  E+  +RV    ET+RA  ++G  R    N+V GV+KGFEKKL++ GVGYRAA++G+ L L+LG+SH V   IP+GI + V + T ITV+G D   +GQ AA IR +RPPEPYKGKGVKY  E I R
Sbjct:    2 SRIGKKPVTVPSGVTATVDGQTVKMKGPKGQLQFIVHDDVDVKFENGQVRVAPRSETKRARSLYGTARAQIANLVEGVTKGFEKKLEITGVGYRAAMQGKNLQLALGYSHDVVYQIPEGITIAVPKPTEITVTGIDPQRVGQVAAEIRAYRPPEPYKGKGVKYAGEFIFR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_SYNY3 (50S ribosomal protein L6 OS=Synechocystis sp. (strain PCC 6803) GN=rplF PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.914e-44
Identity = 87/170 (51.18%), Postives = 117/170 (68.82%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIGK+PI +P+ V++ + G  L VKGP G L    P +V V +E   + V +  E+R A + HGL RTL  NMV GV++GFE++L++ GVGYRA  +G  L L++G+S PV MT+P GI+V VE NT++ VSG DK  +G  AA IR  RPPEPYKGKG++Y  E +RR
Sbjct:    2 SRIGKRPIPLPAKVSVDIQGSHLSVKGPKGSLERQLPEKVIVAQEGETITVTRQDESRTARERHGLVRTLVANMVDGVAQGFERRLEIQGVGYRAQAQGNKLTLNVGYSKPVEMTMPQGIEVKVENNTQVIVSGIDKELLGNTAAKIRAVRPPEPYKGKGIRYQGEYVRR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_PROM9 (50S ribosomal protein L6 OS=Prochlorococcus marinus (strain MIT 9312) GN=rplF PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.914e-44
Identity = 91/170 (53.53%), Postives = 113/170 (66.47%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIGK P+ +P  VT+ L G  + VKGP GEL  + P  V  D++D+ + V  T     + Q HGL R L  NMV GV++GF KKL++VGVG RA ++G+ LV+S G+SHPV M  PDGI   VE NT +TVSG DK  +G  AA IR  RPPEPYKGKG+KY DE I R
Sbjct:    2 SRIGKTPVLIPEKVTVDLDGLIVTVKGPKGELKRLMPEGVSFDKKDNTVVVSPTTNKIHSRQRHGLCRALIANMVEGVTQGFSKKLEIVGVGSRAQVKGKNLVVSAGYSHPVEMIPPDGITYKVESNTNVTVSGIDKEIVGNEAAKIRSIRPPEPYKGKGIKYHDERILR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_ALHEH (50S ribosomal protein L6 OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=rplF PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.914e-44
Identity = 87/166 (52.41%), Postives = 116/166 (69.88%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDE 515
            SR+ K+P++VPS V + L GQD+KVKGP GEL+      V V++ D  LRV+  ++ RRA  + G  R L +NMV GVS+GFE+KL++ GVGYRA ++G+ L L+LGFSHPV   +P+GI +     T I V G DK  +G+ AA IR +RPPEPYKGKGV+Y DE
Sbjct:    2 SRVAKRPVKVPSGVEVKLDGQDVKVKGPKGELAWTVHDWVAVEQADGELRVQAQLDDRRAVALAGTTRALLNNMVTGVSQGFERKLELRGVGYRAQVQGKNLNLTLGFSHPVDYPVPEGITIEAPSQTEIVVKGADKQQVGEVAAQIRAFRPPEPYKGKGVRYADE 167          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_RHOPT (50S ribosomal protein L6 OS=Rhodopseudomonas palustris (strain TIE-1) GN=rplF PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.034e-43
Identity = 89/170 (52.35%), Postives = 116/170 (68.24%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SR+GK+P+ VPS VT T+ GQ +K+KGP G+L  V   +V V  ED  ++V    ET RA  ++G  R    N+V GV+KGFEKKL++ GVGYRAA++G+ L L+LG+SH V   IP+GI + V + T I V G D   +GQ AA IR +RPPEPYKGKGV+Y DE I R
Sbjct:    2 SRVGKKPVTVPSGVTATVEGQTVKMKGPKGQLQFVVHDDVDVKFEDGAVKVAPRHETNRARALYGTARAQIANLVEGVTKGFEKKLEITGVGYRAAMQGKKLQLALGYSHDVLYDIPEGITITVPKPTEINVVGIDPQKVGQVAAEIRDYRPPEPYKGKGVRYADEFIFR 171          
The following BLAST results are available for this feature:
BLAST of EY711077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL6_PARL19.349e-4554.7150S ribosomal protein L6 OS=Parvibaculum lavamenti... [more]
RL6_SYNPW1.221e-4453.5350S ribosomal protein L6 OS=Synechococcus sp. (str... [more]
RL6_MICAN1.221e-4450.5950S ribosomal protein L6 OS=Microcystis aeruginosa... [more]
RL6_MAGSM1.221e-4451.1850S ribosomal protein L6 OS=Magnetococcus sp. (str... [more]
RL6_SYNS32.720e-4452.9450S ribosomal protein L6 OS=Synechococcus sp. (str... [more]
RL6_BRASB6.060e-4452.9450S ribosomal protein L6 OS=Bradyrhizobium sp. (st... [more]
RL6_SYNY37.914e-4451.1850S ribosomal protein L6 OS=Synechocystis sp. (str... [more]
RL6_PROM97.914e-4453.5350S ribosomal protein L6 OS=Prochlorococcus marinu... [more]
RL6_ALHEH7.914e-4452.4150S ribosomal protein L6 OS=Alkalilimnicola ehrlic... [more]
RL6_RHOPT1.034e-4352.3550S ribosomal protein L6 OS=Rhodopseudomonas palus... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-003-E06-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711077 ID=EY711077; Name=EY711077; organism=Citrus sinensis; type=EST; length=723bp
CCACGCGTCCGAAGGAATCAAGAATAGGAAAACAGCCTATAGAAGTGCCA
TCCAATGTGACAATCACATTAGGAGGTCAAGATCTAAAAGTAAAGGGTCC
ACTGGGAGAACTTTCACTTGTTTATCCACGAGAAGTGAAGGTTGATAGGG
AGGACTCATTCCTGAGGGTCAGAAAGACTGTAGAGACAAGAAGGGCCAAT
CAAATGCACGGGCTTTTCAGGACACTGACTGACAACATGGTGGTTGGAGT
ATCGAAAGGGTTTGAGAAGAAGCTTCAAATGGTTGGTGTTGGATATCGTG
CTGCATTAGAAGGACAAGTCTTGGTATTGAGTCTTGGGTTCTCGCATCCA
GTTAGGATGACAATCCCAGATGGCATAAAAGTGAATGTGGAGGAAAACAC
CAGGATCACTGTTAGTGGATACGATAAAAGCGCAATTGGTCAGTTTGCTG
CTTCCATCAGGAAATGGAGACCCCCAGAACCGTACAAGGGAAAAGGAGTG
AAATATGTTGATGAAGTTATCAGAAGGAAGGAGGGAAAAGCAGGGAAGAA
GAAGTAATAGATCTTCGATTGTTTTTTCCATTGTCTCATTTTTTTTTTTT
TTTGTTATAAATATGCGTTGTTGAATGTACTTAATGCAATTAAAGCAATG
CCTTGCAATCTATGAGTAGTTGATTATTTCACTCNNNNNANNGNNGANGG
GNCAATTTTGATTTACCTGAAAA
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