EY711077

Overview
NameEY711077
Unique NameEY711077
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length723
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_RHOPA (50S ribosomal protein L6 OS=Rhodopseudomonas palustris GN=rplF PE=1 SV=3)

HSP 1 Score: 176.792 bits (447), Expect = 1.034e-43
Identity = 89/170 (52.35%), Postives = 116/170 (68.24%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SR+GK+P+ VPS VT T+ GQ +K+KGP G+L  V   +V V  ED  ++V    ET RA  ++G  R    N+V GV+KGFEKKL++ GVGYRAA++G+ L L+LG+SH V   IP+GI + V + T I V G D   +GQ AA IR +RPPEPYKGKGV+Y DE I R
Sbjct:    2 SRVGKKPVTVPSGVTATVEGQTVKMKGPKGQLQFVVHDDVDVKFEDGAVKVAPRHETNRARALYGTARAQIANLVEGVTKGFEKKLEITGVGYRAAMQGKKLQLALGYSHDVLYDIPEGITITVPKPTEINVVGIDPQKVGQVAAEIRDYRPPEPYKGKGVRYADEFIFR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_PROM4 (50S ribosomal protein L6 OS=Prochlorococcus marinus (strain MIT 9211) GN=rplF PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.034e-43
Identity = 91/170 (53.53%), Postives = 113/170 (66.47%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIGKQPI VP  V + L G  L VKGP GELS   P  V + + D+ + V      R++ + HGL R+L  NMV GVSKG+ KKL++VGVG RA ++G+ L++S G+SHPV +  PDGI   VE NT +TVSG DK  +G  AA IR  RPPEPYKGKG+KY  E I R
Sbjct:    2 SRIGKQPIPVPEKVAVELDGLSLTVKGPKGELSRTLPEGVSISQVDNSIVVSAINSKRKSRERHGLSRSLVANMVEGVSKGYSKKLEIVGVGSRAQVKGKNLIVSAGYSHPVEVIPPDGITFVVENNTNVTVSGIDKELVGNEAAKIRAIRPPEPYKGKGIKYAGERIIR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_OLICO (50S ribosomal protein L6 OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=rplF PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.034e-43
Identity = 88/170 (51.76%), Postives = 117/170 (68.82%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SR+GK+P+ + S VT  + GQ +KVKGP G  S     +V V+ +D+ +RV    ET+RA  ++G  R    N+V GV+KGFEKKL++ GVGYRAAL+G+ L LSLG+SH V   +P+GI + V + T ITV+G D   +GQ AA IR +RPPEPYKGKGVKY +E I R
Sbjct:    2 SRVGKRPVAIASGVTANVEGQTVKVKGPKGTRSFTVHDDVSVELKDNVIRVAPRFETKRAQSLYGTARAQIANLVEGVTKGFEKKLEITGVGYRAALQGKNLQLSLGYSHDVVYPVPEGITITVPKPTEITVAGIDSQRVGQVAAEIRGYRPPEPYKGKGVKYANEFIFR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_METSB (50S ribosomal protein L6 OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=rplF PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.034e-43
Identity = 89/170 (52.35%), Postives = 115/170 (67.65%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIGK+P+ +PS VT  + GQ + VKG  G+LS   P +V V   D  + V    ET+RA  M G+ R++ +N+VVGVSKGFE+KL++ GVGY+AA+ G+ L LSLGFSH V   IPDGI +   + T + +SG DK  +GQ A+ IR  RPPEPYKGKGVKY  E I R
Sbjct:    2 SRIGKKPVAIPSGVTANVDGQLISVKGGKGQLSFAAPEDVTVVLGDGGIEVSPRNETKRARAMWGMTRSMVNNLVVGVSKGFERKLEITGVGYKAAVSGKNLQLSLGFSHDVTFPIPDGISIVAAKPTEVAISGIDKRQVGQIASEIRALRPPEPYKGKGVKYAGEFIFR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_BRASO (50S ribosomal protein L6 OS=Bradyrhizobium sp. (strain ORS278) GN=rplF PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.034e-43
Identity = 88/170 (51.76%), Postives = 119/170 (70.00%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIGK+P+ VPS VT T+ GQ +K+KGP G+L  +   +V+V  E+  ++V    ET+RA  ++G  R    N+V GV+KGFEKKL++ GVGYRAA++G+ L L+LG+SH V   IP+GI + V + T IT++G D   +GQ AA IR +RPPEPYKGKGVKY  E I R
Sbjct:    2 SRIGKKPVTVPSGVTATVDGQTVKMKGPKGQLQFLVHDDVEVKFENGQVKVAPRAETKRARSLYGTARAQIANLVEGVTKGFEKKLEITGVGYRAAMQGKNLQLALGYSHDVVYQIPEGITIAVPKPTEITITGIDPQRVGQVAAEIRAYRPPEPYKGKGVKYAGEFIFR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_BACHD (50S ribosomal protein L6 OS=Bacillus halodurans GN=rplF PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.034e-43
Identity = 85/170 (50.00%), Postives = 116/170 (68.24%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIG +P+E+PS VT+T+ G D+ VKGP GEL   +  E+ V  ED+ + V +  + +    +HG  R+L  NMV GVSKGFEK L++VGVGYRA   GQ LVL++G+SHPV +    GI++ V  NT++TV G DK  +G  A++IR  R PEPYKGKG++Y  E +RR
Sbjct:    2 SRIGNKPVEIPSGVTVTVNGADVTVKGPKGELKRTFNPEIVVKVEDNTVVVERPSDKKEHRALHGTTRSLISNMVEGVSKGFEKSLELVGVGYRAQKSGQKLVLNVGYSHPVEIVPEKGIEIEVPSNTKVTVKGIDKERVGAVASNIRSVRLPEPYKGKGIRYEGEYVRR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_THICR (50S ribosomal protein L6 OS=Thiomicrospira crunogena (strain XCL-2) GN=rplF PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.350e-43
Identity = 89/170 (52.35%), Postives = 112/170 (65.88%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRI K PI +PS V +T+ G D+ VKG  G LS  +   V V  ED  + V    E++ A    G  R++ +NMV+GV++GFEKKLQ+VGVGYRA  +G+VL L+LGFSHPV   +P+G+ V     T I V G DK  +GQ AA IR +RPPEPYKGKGVKY DE I R
Sbjct:    2 SRIAKSPITLPSGVDVTINGTDVSVKGSKGALSKTFNHAVSVSLEDGVVTVAPKNESKNAWAQAGTARSIINNMVLGVTEGFEKKLQLVGVGYRAQAQGKVLNLTLGFSHPVNHELPEGVTVETPSQTEIVVKGADKQVVGQVAAEIRGYRPPEPYKGKGVKYADEYILR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_PROM5 (50S ribosomal protein L6 OS=Prochlorococcus marinus (strain MIT 9515) GN=rplF PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.350e-43
Identity = 87/170 (51.18%), Postives = 115/170 (67.65%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIGK P+++P  V++ + G  + VKGP GEL  + P  V   ++++ + V  +   R + + HGL RTL  NMV GV+ G+ KKL++VGVG RA ++G+ LV+S G+SHPV MT PDGI   VE NT +TVSG DK  +G  AA IR  RPPEPYKGKG+KY DE I R
Sbjct:    2 SRIGKSPVQIPDKVSVDINGLTITVKGPKGELKRLMPEGVDFVQKENQIVVTPSTTKRYSRERHGLCRTLISNMVQGVTDGYSKKLEIVGVGSRAQVKGKTLVVSAGYSHPVEMTPPDGITYKVESNTNVTVSGIDKEIVGNEAAKIRSIRPPEPYKGKGIKYQDERIIR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_COLP3 (50S ribosomal protein L6 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=rplF PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.350e-43
Identity = 89/170 (52.35%), Postives = 114/170 (67.06%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SR+ K P+ VP+ VTITL GQD+ VKGP+GELS     +V V +E++ +      + + A    G  R L +NMV GVSKGFEKKL + GVGYRA   G+ L LSLGFSHP++  IP+GI       T +T+ G DK  +GQ AA+IR +R PEPYKGKGV+YVDE +RR
Sbjct:    2 SRVAKAPVVVPAGVTITLSGQDITVKGPIGELSRTIHSDVVVSQEENNIITNIVADVKGAWAQAGTTRALINNMVEGVSKGFEKKLVLQGVGYRAKAAGKSLDLSLGFSHPIKHAIPEGITCETPSQTEVTLKGCDKHLVGQTAANIRAYRKPEPYKGKGVRYVDEYVRR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RK6_ODOSI (50S ribosomal protein L6, chloroplastic OS=Odontella sinensis GN=rpl6 PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.350e-43
Identity = 84/170 (49.41%), Postives = 114/170 (67.06%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIGK PI++P+NV IT  G DL VKG  G L    P  + ++  D  L V     TR    +HGL+RTL +NMV GVS+ F+  L + GVGYRA+++G  ++L+LG+SHPV + IP+GI V V +NT I +   DK  +G FA++IR WRPPEPYKGKG+ Y  E+++R
Sbjct:    2 SRIGKLPIKIPANVDITCSGPDLTVKGKFGTLHNTIPDAIGIEEIDGSLIVNVKDNTRSNRALHGLYRTLINNMVTGVSEQFQLTLNLQGVGYRASVQGNSIILNLGYSHPVELVIPEGISVEVVQNTTINLKACDKGNLGLFASNIRSWRPPEPYKGKGILYKGEIVKR 171          
The following BLAST results are available for this feature:
BLAST of EY711077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL6_RHOPA1.034e-4352.3550S ribosomal protein L6 OS=Rhodopseudomonas palus... [more]
RL6_PROM41.034e-4353.5350S ribosomal protein L6 OS=Prochlorococcus marinu... [more]
RL6_OLICO1.034e-4351.7650S ribosomal protein L6 OS=Oligotropha carboxidov... [more]
RL6_METSB1.034e-4352.3550S ribosomal protein L6 OS=Methylocella silvestri... [more]
RL6_BRASO1.034e-4351.7650S ribosomal protein L6 OS=Bradyrhizobium sp. (st... [more]
RL6_BACHD1.034e-4350.0050S ribosomal protein L6 OS=Bacillus halodurans GN... [more]
RL6_THICR1.350e-4352.3550S ribosomal protein L6 OS=Thiomicrospira crunoge... [more]
RL6_PROM51.350e-4351.1850S ribosomal protein L6 OS=Prochlorococcus marinu... [more]
RL6_COLP31.350e-4352.3550S ribosomal protein L6 OS=Colwellia psychrerythr... [more]
RK6_ODOSI1.350e-4349.4150S ribosomal protein L6, chloroplastic OS=Odontel... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-003-E06-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711077 ID=EY711077; Name=EY711077; organism=Citrus sinensis; type=EST; length=723bp
CCACGCGTCCGAAGGAATCAAGAATAGGAAAACAGCCTATAGAAGTGCCA
TCCAATGTGACAATCACATTAGGAGGTCAAGATCTAAAAGTAAAGGGTCC
ACTGGGAGAACTTTCACTTGTTTATCCACGAGAAGTGAAGGTTGATAGGG
AGGACTCATTCCTGAGGGTCAGAAAGACTGTAGAGACAAGAAGGGCCAAT
CAAATGCACGGGCTTTTCAGGACACTGACTGACAACATGGTGGTTGGAGT
ATCGAAAGGGTTTGAGAAGAAGCTTCAAATGGTTGGTGTTGGATATCGTG
CTGCATTAGAAGGACAAGTCTTGGTATTGAGTCTTGGGTTCTCGCATCCA
GTTAGGATGACAATCCCAGATGGCATAAAAGTGAATGTGGAGGAAAACAC
CAGGATCACTGTTAGTGGATACGATAAAAGCGCAATTGGTCAGTTTGCTG
CTTCCATCAGGAAATGGAGACCCCCAGAACCGTACAAGGGAAAAGGAGTG
AAATATGTTGATGAAGTTATCAGAAGGAAGGAGGGAAAAGCAGGGAAGAA
GAAGTAATAGATCTTCGATTGTTTTTTCCATTGTCTCATTTTTTTTTTTT
TTTGTTATAAATATGCGTTGTTGAATGTACTTAATGCAATTAAAGCAATG
CCTTGCAATCTATGAGTAGTTGATTATTTCACTCNNNNNANNGNNGANGG
GNCAATTTTGATTTACCTGAAAA
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