EY710929

Overview
NameEY710929
Unique NameEY710929
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length834
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710929 vs. ExPASy Swiss-Prot
Match: PABP4_HUMAN (Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.686e-14
Identity = 37/69 (53.62%), Postives = 55/69 (79.71%), Query Frame = 2
Query:  320 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 526
            AS LA A P++Q+ +LGE L+PL+  +  + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct:  556 ASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 624          
BLAST of EY710929 vs. ExPASy Swiss-Prot
Match: PABP1_PONAB (Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.686e-14
Identity = 37/69 (53.62%), Postives = 55/69 (79.71%), Query Frame = 2
Query:  320 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 526
            AS LA+A P++Q+ +LGE L+PL+  +    A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct:  547 ASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 615          
BLAST of EY710929 vs. ExPASy Swiss-Prot
Match: PABP1_HUMAN (Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.686e-14
Identity = 37/69 (53.62%), Postives = 55/69 (79.71%), Query Frame = 2
Query:  320 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 526
            AS LA+A P++Q+ +LGE L+PL+  +    A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct:  547 ASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 615          
BLAST of EY710929 vs. ExPASy Swiss-Prot
Match: PABP1_BOVIN (Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.686e-14
Identity = 37/69 (53.62%), Postives = 55/69 (79.71%), Query Frame = 2
Query:  320 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 526
            AS LA+A P++Q+ +LGE L+PL+  +    A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct:  547 ASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 615          
BLAST of EY710929 vs. ExPASy Swiss-Prot
Match: PABP_EMENI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Emericella nidulans GN=pab1 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.202e-14
Identity = 64/173 (36.99%), Postives = 84/173 (48.55%), Query Frame = 2
Query:  110 GPMQQAQQ-----PIPLMQPRMLPRGRIY-----RYPPGCNIPDVPVAGVP---------GGMLPGPYDIGGMPFRDAAFSQP---MQTGAL-ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPS 559
            GP QQ        P+  MQ   +P G  Y     ++  G     VP  G P         GG+  G     G   R  A  QP      G L A AL+ A P+QQ+ +LGE LYP +   + + A K+TGMLLEMD TE+L LLE  EAL+AKV EA+ V     + ++  P+
Sbjct:  542 GPNQQIPPNFQGLPMGAMQGPGIPNGMGYPMVQGQFGGGRGRGQVPGMGGPMRGGYGGGRGGVPLGGQMRPGQGGRGQAVGQPGPETPVGVLTAQALSAAPPQQQKQMLGEALYPKIQATQPELAGKITGMLLEMDNTELLGLLEDDEALRAKVDEALSVYDEYMKNKSDEPA 714          
BLAST of EY710929 vs. ExPASy Swiss-Prot
Match: PABP3_HUMAN (Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.875e-14
Identity = 38/77 (49.35%), Postives = 59/77 (76.62%), Query Frame = 2
Query:  320 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQAT 550
            AS LA+A P++Q+ +LGE L+PL+  +    A K+TGMLLE+D +E+L++LESPE+L++KV EA+ VL+    ++AT
Sbjct:  542 ASRLASAPPQKQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLYMLESPESLRSKVDEAVAVLQAHQAKEAT 618          
BLAST of EY710929 vs. ExPASy Swiss-Prot
Match: EPABA_XENLA (Embryonic polyadenylate-binding protein A OS=Xenopus laevis GN=epabp-A PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.875e-14
Identity = 36/69 (52.17%), Postives = 54/69 (78.26%), Query Frame = 2
Query:  320 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 526
            AS LA A P++Q+ +LGE +YP++ ++    A K+TGMLLE+D +E+LH+LESPE+L +KV EA+ VL+
Sbjct:  544 ASLLAGAPPQEQKQMLGERIYPVIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVEEAVAVLQ 612          
BLAST of EY710929 vs. ExPASy Swiss-Prot
Match: PABPB_XENLA (Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-B PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.755e-14
Identity = 37/69 (53.62%), Postives = 54/69 (78.26%), Query Frame = 2
Query:  320 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 526
            AS LA A P++Q+ +LGE L+PL+  +    A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct:  545 ASMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 613          
BLAST of EY710929 vs. ExPASy Swiss-Prot
Match: PABPA_XENLA (Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-A PE=1 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 3.755e-14
Identity = 37/69 (53.62%), Postives = 54/69 (78.26%), Query Frame = 2
Query:  320 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 526
            AS LA A P++Q+ +LGE L+PL+  +    A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL+
Sbjct:  545 ASMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 613          
BLAST of EY710929 vs. ExPASy Swiss-Prot
Match: PABP_CHAGB (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Chaetomium globosum GN=PAB1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.406e-14
Identity = 58/164 (35.37%), Postives = 84/164 (51.22%), Query Frame = 2
Query:  110 GPMQQAQQPIPLMQPRMLPRGR-IYRYPPGCNIPDVPVAGVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASA--------LANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQ---ATGPSPT 565
            GP  +  Q +P+  P+ +P G  +  +PP     +  + G  G    G +  G    R A  + P+  G   +A         A  +P+QQ+ +LGENL+P +  L+ D A K+TGMLLEMD  E+++LLE   AL AKV EAM V     + Q     GP+PT
Sbjct:  608 GPGGRGMQGMPV--PQGMPGGPGMAGFPPNGRPQNGNMGGRGGPGRGGNFAAG----RGAPPAGPLAAGGELNASSLLQSQLTATNNPQQQKQILGENLFPKIQALQPDLAGKITGMLLEMDNAELVNLLEDEAALVAKVNEAMAVYDEYVKSQQGPGQGPAPT 765          
The following BLAST results are available for this feature:
BLAST of EY710929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
PABP4_HUMAN1.686e-1453.62Polyadenylate-binding protein 4 OS=Homo sapiens GN... [more]
PABP1_PONAB1.686e-1453.62Polyadenylate-binding protein 1 OS=Pongo abelii GN... [more]
PABP1_HUMAN1.686e-1453.62Polyadenylate-binding protein 1 OS=Homo sapiens GN... [more]
PABP1_BOVIN1.686e-1453.62Polyadenylate-binding protein 1 OS=Bos taurus GN=P... [more]
PABP_EMENI2.202e-1436.99Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP3_HUMAN2.875e-1449.35Polyadenylate-binding protein 3 OS=Homo sapiens GN... [more]
EPABA_XENLA2.875e-1452.17Embryonic polyadenylate-binding protein A OS=Xenop... [more]
PABPB_XENLA3.755e-1453.62Polyadenylate-binding protein 1-B OS=Xenopus laevi... [more]
PABPA_XENLA3.755e-1453.62Polyadenylate-binding protein 1-A OS=Xenopus laevi... [more]
PABP_CHAGB6.406e-1435.37Polyadenylate-binding protein, cytoplasmic and nuc... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-001-G07-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710929 ID=EY710929; Name=EY710929; organism=Citrus sinensis; type=EST; length=834bp
CCACGCGTCCGAGCAGCAGCTGGTTCCGGGAATGAGGCCAAACTATTTTG
TTCCAATGGTCCAGCCAGGTCAGCAGAACCAGCGCCCAGGAGGTAGACGT
TCTGGAACTGGCCCCATGCAACAAGCACAACAACCAATTCCACTTATGCA
GCCGCGGATGCTTCCAAGAGGTCGCATCTACCGATACCCTCCTGGTTGCA
ACATACCAGATGTTCCCGTTGCTGGTGTTCCTGGAGGCATGCTTCCTGGT
CCTTACGACATTGGTGGAATGCCGTTCAGAGATGCTGCATTTTCACAGCC
TATGCAAACAGGGGCTTTGGCATCTGCCCTTGCTAATGCGTCTCCTGAGC
AACAGAGGACGTTACTGGGAGAAAATCTATACCCACTTGTAGATCAATTG
GAGCATGATAACGCTGCAAAAGTAACAGGCATGCTTTTAGAGATGGACCA
GACTGAAGTTTTGCACTTGCTAGAGTCGCCAGAAGCCTTGAAAGCGAAAG
TCGCAGAGGCAATGGAAGTATTAAGGAATGTAGCTCAGCAGCAGGCCACC
GGCCCAAGCCCAACTGATCGGGTGGCCTCACTGTCGCTGAATGACAACAT
TGTTTCTTGAGTTTTAGGCACCCATCTATGCTAGTAATATAGCCTAAGCA
CTTAATTTTGGAATAAAATTTGGTGTGGGGTTGAGTCTATTTGCGATAGT
TTGCTGGAGAAAGTCGGGGGAATACTTTGGTACTGAACTTTCTTTGTAGC
GCGACCATATAAGATCAGCGCAATTTTGCCCAAGTTATGCCAGAATTAAT
TAAATTTGCTTGATCATCAAAAAAAAAAAAAAGG
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