EY710929

Overview
NameEY710929
Unique NameEY710929
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length834
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710929 vs. ExPASy Swiss-Prot
Match: EPABB_XENLA (Embryonic polyadenylate-binding protein B OS=Xenopus laevis GN=epabp-B PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.864e-13
Identity = 39/82 (47.56%), Postives = 60/82 (73.17%), Query Frame = 2
Query:  320 ASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR-NVAQQQATGPSP 562
            AS LA A  ++Q+ +LGE +YPL+ ++    A K+TGMLLE+D +E+LH+LESPE+L +KV EA+ VL+ + A++ A   +P
Sbjct:  544 ASLLAAAPLQEQKQILGERIYPLIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVEEAVAVLQAHQAKESAPKSAP 625          
BLAST of EY710929 vs. ExPASy Swiss-Prot
Match: PABP_NEOFI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.434e-13
Identity = 41/88 (46.59%), Postives = 55/88 (62.50%), Query Frame = 2
Query:  308 TGALASALANA-SPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPSPTD 568
            TG L +   NA  P QQ+ +LGE LYP +   + + A K+TGMLLEMD TE+L LLE  EAL+AKV EA+ V     + +  G +P +
Sbjct:  646 TGGLTAQTLNAVPPPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNTELLGLLEDEEALRAKVDEALSVYDEYMKNKGEGEAPAE 733          
BLAST of EY710929 vs. ExPASy Swiss-Prot
Match: PABP_ASPFU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus fumigatus GN=pab1 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.152e-13
Identity = 39/90 (43.33%), Postives = 53/90 (58.89%), Query Frame = 2
Query:  299 PMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPSPTD 568
            P   G  A  L+   P QQ+ +LGE LYP +   + + A K+TGMLLEMD  E+L LLE  EAL+AKV EA+ V     + +  G +P +
Sbjct:  646 PATGGLTAQTLSAVPPPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNNELLGLLEDEEALRAKVDEALSVYDEYMKNKGEGEAPAE 735          
BLAST of EY710929 vs. ExPASy Swiss-Prot
Match: PABP_ASPTN (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=pab1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.423e-13
Identity = 53/136 (38.97%), Postives = 67/136 (49.26%), Query Frame = 2
Query:  224 GVP--GGMLPGPYDIG--GMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQAT-------GPSPTDRVASLSLNDN 598
            GVP  G M PG    G    P        P   G  A +LA A   QQ+ +LGE LYP +   + + A K+TGMLLEMD TE+L LLE  EAL+AKV EA+ V     + + T        P P +     S  +N
Sbjct:  617 GVPVQGQMRPGQGGRGQNAQPAAGRGEEAPA-AGLTAQSLAAAPAPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNTELLSLLEDDEALRAKVDEALSVYDEYMKNKGTEGEAAGEAPKPKEAATEESTEEN 751          
BLAST of EY710929 vs. ExPASy Swiss-Prot
Match: PABP_ASPOR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus oryzae GN=pab1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.423e-13
Identity = 45/103 (43.69%), Postives = 63/103 (61.17%), Query Frame = 2
Query:  311 GALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM----EVLRNV-AQQQATGPS--PTDRVASLSLNDN 598
            G  A AL+ A P QQ+ +LGE LYP +   + + A K+TGMLLEM+ TE+L LLE  EAL+AKV EA+    E ++N   + +ATG +  P +     S  +N
Sbjct:  661 GLTAQALSAAPPPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMENTELLSLLEDEEALRAKVDEALNVYDEYMKNKGGESEATGEAAKPKEAAKETSTEEN 763          
BLAST of EY710929 vs. ExPASy Swiss-Prot
Match: PAP1L_HUMAN (Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.515e-12
Identity = 38/83 (45.78%), Postives = 55/83 (66.27%), Query Frame = 2
Query:  278 RDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 526
            ++ A   P Q    AS LA A   +Q+ ++GE LYPL+  +    A K+TGMLLE+D +E+L +LESPE+L AK+ EA+ VL+
Sbjct:  519 QEPAVHIPGQEPLTASMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLHAKIDEAVAVLQ 601          
BLAST of EY710929 vs. ExPASy Swiss-Prot
Match: PABP_PHANO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Phaeosphaeria nodorum GN=PAB1 PE=3 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 5.996e-12
Identity = 42/99 (42.42%), Postives = 59/99 (59.60%), Query Frame = 2
Query:  224 GVPGGMLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 520
            G PGG   G   + G P       +P   G   S L+ A+P QQ+ +LGE LYP + +++ + A K+TGMLLEMD +E+++L     AL+AKV EAM V
Sbjct:  626 GAPGGR--GQPPMPGFP----QGGRPGGPGVDMSVLSAAAPGQQKQMLGEALYPKIHEMQPELAGKITGMLLEMDNSELINLTADESALRAKVDEAMSV 718          
BLAST of EY710929 vs. ExPASy Swiss-Prot
Match: PABP_MAGGR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Magnaporthe grisea GN=PAB1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.744e-11
Identity = 61/165 (36.97%), Postives = 81/165 (49.09%), Query Frame = 2
Query:  116 MQQAQQPIPLMQPRMLPRGRIYRYPPGCNIPDVPVAGVPGGM-LPG----PYDIGGMPFRDAAFSQPMQTGALASALANASPE--------------QQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATG 553
            MQQ QQ   L   R  P GR      G     VPV G+PGG  LPG        G    R AA  +    GA A A    +PE              QQ+ +LGE ++P +  +  + A K+TGMLLEMD TE++ L+E+  AL++KV EA+ V  +  +QQ  G
Sbjct:  590 MQQIQQSA-LAGGRGGPAGR------GPMQGGVPVPGMPGGAGLPGFPPNARQQGPGAGRGAAAGRA-PAGAPAGARGAGAPEGLQGQLAAVADNPGQQKQILGEAIFPKIQAIHPELAGKITGMLLEMDNTELVALVENDGALRSKVDEALAVYDDYVRQQGDG 746          
BLAST of EY710929 vs. ExPASy Swiss-Prot
Match: PABP_PICST (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia stipitis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.976e-11
Identity = 53/166 (31.93%), Postives = 75/166 (45.18%), Query Frame = 2
Query:  113 PMQQAQQPIPLMQPRML-----PRGRIYRYP-PGCNIPDVPVAGVPGGMLPGPY-DIGGMPFRDAAFSQP-------MQTGALASALANASPEQQRTLLGENLYPLV----DQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGP 556
            P  +   P P   P+M+     P G   ++P PG N   VPV G+P    P  Y D  G   R      P        Q   LA+ +A+A P+QQ+ +LGE LYP +       E + A K+TGM+L++D  E+L LLE  E       +A+         +A  P
Sbjct:  460 PNGRGNAPFPGPNPQMIMRRGQPFGGPEQWPRPGPNGQPVPVYGIP----PQAYSDFNGQNIRQQRGYYPNRNQNKGRQQRDLAAIIASAPPDQQKRILGEELYPKIVATGKAQEPEAAGKITGMMLDLDNQEILALLEDDELFTNHFEDALTAFEEYKNSEAAAP 621          
BLAST of EY710929 vs. ExPASy Swiss-Prot
Match: PABP_NEUCR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neurospora crassa GN=pab-1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.886e-11
Identity = 52/161 (32.30%), Postives = 72/161 (44.72%), Query Frame = 2
Query:  110 GPMQQAQQPIPLMQPRMLPRG-RIYRYPPGCNIPDVPVAGVPGG----MLPGPYDIGGMPFRDAAFSQPMQTGALASALANASPEQQRTLLGENLYPLVDQLEHDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQATGPSPTDRVA 577
            GP  +  Q IP   P+ L  G  +  YPP     +    G P G    M  G    G  P   A       +   A       P+ Q+ ++GENL+P +  ++   A K+TGMLLEMD  E+++L E   AL  KV EA+ V     + Q  G  PT + A
Sbjct:  590 GPAGRGPQGIPAGIPQGLQGGPAVPGYPPAGRPQNGGGRGTPRGNANFMAAGR---GASPIPGAPADLSAGSFLQAQLATTQDPQAQKQIIGENLFPKIQAIQPALAGKITGMLLEMDNAELINLFEDDNALNVKVQEALAVYDEYLKTQ--GQQPTQQPA 745          
The following BLAST results are available for this feature:
BLAST of EY710929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
EPABB_XENLA1.864e-1347.56Embryonic polyadenylate-binding protein B OS=Xenop... [more]
PABP_NEOFI2.434e-1346.59Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASPFU4.152e-1343.33Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASPTN5.423e-1338.97Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASPOR5.423e-1343.69Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PAP1L_HUMAN3.515e-1245.78Polyadenylate-binding protein 1-like OS=Homo sapie... [more]
PABP_PHANO5.996e-1242.42Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_MAGGR1.744e-1136.97Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_PICST2.976e-1131.93Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_NEUCR3.886e-1132.30Polyadenylate-binding protein, cytoplasmic and nuc... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-001-G07-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710929 ID=EY710929; Name=EY710929; organism=Citrus sinensis; type=EST; length=834bp
CCACGCGTCCGAGCAGCAGCTGGTTCCGGGAATGAGGCCAAACTATTTTG
TTCCAATGGTCCAGCCAGGTCAGCAGAACCAGCGCCCAGGAGGTAGACGT
TCTGGAACTGGCCCCATGCAACAAGCACAACAACCAATTCCACTTATGCA
GCCGCGGATGCTTCCAAGAGGTCGCATCTACCGATACCCTCCTGGTTGCA
ACATACCAGATGTTCCCGTTGCTGGTGTTCCTGGAGGCATGCTTCCTGGT
CCTTACGACATTGGTGGAATGCCGTTCAGAGATGCTGCATTTTCACAGCC
TATGCAAACAGGGGCTTTGGCATCTGCCCTTGCTAATGCGTCTCCTGAGC
AACAGAGGACGTTACTGGGAGAAAATCTATACCCACTTGTAGATCAATTG
GAGCATGATAACGCTGCAAAAGTAACAGGCATGCTTTTAGAGATGGACCA
GACTGAAGTTTTGCACTTGCTAGAGTCGCCAGAAGCCTTGAAAGCGAAAG
TCGCAGAGGCAATGGAAGTATTAAGGAATGTAGCTCAGCAGCAGGCCACC
GGCCCAAGCCCAACTGATCGGGTGGCCTCACTGTCGCTGAATGACAACAT
TGTTTCTTGAGTTTTAGGCACCCATCTATGCTAGTAATATAGCCTAAGCA
CTTAATTTTGGAATAAAATTTGGTGTGGGGTTGAGTCTATTTGCGATAGT
TTGCTGGAGAAAGTCGGGGGAATACTTTGGTACTGAACTTTCTTTGTAGC
GCGACCATATAAGATCAGCGCAATTTTGCCCAAGTTATGCCAGAATTAAT
TAAATTTGCTTGATCATCAAAAAAAAAAAAAAGG
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