EY710888

Overview
NameEY710888
Unique NameEY710888
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length933
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710888 vs. ExPASy Swiss-Prot
Match: IDI1_BOVIN (Isopentenyl-diphosphate Delta-isomerase 1 OS=Bos taurus GN=IDI1 PE=2 SV=2)

HSP 1 Score: 225.713 bits (574), Expect = 2.935e-58
Identity = 111/192 (57.81%), Postives = 143/192 (74.48%), Query Frame = 3
Query:   24 ENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWVRLGVDNFLFKWWDHLEK 599
            ENDR +G E K NCHL E IE   LLHRAFSVFLFN++ +LLLQQRS  K+TFP  +TNTCCSHPL   SEL E +A+GVR AAQR+L  ELGI  E+VP +E   L RI YKA SD  WGEHE+DY+L + ++V++NP+P+E+  Y YV +E+L+EL+ KA  GE  +K++PW ++  D FLFKWWD+L +
Sbjct:   26 ENDRRIGAETKKNCHLNENIER-GLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPSELEENDAIGVRRAAQRRLKAELGIPMEEVPPEEINYLTRIHYKAQSDSIWGEHEIDYILLVKKNVTLNPDPNEIKSYCYVTKEELEELIGKAAHGE--IKITPWFQIIADTFLFKWWDNLNR 214          
BLAST of EY710888 vs. ExPASy Swiss-Prot
Match: IDI1_MESAU (Isopentenyl-diphosphate Delta-isomerase 1 OS=Mesocricetus auratus GN=IDI1 PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 6.537e-58
Identity = 109/190 (57.37%), Postives = 145/190 (76.32%), Query Frame = 3
Query:   24 ENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWVRLGVDNFLFKWWDHL 593
            END  +G + K NCHL E I+   LLHRAFSVFLFN++ +LLLQQRS  K+TFP  +TN+CCSHPL    EL E +A+GV+ AAQR+L  ELGI  E+V  +E   L RI YKA SDG WGEHE+DY+LF+ ++V++NP+P+E+  Y YV++E+LKEL++KA +GE  +KL+PW ++ VD FLFKWWD+L
Sbjct:   26 ENDNKIGADTKKNCHLNENIDK-GLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNSCCSHPLSNPGELEENDAIGVKRAAQRRLKAELGIPLEEVDPNEMHYLTRIYYKAQSDGIWGEHEIDYILFLKKNVTLNPDPNEIKSYCYVSKEELKELVKKAASGE--VKLTPWFKIIVDTFLFKWWDNL 212          
BLAST of EY710888 vs. ExPASy Swiss-Prot
Match: IDI1_MOUSE (Isopentenyl-diphosphate Delta-isomerase 1 OS=Mus musculus GN=Idi1 PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 2.484e-57
Identity = 106/190 (55.79%), Postives = 145/190 (76.32%), Query Frame = 3
Query:   24 ENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWVRLGVDNFLFKWWDHL 593
            END  +G + K NCHL E I+   LLHRAFSVFLFN++ +LLLQQRS  K+TFP  +TN+CCSHPL    EL E NA+GV+ AA+R+L  ELGI  E+V ++E   L RI YKA SDG WGEHE+DY+LF+ ++V++NP+P+E+  Y YV++E+++E+L+KA +GE  +KL+PW ++  D FLFKWWD+L
Sbjct:   26 ENDNKIGADTKKNCHLNENIDK-GLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNSCCSHPLSNPGELEENNAIGVKRAAKRRLKAELGIPLEEVDLNEMDYLTRIYYKAQSDGIWGEHEVDYILFLRKNVTLNPDPNEIKSYCYVSKEEVREILKKAASGE--IKLTPWFKIIADTFLFKWWDNL 212          
BLAST of EY710888 vs. ExPASy Swiss-Prot
Match: IDI1_RAT (Isopentenyl-diphosphate Delta-isomerase 1 OS=Rattus norvegicus GN=Idi1 PE=2 SV=2)

HSP 1 Score: 221.09 bits (562), Expect = 7.228e-57
Identity = 106/190 (55.79%), Postives = 143/190 (75.26%), Query Frame = 3
Query:   24 ENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWVRLGVDNFLFKWWDHL 593
            END  +G + K NCHL E I+   L+HRAFSVFLFN++ +LLLQQRS  K+TFP  +TN+CCSHPL    EL E +A+GV+ AAQR+L  ELGI  E+V ++E   L RI YKA SDG WGEHE+DY+LF+ ++V++NP+P+E+  Y YV++E+LKE+L+K   GE  +KL+PW ++  D FLFKWWD+L
Sbjct:   26 ENDNKIGADTKKNCHLNENIDK-GLIHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNSCCSHPLNNPGELEENDAMGVKRAAQRRLKAELGIPLEEVDLNEMNYLTRIYYKAQSDGIWGEHEIDYILFLRKNVTLNPDPNEIKSYCYVSKEELKEILKKEARGE--IKLTPWFKIIADAFLFKWWDNL 212          
BLAST of EY710888 vs. ExPASy Swiss-Prot
Match: IDI2_HUMAN (Isopentenyl-diphosphate Delta-isomerase 2 OS=Homo sapiens GN=IDI2 PE=1 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 2.108e-48
Identity = 96/194 (49.48%), Postives = 135/194 (69.59%), Query Frame = 3
Query:   24 ENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWVRLGVDNFLFKWWDHLEKGT 605
            END+V+G + K NCHL E IE   LLHRAFSV LFN+K  +L+QQRS TKVTFP  +T++C SHPLY  +EL E++A+GVR AAQR+L  ELGI  E +  ++   +    +KA SD  WGEHE+ YLL + ++V++NP+P E     Y+++E+L ELL +   GE  +K++PW+R   + FL++WW HL+  T
Sbjct:   26 ENDKVIGADTKRNCHLNENIEK-GLLHRAFSVVLFNTKNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDAIGVRRAAQRRLQAELGIPGEQISPEDIVFMTIYHHKAKSDRIWGEHEICYLLLVRKNVTLNPDPSETKSILYLSQEELWELLEREARGE--VKVTPWLRTIAERFLYRWWPHLDDVT 216          
BLAST of EY710888 vs. ExPASy Swiss-Prot
Match: IDI1_SCHPO (Isopentenyl-diphosphate Delta-isomerase OS=Schizosaccharomyces pombe GN=idi1 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 5.192e-47
Identity = 100/198 (50.51%), Postives = 126/198 (63.64%), Query Frame = 3
Query:   24 ENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESE---LIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWVRLGVDNFLFKWW---DHLEK 599
            END  + +  K  CHLME I    LLHRAFS+F+F+ +  LLLQQR+  K+TFP +WTNTCCSHPL    E    + E   GV+NAAQRKL  ELGI A+ +P D+F  L RI Y APS G WGEHE+DY+LF    V ++ NP+EV  YKYV  E+LKE+      G      +PW +L  ++F+FKWW   DH  K
Sbjct:   27 ENDVPLRYGTKKECHLMENINK-GLLHRAFSMFIFDEQNRLLLQQRAEEKITFPSLWTNTCCSHPLDVAGERGNTLPEAVEGVKNAAQRKLFHELGIQAKYIPKDKFQFLTRIHYLAPSTGAWGEHEIDYILFFKGKVELDINPNEVQAYKYVTMEELKEMFSDPQYG-----FTPWFKLICEHFMFKWWQDVDHASK 218          
BLAST of EY710888 vs. ExPASy Swiss-Prot
Match: IDI1_PHARH (Isopentenyl-diphosphate Delta-isomerase OS=Phaffia rhodozyma GN=IDI PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 6.347e-45
Identity = 100/206 (48.54%), Postives = 127/206 (61.65%), Query Frame = 3
Query:   27 NDRVVGHENKYNCHLMEKIES-LNLLHRAFSVFLFN-SKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWVRLGVDNFLFKWWDHL-----EKGTL-TKSL 620
            +D   G  +K  CHLM  I +  +LLHRAFSVFLF  S   LLLQ+R+  K+TFP +WTNTCCSHPL  + E+ EEN +GVR AA RKL  ELG+     P D FT L RI Y APSDG WGEHE+DY+LF         NP+EV++ +YV + +L+ +       +E    +PW +L   +FLF WWD L     EKG +  KSL
Sbjct:   40 DDVAYGEASKKTCHLMSNINAPKDLLHRAFSVFLFRPSDGALLLQRRADEKITFPGMWTNTCCSHPLSIKGEVKEENQIGVRRAASRKLEHELGVPTSSTPPDSFTYLTRIHYLAPSDGLWGEHEIDYILFSTTPTEHTGNPNEVSDTRYVTKPELQAMFE-----DESNSFTPWFKLIARDFLFGWWDQLLARRNEKGEVDAKSL 240          
BLAST of EY710888 vs. ExPASy Swiss-Prot
Match: IDI_DICDI (Isopentenyl-diphosphate Delta-isomerase OS=Dictyostelium discoideum GN=ipi PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.667e-43
Identity = 93/193 (48.19%), Postives = 136/193 (70.47%), Query Frame = 3
Query:   27 NDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLY-RESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPS--DGKWGEHELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWVRLGVDNFLFKWWDHL 593
            +D+ +   +K   HLM  I +  LLHRAFS+FLFN + +LLLQQR+  K+TFP  WTNT CSHPL+   SEL+EENA GV+ AA+RKL  ELG+  + V +D+FT + +I YK+ S  D +WGEHE+D++L + +D +++N  P+EV +YKYV++E+L +L +  D G+  +K++PW RL   N L  WW++L
Sbjct:   34 DDKPIRPGSKKETHLMVNINN-GLLHRAFSIFLFNGEGKLLLQQRALEKITFPGYWTNTVCSHPLWIVGSELVEENAQGVKIAAKRKLNHELGVPLDQVNIDDFTFMTKIHYKSESKEDPQWGEHEIDHILIMQKDGITINAEPNEVMDYKYVSQEELDQLFKDEDEGK--VKVTPWFRLIALNHLKPWWNNL 223          
BLAST of EY710888 vs. ExPASy Swiss-Prot
Match: IDI1_YEAST (Isopentenyl-diphosphate Delta-isomerase OS=Saccharomyces cerevisiae GN=IDI1 PE=1 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 9.484e-41
Identity = 90/200 (45.00%), Postives = 124/200 (62.00%), Query Frame = 3
Query:   27 NDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESEL-----IEENALGVRNAAQRKLLDELGICAEDVPV-DEFTPLGRILYKAPSDGKWGEHELDYLLF----IVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWVRLGVDNFLFKWWDHLE 596
            +D  +G   K  CHLME IE   LLHRAFSVF+FN + ELLLQQR+  K+TFP +WTNTCCSHPL  + EL     +++   G   AA RKL  ELGI  ++     +F  L RI Y APS+  WGEHE+DY+LF       +++VNPN +EV ++K+V+   LK +       +   K +PW ++  +N+LF WW+ L+
Sbjct:   80 DDNAIGAGTKKVCHLMENIEK-GLLHRAFSVFIFNEQGELLLQQRATEKITFPDLWTNTCCSHPLCIDDELGLKGKLDDKIKGAITAAVRKLDHELGIPEDETKTRGKFHFLNRIHYMAPSNEPWGEHEIDYILFYKINAKENLTVNPNVNEVRDFKWVSPNDLKTMF-----ADPSYKFTPWFKIICENYLFNWWEQLD 273          
BLAST of EY710888 vs. ExPASy Swiss-Prot
Match: IDI_ERWCT (Isopentenyl-diphosphate Delta-isomerase OS=Erwinia carotovora subsp. atroseptica GN=idi PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 5.064e-18
Identity = 57/158 (36.08%), Postives = 84/158 (53.16%), Query Frame = 3
Query:   24 ENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGI-CAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKE 494
            END+  G   K   H+  +      LHRA +V++FNS+ +LLLQQR+  K     +W+NTCCSHP   E  L          AA R+L +E+G+ CA        TP+  + Y+   D    EHEL ++ F V D     NPDEV+ Y+Y + +++ +
Sbjct:   11 ENDKPTGVMEKQEAHVKGE------LHRAITVYIFNSRQQLLLQQRAEEKYHSGGLWSNTCCSHPAPGEETL---------QAAHRRLYEEMGLRCA-------LTPMFTLTYRLQLDNGLIEHELGHVYFGVTDDVPQINPDEVSSYEYQSIDEITQ 146          
The following BLAST results are available for this feature:
BLAST of EY710888 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
IDI1_BOVIN2.935e-5857.81Isopentenyl-diphosphate Delta-isomerase 1 OS=Bos t... [more]
IDI1_MESAU6.537e-5857.37Isopentenyl-diphosphate Delta-isomerase 1 OS=Mesoc... [more]
IDI1_MOUSE2.484e-5755.79Isopentenyl-diphosphate Delta-isomerase 1 OS=Mus m... [more]
IDI1_RAT7.228e-5755.79Isopentenyl-diphosphate Delta-isomerase 1 OS=Rattu... [more]
IDI2_HUMAN2.108e-4849.48Isopentenyl-diphosphate Delta-isomerase 2 OS=Homo ... [more]
IDI1_SCHPO5.192e-4750.51Isopentenyl-diphosphate Delta-isomerase OS=Schizos... [more]
IDI1_PHARH6.347e-4548.54Isopentenyl-diphosphate Delta-isomerase OS=Phaffia... [more]
IDI_DICDI2.667e-4348.19Isopentenyl-diphosphate Delta-isomerase OS=Dictyos... [more]
IDI1_YEAST9.484e-4145.00Isopentenyl-diphosphate Delta-isomerase OS=Sacchar... [more]
IDI_ERWCT5.064e-1836.08Isopentenyl-diphosphate Delta-isomerase OS=Erwinia... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-001-D02-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710888 ID=EY710888; Name=EY710888; organism=Citrus sinensis; type=EST; length=933bp
CCACGCGTCCGCCCACGCGTCCGGAGAATGATCGCGTTGTTGGTCATGAA
AACAAATACAACTGTCACTTGATGGAAAAGATAGAGTCTTTGAATTTGCT
ACACAGAGCCTTCAGCGTATTTTTGTTTAACTCAAAATATGAGCTACTCC
TTCAGCAACGCTCTGGAACCAAAGTTACCTTCCCTCTTGTGTGGACTAAC
ACCTGCTGCAGCCATCCTCTGTACCGTGAATCTGAGCTTATTGAGGAGAA
CGCTCTTGGGGTGAGGAATGCTGCACAAAGAAAGCTTTTGGATGAGCTGG
GCATTTGTGCTGAAGATGTGCCAGTTGATGAGTTCACTCCACTGGGTCGC
ATTCTGTACAAGGCCCCTTCTGATGGCAAGTGGGGGGAGCATGAACTTGA
CTACTTGCTTTTCATTGTCCGAGATGTTAGTGTTAACCCAAATCCTGATG
AAGTAGCCGAGTATAAATATGTCAACCGGGAACAGTTAAAAGAGCTTTTG
AGGAAAGCAGATGCTGGAGAAGAAGGTTTGAAGCTGTCTCCTTGGGTCAG
ACTGGGTGTGGACAATTTCTTGTTCAAGTGGTGGGATCACCTCGAAAAAG
GTACCTTAACGAAGTCATTGACATGAAGACCATTTCACAAGTTGACTTAA
TAAAAGCGCAGGCCCTTTGAACACAGTATTTTGTGGGCCGGAACCTGTAT
TCCAATAAGTTTGGGCATTTGAAAGTTCTTCAGAACATAAAGGGTACCCA
GTATCTTCTCACGGGTTCTTTAATCCAATAATTTGGAATAGGGAAAGTTC
TACACAAATTACCTTTTGGTGGTGACGTACCTAACCTTTCAAAGGGGCGG
CTTTTGGAAATTTTATTGGAAAGTTGGAATTGAACATACATAGGGTTAAA
AAAAAATAAAATCGGTTTCTCAATAAAAAAAAA
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