EY710888

Overview
NameEY710888
Unique NameEY710888
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length933
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710888 vs. ExPASy Swiss-Prot
Match: IDI_NOCFA (Isopentenyl-diphosphate Delta-isomerase OS=Nocardia farcinica GN=idi PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.282e-17
Identity = 59/164 (35.98%), Postives = 83/164 (50.61%), Query Frame = 3
Query:   63 CHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWG--EHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWV 548
            C + E       LHRAFSV LF++   +LLQQR+  K  FPL+W NTCC HP   ES         V  AA  +L +ELG+ A        T +G   Y+A +D   G  EHE D++L    D + +P+P EVA  ++V   ++     +A    E    +PW+
Sbjct:   16 CPVAEAHRDPGKLHRAFSVLLFDTAGRVLLQQRAAVKTRFPLLWANTCCGHPAPGES---------VEAAAATRLAEELGVAA------GLTEVGVFRYRA-ADTATGRVEHEWDHVLIGTLDTTPHPDPAEVANLRWVRPAEV-----RAKLAAEPAAYTPWL 158          
BLAST of EY710888 vs. ExPASy Swiss-Prot
Match: IDI_SERP5 (Isopentenyl-diphosphate Delta-isomerase OS=Serratia proteamaculans (strain 568) GN=idi PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.312e-17
Identity = 55/156 (35.26%), Postives = 81/156 (51.92%), Query Frame = 3
Query:   27 NDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKE 494
            +D  +G ++K   H         LLHRAFS+F+F+S+  LLLQQR+ +K     +WTN+CC HP + ES L          AAQR+L +E+G  AE   V  FT      Y+A   G   EHE D++   + D      P+E   + + + +QL +
Sbjct:   11 DDNAIGSQSKTRVHQQ------GLLHRAFSIFIFDSQGRLLLQQRAFSKYHSAGLWTNSCCGHPRWGESTLA---------AAQRRLQEEMGFSAELQQVSSFT------YQAAVPGDLIEHEFDHIYVGLFDGKPQGAPEEAHSWSWTDIQQLTD 145          
BLAST of EY710888 vs. ExPASy Swiss-Prot
Match: IDI1_AZOSE (Isopentenyl-diphosphate Delta-isomerase 1 OS=Azoarcus sp. (strain EbN1) GN=idi1 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.128e-16
Identity = 62/184 (33.70%), Postives = 88/184 (47.83%), Query Frame = 3
Query:   24 ENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGI-CAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWVRLGVDNFL 572
            END  +G E K   H          LHRA S+F+F+S   LLLQ+R+ +K     +W+NTCCSHP  RE             AA+R+L +E+GI C  DV           +Y+A       E+E D++ F   D    PNPDE  ++K+V+   L     +AD  E     S W+   +D  +
Sbjct:   10 ENDTEIGVEGKMIAHRSGS------LHRAISIFIFDSADRLLLQKRAASKYHSAGLWSNTCCSHPRPREE---------CARAARRRLREEMGIACELDVKFG-------FVYRAVLTNHLIENEFDHVFFGRHDGDPVPNPDEAEDWKWVDLAWL-----RADLNERPHAYSFWLEACIDRVI 166          
BLAST of EY710888 vs. ExPASy Swiss-Prot
Match: IDI2_PHOLL (Isopentenyl-diphosphate Delta-isomerase 2 OS=Photorhabdus luminescens subsp. laumondii GN=idi2 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.939e-15
Identity = 54/155 (34.84%), Postives = 81/155 (52.26%), Query Frame = 3
Query:   45 HENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKA 509
            H+N         I    +LHRAFS+F+F++K  LLLQ+R+ TK     +WTN+CC HP  R  E +E        AA R+L +E+G    D P+ +   +   +Y A       E+E D++     D     N DEV++YK+VN  +L+ L+  A
Sbjct:   11 HDNPIGSAGKADIHQKGMLHRAFSIFVFDNKGNLLLQKRAATKYHSAGLWTNSCCGHP--RVGEALEA-------AAHRRLGEEMGF---DCPLKK---VSSFIYHAILPNNLIEYEYDHVFIGRFDKEPIINLDEVSDYKWVNLLKLRALINNA 150          
BLAST of EY710888 vs. ExPASy Swiss-Prot
Match: IDI1_PHOLL (Isopentenyl-diphosphate Delta-isomerase 1 OS=Photorhabdus luminescens subsp. laumondii GN=idi1 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.167e-14
Identity = 54/159 (33.96%), Postives = 83/159 (52.20%), Query Frame = 3
Query:   24 ENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELL 500
            END  VG  NK + HL     + + LHRAFS F+ NSK E+ +QQR+ +K+ +P  W+N+ CSHP   E          + +A  R+  +ELGI   + P  +F  L +  YK        EHEL ++  +  D     NP EV+   ++N + ++E +
Sbjct:    9 ENDNRVGCINKIDAHL-----NGDHLHRAFSCFIINSKNEVYIQQRAQSKLLWPGYWSNSYCSHPRPDEE---------ISHAVMRRAEEELGIVINEEP--KF--LYKFQYKEKYKDVGYEHELCHVFVVFTDTPPTENPKEVSAGFFINIKDVQEYI 149          
BLAST of EY710888 vs. ExPASy Swiss-Prot
Match: IDI_VIBFM (Isopentenyl-diphosphate Delta-isomerase OS=Vibrio fischeri (strain MJ11) GN=idi PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.883e-14
Identity = 54/150 (36.00%), Postives = 80/150 (53.33%), Query Frame = 3
Query:   72 MEKIES--LNLLHRAFSVFLFNSK---YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFI-VRDVSVNPNPDEVAEYKYVNREQLKELLR 503
            MEK+E+    LLH AFSV L+       E LLQ+R+  K      W+NTCCSHP   E+         V  A  R+L +E+GI    V  ++F  LG  +Y+A  +    EHE DY+L     DVS   NP+EV++ ++ +   +++ L+
Sbjct:   18 MEKLEAHEKGLLHLAFSVLLYRETDLGKEFLLQKRAECKYHSKNKWSNTCCSHPRVNEN---------VEAAGTRRLNEEIGITG--VLPEQFVNLGWFIYQAELENGLSEHEQDYILIANTPDVSFILNPEEVSDIQWWSEADIEKELK 156          
BLAST of EY710888 vs. ExPASy Swiss-Prot
Match: IDI_VIBF1 (Isopentenyl-diphosphate Delta-isomerase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=idi PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.202e-13
Identity = 53/150 (35.33%), Postives = 80/150 (53.33%), Query Frame = 3
Query:   72 MEKIES--LNLLHRAFSVFLFNSK---YELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFI-VRDVSVNPNPDEVAEYKYVNREQLKELLR 503
            MEK+E+    LLH AFSV L+       E LLQ+R+  K      W+NTCCSHP   E+         V  A  R+L +E+GI    V  ++F  LG  +Y+A  +    EHE DY+L     DVS   NP+EV++ ++ +   +++ ++
Sbjct:   18 MEKLEAHEKGLLHLAFSVLLYRETDLGKEFLLQKRAECKYHSKNKWSNTCCSHPRVNEN---------VEVAGTRRLNEEIGITG--VLPEQFVNLGWFIYQAELENGLSEHEQDYILIANTPDVSFILNPEEVSDIQWWSEADIEKEMK 156          
BLAST of EY710888 vs. ExPASy Swiss-Prot
Match: IDI2_AZOSE (Isopentenyl-diphosphate Delta-isomerase 2 OS=Azoarcus sp. (strain EbN1) GN=idi2 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.875e-13
Identity = 52/161 (32.30%), Postives = 77/161 (47.83%), Query Frame = 3
Query:   24 ENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRK 506
            E+D  VG   K   H          LHRA S+F+F+S   L+LQ+R+  K     +W+NTCCSHP   E            +AA+R+L +E+G+  E      F      +Y+        EHE D++ F   D     NPDE  ++K+V+  +L   +RK
Sbjct:   10 EHDNKVGFAGKMAAH------QRGALHRAISIFVFDSHSRLMLQRRAAGKYHSGGLWSNTCCSHPRPNEES---------ADAARRRLREEMGVDCELKKAFSF------VYRTKFGSGLIEHEFDHVFFGNHDGRPVLNPDEADDWKWVDLTELTVDVRK 149          
BLAST of EY710888 vs. ExPASy Swiss-Prot
Match: IDI_HALHL (Isopentenyl-diphosphate Delta-isomerase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=idi PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.756e-13
Identity = 60/180 (33.33%), Postives = 84/180 (46.67%), Query Frame = 3
Query:   21 PENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVN---PNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWVR 551
            PE  RV G E K   H          LH AF VF+FN + ELLLQ+R+ +K  F  +W+NTCC HP   E         GV  AA+R+L +E G      PV +FT      Y A  D   G  E +Y   ++     +   P+P E+  +++        L  +AD  +  L+ +PW R
Sbjct:    9 PEGQRV-GTEEKIRAHA-----DGGTLHLAFCVFVFNPRGELLLQRRADSKYHFSGLWSNTCCGHPRPGE---------GVTEAAERRLGEEFGFVTRLHPVAQFT------YHA-EDHHTGLAEYEYAHVLIGRAPTDQPAPDPLEIGAWEWA-----APLRIQADTQQYPLRYTPWFR 161          
BLAST of EY710888 vs. ExPASy Swiss-Prot
Match: IDI_BURM1 (Isopentenyl-diphosphate Delta-isomerase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=idi PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.905e-13
Identity = 53/156 (33.97%), Postives = 81/156 (51.92%), Query Frame = 3
Query:   27 NDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKE 494
            +DR +G   K   H         LLHRAFS+F+F+S   LLLQQR+  K     +W+NTCC HP  RE+         + +A +R+L +E+G   E  PVD       ++Y+A  +    EHE  ++     D +V P+  EVA +++++   L E
Sbjct:   11 DDRPIGICEKMRAH------HEGLLHRAFSIFVFDSAGRLLLQQRALNKYHSGGLWSNTCCGHPRPREA---------LPDAVRRRLGEEMGFACELRPVD------ALVYRARFENDLIEHEFVHIHVGRFDGTVAPDFAEVAAWRWIDVPTLLE 145          
The following BLAST results are available for this feature:
BLAST of EY710888 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
IDI_NOCFA3.282e-1735.98Isopentenyl-diphosphate Delta-isomerase OS=Nocardi... [more]
IDI_SERP57.312e-1735.26Isopentenyl-diphosphate Delta-isomerase OS=Serrati... [more]
IDI1_AZOSE2.128e-1633.70Isopentenyl-diphosphate Delta-isomerase 1 OS=Azoar... [more]
IDI2_PHOLL8.939e-1534.84Isopentenyl-diphosphate Delta-isomerase 2 OS=Photo... [more]
IDI1_PHOLL1.167e-1433.96Isopentenyl-diphosphate Delta-isomerase 1 OS=Photo... [more]
IDI_VIBFM9.883e-1436.00Isopentenyl-diphosphate Delta-isomerase OS=Vibrio ... [more]
IDI_VIBF12.202e-1335.33Isopentenyl-diphosphate Delta-isomerase OS=Vibrio ... [more]
IDI2_AZOSE2.875e-1332.30Isopentenyl-diphosphate Delta-isomerase 2 OS=Azoar... [more]
IDI_HALHL3.756e-1333.33Isopentenyl-diphosphate Delta-isomerase OS=Halorho... [more]
IDI_BURM14.905e-1333.97Isopentenyl-diphosphate Delta-isomerase OS=Burkhol... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-001-D02-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710888 ID=EY710888; Name=EY710888; organism=Citrus sinensis; type=EST; length=933bp
CCACGCGTCCGCCCACGCGTCCGGAGAATGATCGCGTTGTTGGTCATGAA
AACAAATACAACTGTCACTTGATGGAAAAGATAGAGTCTTTGAATTTGCT
ACACAGAGCCTTCAGCGTATTTTTGTTTAACTCAAAATATGAGCTACTCC
TTCAGCAACGCTCTGGAACCAAAGTTACCTTCCCTCTTGTGTGGACTAAC
ACCTGCTGCAGCCATCCTCTGTACCGTGAATCTGAGCTTATTGAGGAGAA
CGCTCTTGGGGTGAGGAATGCTGCACAAAGAAAGCTTTTGGATGAGCTGG
GCATTTGTGCTGAAGATGTGCCAGTTGATGAGTTCACTCCACTGGGTCGC
ATTCTGTACAAGGCCCCTTCTGATGGCAAGTGGGGGGAGCATGAACTTGA
CTACTTGCTTTTCATTGTCCGAGATGTTAGTGTTAACCCAAATCCTGATG
AAGTAGCCGAGTATAAATATGTCAACCGGGAACAGTTAAAAGAGCTTTTG
AGGAAAGCAGATGCTGGAGAAGAAGGTTTGAAGCTGTCTCCTTGGGTCAG
ACTGGGTGTGGACAATTTCTTGTTCAAGTGGTGGGATCACCTCGAAAAAG
GTACCTTAACGAAGTCATTGACATGAAGACCATTTCACAAGTTGACTTAA
TAAAAGCGCAGGCCCTTTGAACACAGTATTTTGTGGGCCGGAACCTGTAT
TCCAATAAGTTTGGGCATTTGAAAGTTCTTCAGAACATAAAGGGTACCCA
GTATCTTCTCACGGGTTCTTTAATCCAATAATTTGGAATAGGGAAAGTTC
TACACAAATTACCTTTTGGTGGTGACGTACCTAACCTTTCAAAGGGGCGG
CTTTTGGAAATTTTATTGGAAAGTTGGAATTGAACATACATAGGGTTAAA
AAAAAATAAAATCGGTTTCTCAATAAAAAAAAA
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