EY710888

Overview
NameEY710888
Unique NameEY710888
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length933
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY710888 vs. ExPASy Swiss-Prot
Match: IDI_MYCBO (Isopentenyl-diphosphate Delta-isomerase OS=Mycobacterium bovis GN=idi PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.831e-11
Identity = 52/151 (34.44%), Postives = 77/151 (50.99%), Query Frame = 3 
Query:   99 LHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWVR 551
            LH AFS ++ +   +LL+ +R+ TK T+P VWTN+CC HPL  ES         +  A +R+L  ELG+  +   VD   P  R  Y+A       E+E+  +  +  D    PN DEV   ++++ EQ    +R   AG     +SPW R
Sbjct:   39 LHLAFSSYVSDLHDQLLITRRAATKRTWPAVWTNSCCGHPLPGES---------LPGAIRRRLAAELGLTPD--RVDLILPGFR--YRAAMADGTVENEICPVYRVQVDQQPRPNSDEVDAIRWLSWEQ---FVRDVTAGVIA-PVSPWCR 172
The following BLAST results are available for this feature:
BLAST of EY710888 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
IDI_MYCBO7.831e-1134.44Isopentenyl-diphosphate Delta-isomerase OS=Mycobac... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-001-D02-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710888 ID=EY710888; Name=EY710888; organism=Citrus sinensis; type=EST; length=933bp
CCACGCGTCCGCCCACGCGTCCGGAGAATGATCGCGTTGTTGGTCATGAA
AACAAATACAACTGTCACTTGATGGAAAAGATAGAGTCTTTGAATTTGCT
ACACAGAGCCTTCAGCGTATTTTTGTTTAACTCAAAATATGAGCTACTCC
TTCAGCAACGCTCTGGAACCAAAGTTACCTTCCCTCTTGTGTGGACTAAC
ACCTGCTGCAGCCATCCTCTGTACCGTGAATCTGAGCTTATTGAGGAGAA
CGCTCTTGGGGTGAGGAATGCTGCACAAAGAAAGCTTTTGGATGAGCTGG
GCATTTGTGCTGAAGATGTGCCAGTTGATGAGTTCACTCCACTGGGTCGC
ATTCTGTACAAGGCCCCTTCTGATGGCAAGTGGGGGGAGCATGAACTTGA
CTACTTGCTTTTCATTGTCCGAGATGTTAGTGTTAACCCAAATCCTGATG
AAGTAGCCGAGTATAAATATGTCAACCGGGAACAGTTAAAAGAGCTTTTG
AGGAAAGCAGATGCTGGAGAAGAAGGTTTGAAGCTGTCTCCTTGGGTCAG
ACTGGGTGTGGACAATTTCTTGTTCAAGTGGTGGGATCACCTCGAAAAAG
GTACCTTAACGAAGTCATTGACATGAAGACCATTTCACAAGTTGACTTAA
TAAAAGCGCAGGCCCTTTGAACACAGTATTTTGTGGGCCGGAACCTGTAT
TCCAATAAGTTTGGGCATTTGAAAGTTCTTCAGAACATAAAGGGTACCCA
GTATCTTCTCACGGGTTCTTTAATCCAATAATTTGGAATAGGGAAAGTTC
TACACAAATTACCTTTTGGTGGTGACGTACCTAACCTTTCAAAGGGGCGG
CTTTTGGAAATTTTATTGGAAAGTTGGAATTGAACATACATAGGGTTAAA
AAAAAATAAAATCGGTTTCTCAATAAAAAAAAA
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