EY710868

Overview
NameEY710868
Unique NameEY710868
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length862
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDH_MYCBO (Malate dehydrogenase OS=Mycobacterium bovis GN=mdh PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 9.933e-34
Identity = 89/226 (39.38%), Postives = 129/226 (57.08%), Query Frame = 3
Query:   57 MAKEPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPANPMH*F-*KNLRHQSLLRNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTVNTATGENLSMSLSGLCIVEWRFITT 731
            M+  P++V VTGAA QIGY+L+  +A G +LG D+P+ L +L+I PA +AL GV MEL D AFPLL GV+  +D  +   GV++A++VG  PR  GM+R D++  N +I+ A   AL   AA + +V V  NPAN        N       R   L ++   + I     +T   V+D K + IWGNHS++QYPD+    V    G+N +  ++    +E  FI T
Sbjct:    1 MSASPLKVAVTGAAGQIGYSLLFRLASGSLLGPDRPIELRLLEIEPALQALEGVVMELDDCAFPLLSGVEIGSDPQKIFDGVSLALLVGARPRGAGMERSDLLEANGAIFTAQGKALNAVAADDVRVGVTGNPANTNALIAMTNAPDIPRERFSALTRLDHNRAISQLAAKTGAAVTDIKKMTIWGNHSATQYPDLFHAEV---AGKNAAEVVNDQAWIEDEFIPT 223          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDH_AQUAR (Malate dehydrogenase OS=Aquaspirillum arcticum GN=mdh PE=1 SV=3)

HSP 1 Score: 144.05 bits (362), Expect = 9.933e-34
Identity = 92/223 (41.26%), Postives = 124/223 (55.61%), Query Frame = 3
Query:   57 MAKEPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIP--PAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPAN-------------PMH*F*KNLRHQSLLRNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTVNTATGENL 680
            MAK P+RV VTGAA QI Y+L+  IA G MLG DQPVIL +L+IP   A +AL GV ME+ D AFPLL G+ A  D + A    ++A++VG  PR  GM+RKD++  N  I+     A++  A+ N KVLVV NPAN             P   F   LR   L  N  L QI +         +T  PVS  + + +WGNHS + Y D     ++ A+ +++
Sbjct:    1 MAKTPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPANTNAYIAMKSAPSLPAKNFTAMLR---LDHNRALSQIAA---------KTGKPVSSIEKLFVWGNHSPTMYADYRYAQIDGASVKDM 211          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDH_JANMA (Malate dehydrogenase OS=Janthinobacterium sp. (strain Marseille) GN=mdh PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.297e-33
Identity = 92/216 (42.59%), Postives = 120/216 (55.56%), Query Frame = 3
Query:   57 MAKEPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPP--AAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPAN-------------PMH*F*KNLRHQSLLRNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTVN 659
            MAK P+RV VTGAA QIGY+L+  IA G +LG DQPVIL +L+I    A +AL GV ME+ D AFPLL GV A +D + A    ++A++VG  PR  GM+RKD++  N  I+     AL+  A+ N KVLVV NPAN             P   F   LR   L  N  L QI +         +   PV+  + + +WGNHS + YPD    T +
Sbjct:    1 MAKAPMRVAVTGAAGQIGYSLLFRIANGDLLGKDQPVILQLLEIADEKAQKALKGVIMEIDDCAFPLLAGVTAHSDPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKALDAVASRNVKVLVVGNPANTNAYIAMKSAPNLPAKNFTAMLR---LDHNRALSQIAA---------KISKPVTSIEKLTVWGNHSPTMYPDYRFATAD 204          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDH_ACIAC (Malate dehydrogenase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.297e-33
Identity = 93/215 (43.26%), Postives = 120/215 (55.81%), Query Frame = 3
Query:   57 MAKEPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPP--AAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPAN-------------PMH*F*KNLRHQSLLRNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTV 656
            M+K+PVRV VTGAA QIGYAL+  IA G MLG DQPVIL +L+IP   A +AL GV MEL D AFPLL G++A +D + A    + A++VG  PR  GM+R D+++ N  I+ A   AL   A+ N KVLVV NPAN             P   F   LR   L  N    QI +         +T   V + + + +WGNHS + Y D    T+
Sbjct:    1 MSKKPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEIPDEKAQKALKGVMMELEDCAFPLLAGMEAHSDPMTAFKDTDYALLVGARPRGPGMERADLLAANAQIFTAQGKALNAVASRNVKVLVVGNPANTNAYIAMKSAPDLPAKNFTAMLR---LDHNRAASQIAA---------KTGGKVGEIEKLTVWGNHSPTMYADYRFATI 203          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDH_XANC5 (Malate dehydrogenase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=mdh PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.694e-33
Identity = 97/218 (44.50%), Postives = 121/218 (55.50%), Query Frame = 3
Query:   63 KEPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIP--PAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPAN--------------PMH*F*KNLRHQSLLRNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTVNTAT 668
            K PVRV VTGAA QIGYAL+  IA G MLG DQPVIL +L++P   A  AL GV MEL D AFPLL G+  T DA  A   V+IA++VG  PR  GM+RKD++  N  I+ A  +AL   A  + KVLVV NPAN              P + F   LR   L  N  L Q+ +  G          PV+  + + +WGNHS + YPD    T + A+
Sbjct:    2 KAPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLELPIEKAQAALKGVMMELEDCAFPLLAGMVGTDDAEVAFKDVDIALLVGSRPRGPGMERKDLLLANAEIFTAQGAALNKVAKRDVKVLVVGNPANTNAYIAMKSAPDLDPKN-FTAMLR---LDHNRALSQLSAKLG---------KPVAGIEKLAVWGNHSPTMYPDYRFATADGAS 206          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDH_VARPS (Malate dehydrogenase OS=Variovorax paradoxus (strain S110) GN=mdh PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.694e-33
Identity = 95/228 (41.67%), Postives = 129/228 (56.58%), Query Frame = 3
Query:   57 MAKEPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPP--AAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPAN-------------PMH*F*KNLRHQSLLRNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTVNTATGENLSMSLS 695
            M+K+PVRV VTGAA QIGYAL+  IA G MLG DQPVIL +L+IP   A +AL GV MEL D AFPLL G++A  D + A    + A++VG  PR  GM+R ++++ N +I+ A   AL   A+ N KVLVV NPAN             P   F   LR   L  N    QI +         +T   V+D + +++WGNHS + Y D    T+    GE+++  ++
Sbjct:    1 MSKKPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEIPDEKAQKALKGVMMELDDCAFPLLAGMEAHGDPMTAFKDADYALLVGSRPRGPGMERAELLAVNGAIFTAQGKALNAVASRNVKVLVVGNPANTNAYIAMKSAPDLPRKNFTAMLR---LDHNRAASQIAA---------KTGKAVADIEKLVVWGNHSPTMYADYRFATIK---GESVAKMIN 213          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDH_BORA1 (Malate dehydrogenase OS=Bordetella avium (strain 197N) GN=mdh PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.694e-33
Identity = 95/216 (43.98%), Postives = 119/216 (55.09%), Query Frame = 3
Query:   57 MAKEPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPP--AAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPAN-------------PMH*F*KNLRHQSLLRNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTVN 659
            M+K  +RV VTGAA QIGYAL+  IA G MLG DQPVIL +L+IP   A +AL GV MEL D AFPLL+ V A  D   A    ++A++VG  PR  GM+RKD+++ N  I+ A   AL   A+ N KVLVV NPAN             P   F   LR   L  N  L Q+    G           V+  + +I+WGNHS + YPD    TV+
Sbjct:    1 MSKPAMRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEIPDEKAQKALKGVIMELEDCAFPLLQEVTAHADPKTAFKDADVALLVGARPRGPGMERKDLLTVNAQIFTAQGRALNEVASRNVKVLVVGNPANTNAYIAMKSAPDLPAKNFTAMLR---LDHNRALSQLAGKSGKA---------VAGIEKLIVWGNHSPTMYPDYRFATVD 204          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDH_XANAC (Malate dehydrogenase OS=Xanthomonas axonopodis pv. citri GN=mdh PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.213e-33
Identity = 96/218 (44.04%), Postives = 121/218 (55.50%), Query Frame = 3
Query:   63 KEPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIP--PAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPAN--------------PMH*F*KNLRHQSLLRNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTVNTAT 668
            K PVRV VTGAA QIGYAL+  IA G MLG DQPVIL +L++P   A  AL GV MEL D AFPLL G+  T DA  A   V++A++VG  PR  GM+RKD++  N  I+ A  +AL   A  + KVLVV NPAN              P + F   LR   L  N  L Q+ +  G          PV+  + + +WGNHS + YPD    T + A+
Sbjct:    2 KAPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLELPIEKAQAALKGVMMELEDCAFPLLAGMVGTDDAEVAFKDVDVALLVGSRPRGPGMERKDLLLANAEIFTAQGAALNKVAKRDVKVLVVGNPANTNAYIAMKSAPDLDPKN-FTAMLR---LDHNRALSQLSAKLG---------KPVAGIEKLAVWGNHSPTMYPDYRFATADGAS 206          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDH_POLSJ (Malate dehydrogenase OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=mdh PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.213e-33
Identity = 94/228 (41.23%), Postives = 129/228 (56.58%), Query Frame = 3
Query:   57 MAKEPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA--EALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPAN-------------PMH*F*KNLRHQSLLRNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTVNTATGENLSMSLS 695
            M+K+PVRV VTGAA QIGYAL+  IA G MLG DQPVIL +L++P     +AL GV MEL D AFPLL G++A +D + A    + A++VG  PR  GM+R ++++ N +I+ A   AL   A+ N KVLVV NPAN             P   F   LR   L  N    QI +         +T   V+D + + +WGNHS + Y D    T+N   GE+++  ++
Sbjct:    1 MSKKPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEVPVEGPQKALKGVMMELDDCAFPLLAGMEAHSDPMTAFKDADYALLVGSRPRGPGMERAELLAVNGAIFTAQGKALNAVASRNVKVLVVGNPANTNAYIAMKSAPDLPRKNFTAMLR---LDHNRAASQIAA---------KTGKAVADIEKLTVWGNHSPTMYADYRFATIN---GESVAKMIN 213          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDH_MYCPA (Malate dehydrogenase OS=Mycobacterium paratuberculosis GN=mdh PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.213e-33
Identity = 89/226 (39.38%), Postives = 126/226 (55.75%), Query Frame = 3
Query:   57 MAKEPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPANPMH*F-*KNLRHQSLLRNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTVNTATGENLSMSLSGLCIVEWRFITT 731
            M+  P++V VTGAA QIGY+L+  +A G +LG D+P+ L +L+I PA +AL GV MEL D AFPLL GV+   D  +   G N+A++VG  PR  GM+R D++  N +I+ A   AL   AA + +V V  NPAN        N       R   L ++   + I     +T   V+D K + IWGNHS++QYPD+    V    G+N +  +     +E  FI T
Sbjct:    1 MSASPLKVAVTGAAGQIGYSLLFRLASGSLLGPDRPIELRLLEIEPALKALEGVVMELDDCAFPLLSGVEIGADPNKIFDGANLALLVGARPRGPGMERSDLLEANGAIFTAQGKALNEVAADDIRVGVTGNPANTNALIAMSNAPDIPRERFSALTRLDHNRAISQLAKKTGAKVTDIKKMTIWGNHSATQYPDIFHAEVK---GKNAAEVVGDQNWIENDFIPT 223          
The following BLAST results are available for this feature:
BLAST of EY710868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 187
Match NameE-valueIdentityDescription
MDH_MYCBO9.933e-3439.38Malate dehydrogenase OS=Mycobacterium bovis GN=mdh... [more]
MDH_AQUAR9.933e-3441.26Malate dehydrogenase OS=Aquaspirillum arcticum GN=... [more]
MDH_JANMA1.297e-3342.59Malate dehydrogenase OS=Janthinobacterium sp. (str... [more]
MDH_ACIAC1.297e-3343.26Malate dehydrogenase OS=Acidovorax avenae subsp. c... [more]
MDH_XANC51.694e-3344.50Malate dehydrogenase OS=Xanthomonas campestris pv.... [more]
MDH_VARPS1.694e-3341.67Malate dehydrogenase OS=Variovorax paradoxus (stra... [more]
MDH_BORA11.694e-3343.98Malate dehydrogenase OS=Bordetella avium (strain 1... [more]
MDH_XANAC2.213e-3344.04Malate dehydrogenase OS=Xanthomonas axonopodis pv.... [more]
MDH_POLSJ2.213e-3341.23Malate dehydrogenase OS=Polaromonas sp. (strain JS... [more]
MDH_MYCPA2.213e-3339.38Malate dehydrogenase OS=Mycobacterium paratubercul... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-001-B06-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710868 ID=EY710868; Name=EY710868; organism=Citrus sinensis; type=EST; length=862bp
CCACGCGTCCGGGAAAAATCTTTTCGTTTCCTGTGATACATCTCTGATCC
GAACTAATGGCCAAGGAACCAGTTCGCGTTCTCGTCACCGGCGCCGCAAG
GCAAATTGGATATGCACTTGTCCCCATGATTGCTAGGGGAGTGATGTTGG
GTACTGACCAGCCTGTGATTCTGCACATGCTTGATATCCCACCTGCAGCA
GAGGCATTGAATGGTGTGAAGATGGAGTTGGTTGATGCTGCATTCCCTCT
TCTTAAAGGTGTTGATGCTACAACTGATGCTGTTGAGGCATGCACTGGGG
TCAATATTGCCGTTATGGTTGGTGGCTTTCCAAGAAAACAAGGAATGGAT
AGAAAAGATGTGATGTCAAAGAACGTTTCAATCTACAAGGCTCATGCTTC
TGCCCTGGAGCATCACGCAGCTCCGAACTGCAAGGTTCTAGTTGTCGCTA
ACCCTGCAAACCCAATGCATTGATTCTGAAAGAATTTGCGCCATCAATCC
CTGCTAAGAAATTACATGCTTGACCAGATTGGATCATAACAGGGCATTGG
GACAAATATCTGAGAAACTGAATGTCCAGTATCTGATGCTAAGAATGTGA
TTATTTGGGGAAATCATTCATCATCTCAGTACCCTGATGTCAACCAGTGC
ACTGTCAATACTGCCACTGGGGAAAACCTGTCCATGAGCTTGTCAGGATT
ATGCATCGTTGAATGGAGATTCATAACCACAGCCAACAACGTGGTGCTGC
ATCATCAACTCCAAAAGCTCCCAAGGGTCTGCTGCTGCAATTCCGCTTTG
ACCTACCCGGATTGGGTTCTTGAACCCTTAGGACCTGGGCCCCAGGGGGT
TACCTGATGGTC
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