EY710868

Overview
NameEY710868
Unique NameEY710868
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length862
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDH_THETH (Malate dehydrogenase OS=Thermus thermophilus GN=mdh PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.775e-33
Identity = 86/200 (43.00%), Postives = 115/200 (57.50%), Query Frame = 3
Query:   63 KEPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPANPMH*F*KNLRHQSLLRNY-MLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTVN 659
            K PVRV VTGAA QIGY+L+  IA G MLG DQPVIL +L+IP A +AL GV MEL D AFPLL G++AT D   A    + A++VG  PRK GM+R+D++  N  I+     AL   A  + KVLVV NPAN               RN+  + ++   +       +T   V   + + +WGNHSS+ +PD+    V+
Sbjct:    2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVD 201          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDH_THET8 (Malate dehydrogenase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=mdh PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.775e-33
Identity = 86/200 (43.00%), Postives = 115/200 (57.50%), Query Frame = 3
Query:   63 KEPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPANPMH*F*KNLRHQSLLRNY-MLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTVN 659
            K PVRV VTGAA QIGY+L+  IA G MLG DQPVIL +L+IP A +AL GV MEL D AFPLL G++AT D   A    + A++VG  PRK GM+R+D++  N  I+     AL   A  + KVLVV NPAN               RN+  + ++   +       +T   V   + + +WGNHSS+ +PD+    V+
Sbjct:    2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVD 201          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDH_THET2 (Malate dehydrogenase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=mdh PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.775e-33
Identity = 86/200 (43.00%), Postives = 115/200 (57.50%), Query Frame = 3
Query:   63 KEPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPANPMH*F*KNLRHQSLLRNY-MLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTVN 659
            K PVRV VTGAA QIGY+L+  IA G MLG DQPVIL +L+IP A +AL GV MEL D AFPLL G++AT D   A    + A++VG  PRK GM+R+D++  N  I+     AL   A  + KVLVV NPAN               RN+  + ++   +       +T   V   + + +WGNHSS+ +PD+    V+
Sbjct:    2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVD 201          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDH_SYNFM (Malate dehydrogenase OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=mdh PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.930e-33
Identity = 87/207 (42.03%), Postives = 118/207 (57.00%), Query Frame = 3
Query:   57 MAKEPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIP--PAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPANPMH*F*K----NLRHQSLLRNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTVN 659
            MAK+PVRV VTGAA QIGYAL+  +A G MLG DQP+IL ML++P      AL GV MEL D AFPLL  +  T D   A    + A++VG  PR  GM+RKD++ +N  I+     A+   A+ + +V+VV NPAN           +L   +      LD   +   + T    T  PV+  + +I+WGNHS + YPD+  CTV+
Sbjct:    1 MAKKPVRVTVTGAAGQIGYALLFRVASGQMLGPDQPIILQMLELPIDKVQAALKGVMMELEDCAFPLLADMIGTGDPKVAFKDSDYALLVGARPRGPGMERKDLLLENAKIFIEQGKAMNAVASRDIRVIVVGNPANTNAWIAMKSAPDLPKGNFTAMLRLDHNRAKSQLATR---TGKPVASVEKMIVWGNHSPTMYPDIRFCTVD 204          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDH_ACIAD (Malate dehydrogenase OS=Acinetobacter sp. (strain ADP1) GN=mdh PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 8.409e-33
Identity = 98/233 (42.06%), Postives = 122/233 (52.36%), Query Frame = 3
Query:   63 KEPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIP--PAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPAN-------------PMH*F*KNLRHQSLLRNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTVNTATGENLSMSLSGLCIVEW 716
            K+PVRV VTGAA QIGY+L+  IA G MLG DQPVIL +L+IP   A +AL GV MEL D AFPLL G+  T D   A    + A++VG  PR  GM+R D++  N  I+     AL   A+ + KVLVV NPAN             P   F   LR   L  N  L QI    G+          V+D + + +WGNHS + Y D    T N   GENL   ++     EW
Sbjct:    2 KQPVRVAVTGAAGQIGYSLLFRIASGEMLGKDQPVILQLLEIPVEKAQQALKGVMMELDDCAFPLLAGMIGTDDPKVAFKDADYALLVGSRPRGPGMERADLLKVNGEIFIGQGQALNEVASRDVKVLVVGNPANTNAYIAMKSAPDLPAKNFTAMLR---LDHNRALTQIAQKAGVA---------VADIEKLTVWGNHSPTMYADYRFATAN---GENLKDKIND---AEW 216          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDH_XANOR (Malate dehydrogenase OS=Xanthomonas oryzae pv. oryzae GN=mdh PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.098e-32
Identity = 88/208 (42.31%), Postives = 119/208 (57.21%), Query Frame = 3
Query:   63 KEPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIP--PAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPANPMH*F----*KNLRHQSLLRNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTVNTAT 668
            K PVRV VTGAA QIGYAL+  IA G MLG DQPVIL +L++    A  AL GV MEL D AFPLL G+  T DA  A   +++A++VG  PR  GM+RKD++ +N  I+ A  +AL   A  + KVLVV NPAN           +L  ++      LD   +   +   + +   PV   + +++WGNHS + YPD    T + A+
Sbjct:    2 KAPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLELSNEKAQAALKGVMMELEDCAFPLLAGMVGTDDAEVAFKDIDVALLVGARPRGPGMERKDLLLENAKIFTAQGAALNKVAKRDVKVLVVGNPANTNAYIAMKSAPDLNPKNFTAMLRLDHNRALSQLALKLGK---PVGGIEKLVVWGNHSPTMYPDYRFATSDGAS 206          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDH_XANOM (Malate dehydrogenase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=mdh PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.098e-32
Identity = 88/208 (42.31%), Postives = 119/208 (57.21%), Query Frame = 3
Query:   63 KEPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIP--PAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPANPMH*F----*KNLRHQSLLRNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTVNTAT 668
            K PVRV VTGAA QIGYAL+  IA G MLG DQPVIL +L++    A  AL GV MEL D AFPLL G+  T DA  A   +++A++VG  PR  GM+RKD++ +N  I+ A  +AL   A  + KVLVV NPAN           +L  ++      LD   +   +   + +   PV   + +++WGNHS + YPD    T + A+
Sbjct:    2 KAPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLELSNEKAQAALKGVMMELEDCAFPLLAGMVGTDDAEVAFKDIDVALLVGARPRGPGMERKDLLLENAKIFTAQGAALNKVAKRDVKVLVVGNPANTNAYIAMKSAPDLNPKNFTAMLRLDHNRALSQLALKLGK---PVGGIEKLVVWGNHSPTMYPDYRFATSDGAS 206          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDH_XANCP (Malate dehydrogenase OS=Xanthomonas campestris pv. campestris GN=mdh PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.098e-32
Identity = 88/208 (42.31%), Postives = 119/208 (57.21%), Query Frame = 3
Query:   63 KEPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIP--PAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPANPMH*F----*KNLRHQSLLRNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTVNTAT 668
            K PVRV VTGAA QIGYAL+  IA G MLG DQPVIL +L++    A  AL GV MEL D AFPLL G+  T DA  A   +++A++VG  PR  GM+RKD++ +N  I+ A  +AL   A  + KVLVV NPAN           +L  ++      LD   +   +   + +   PV   + +++WGNHS + YPD    T + A+
Sbjct:    2 KAPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLELSNEKAQAALKGVMMELEDCAFPLLAGMVGTDDAEVAFKDIDVALLVGARPRGPGMERKDLLLENAKIFTAQGAALNKVAKRDVKVLVVGNPANTNAYIAMKSAPDLNPKNFTAMLRLDHNRALSQLSLKLGK---PVGGIEKLVVWGNHSPTMYPDYRFATSDGAS 206          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDH_XANCB (Malate dehydrogenase OS=Xanthomonas campestris pv. campestris (strain B100) GN=mdh PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.098e-32
Identity = 88/208 (42.31%), Postives = 119/208 (57.21%), Query Frame = 3
Query:   63 KEPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIP--PAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPANPMH*F----*KNLRHQSLLRNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTVNTAT 668
            K PVRV VTGAA QIGYAL+  IA G MLG DQPVIL +L++    A  AL GV MEL D AFPLL G+  T DA  A   +++A++VG  PR  GM+RKD++ +N  I+ A  +AL   A  + KVLVV NPAN           +L  ++      LD   +   +   + +   PV   + +++WGNHS + YPD    T + A+
Sbjct:    2 KAPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLELSNEKAQAALKGVMMELEDCAFPLLAGMVGTDDAEVAFKDIDVALLVGARPRGPGMERKDLLLENAKIFTAQGAALNKVAKRDVKVLVVGNPANTNAYIAMESAPDLNPKNFTAMLRLDHNRALSQLSLKLGK---PVGGIEKLVVWGNHSPTMYPDYRFATSDGAS 206          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDH_XANC8 (Malate dehydrogenase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=mdh PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.098e-32
Identity = 88/208 (42.31%), Postives = 119/208 (57.21%), Query Frame = 3
Query:   63 KEPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIP--PAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPANPMH*F----*KNLRHQSLLRNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTVNTAT 668
            K PVRV VTGAA QIGYAL+  IA G MLG DQPVIL +L++    A  AL GV MEL D AFPLL G+  T DA  A   +++A++VG  PR  GM+RKD++ +N  I+ A  +AL   A  + KVLVV NPAN           +L  ++      LD   +   +   + +   PV   + +++WGNHS + YPD    T + A+
Sbjct:    2 KAPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLELSNEKAQAALKGVMMELEDCAFPLLAGMVGTDDAEVAFKDIDVALLVGARPRGPGMERKDLLLENAKIFTAQGAALNKVAKRDVKVLVVGNPANTNAYIAMKSAPDLNPKNFTAMLRLDHNRALSQLSLKLGK---PVGGIEKLVVWGNHSPTMYPDYRFATSDGAS 206          
The following BLAST results are available for this feature:
BLAST of EY710868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 187
Match NameE-valueIdentityDescription
MDH_THETH3.775e-3343.00Malate dehydrogenase OS=Thermus thermophilus GN=md... [more]
MDH_THET83.775e-3343.00Malate dehydrogenase OS=Thermus thermophilus (stra... [more]
MDH_THET23.775e-3343.00Malate dehydrogenase OS=Thermus thermophilus (stra... [more]
MDH_SYNFM4.930e-3342.03Malate dehydrogenase OS=Syntrophobacter fumaroxida... [more]
MDH_ACIAD8.409e-3342.06Malate dehydrogenase OS=Acinetobacter sp. (strain ... [more]
MDH_XANOR1.098e-3242.31Malate dehydrogenase OS=Xanthomonas oryzae pv. ory... [more]
MDH_XANOM1.098e-3242.31Malate dehydrogenase OS=Xanthomonas oryzae pv. ory... [more]
MDH_XANCP1.098e-3242.31Malate dehydrogenase OS=Xanthomonas campestris pv.... [more]
MDH_XANCB1.098e-3242.31Malate dehydrogenase OS=Xanthomonas campestris pv.... [more]
MDH_XANC81.098e-3242.31Malate dehydrogenase OS=Xanthomonas campestris pv.... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-702-001-B06-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710868 ID=EY710868; Name=EY710868; organism=Citrus sinensis; type=EST; length=862bp
CCACGCGTCCGGGAAAAATCTTTTCGTTTCCTGTGATACATCTCTGATCC
GAACTAATGGCCAAGGAACCAGTTCGCGTTCTCGTCACCGGCGCCGCAAG
GCAAATTGGATATGCACTTGTCCCCATGATTGCTAGGGGAGTGATGTTGG
GTACTGACCAGCCTGTGATTCTGCACATGCTTGATATCCCACCTGCAGCA
GAGGCATTGAATGGTGTGAAGATGGAGTTGGTTGATGCTGCATTCCCTCT
TCTTAAAGGTGTTGATGCTACAACTGATGCTGTTGAGGCATGCACTGGGG
TCAATATTGCCGTTATGGTTGGTGGCTTTCCAAGAAAACAAGGAATGGAT
AGAAAAGATGTGATGTCAAAGAACGTTTCAATCTACAAGGCTCATGCTTC
TGCCCTGGAGCATCACGCAGCTCCGAACTGCAAGGTTCTAGTTGTCGCTA
ACCCTGCAAACCCAATGCATTGATTCTGAAAGAATTTGCGCCATCAATCC
CTGCTAAGAAATTACATGCTTGACCAGATTGGATCATAACAGGGCATTGG
GACAAATATCTGAGAAACTGAATGTCCAGTATCTGATGCTAAGAATGTGA
TTATTTGGGGAAATCATTCATCATCTCAGTACCCTGATGTCAACCAGTGC
ACTGTCAATACTGCCACTGGGGAAAACCTGTCCATGAGCTTGTCAGGATT
ATGCATCGTTGAATGGAGATTCATAACCACAGCCAACAACGTGGTGCTGC
ATCATCAACTCCAAAAGCTCCCAAGGGTCTGCTGCTGCAATTCCGCTTTG
ACCTACCCGGATTGGGTTCTTGAACCCTTAGGACCTGGGCCCCAGGGGGT
TACCTGATGGTC
back to top