EY710868

Overview
NameEY710868
Unique NameEY710868
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length862
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDH_MAGSM (Malate dehydrogenase OS=Magnetococcus sp. (strain MC-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.176e-26
Identity = 80/228 (35.09%), Postives = 120/228 (52.63%), Query Frame = 3
Query:   66 EPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPANP---MH*F*KNLRHQSLLRNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTVNTATGENLSMSLSGLCIVEWRFITTANN 740
            +P+RV VTGAA QI Y+L+  +A G + G D+ V L +L+IP A   L GV MEL D AFP L  V+A  +  +A  G+N  +MVG  PR  GM+R D++  N  I+     AL + AA + + +VV NP N    +     ++ H+       LDQ  +   + +   +    V D  NV+IWGNHS++Q PD     +    G+ +   ++    +E  F+ T  N
Sbjct:    3 DPIRVAVTGAAGQIAYSLLVRLASGQLFGKDRKVELKLLEIPQAMGPLEGVMMELQDCAFPTLAKVEAFDNPEQAFDGINWCLMVGSRPRGPGMERSDLIKINGPIFVNQGKAL-NRAAQDVRAVVVGNPCNTNCMIAAHNSDVPHERFSAMMRLDQNRAKYLLAS---KAGAQVIDVTNVVIWGNHSNNQVPDFEFAKIG---GKPVPEVIADAAWLENAFMPTVQN 223          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDH_CORJK (Malate dehydrogenase OS=Corynebacterium jeikeium (strain K411) GN=mdh PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.536e-26
Identity = 75/199 (37.69%), Postives = 109/199 (54.77%), Query Frame = 3
Query:   72 VRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPANPMH*F*KNLRHQSLL---RNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTVN 659
            V V VTGA  QIGY+L+  IA+G + G D+ V L +L+     +A  GV +EL D AFPLL  V  TT+  E     N   +VG  PR++G +R D+++ N  I+     A+  +AA + +V+VV NPAN          H   L   R   L ++   +G+     +    V D KN+ +WGNHS+SQ+PDV + T+N
Sbjct:    9 VTVTVTGAGGQIGYSLLFRIAKGEVFG-DRVVNLRLLETEQGVQAARGVALELADCAFPLLGEVSITTELSEGFKDANAVFLVGAKPRQKGEERADLLAANGKIFGPQGKAIAEYAADDVRVIVVGNPANTNAAI--VAAHAEGLDPRRVTALTRLDHNRGLAQVADKLGVAVRDLKNMTVWGNHSASQFPDVAELTLN 204          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDH_CHLMU (Malate dehydrogenase OS=Chlamydia muridarum GN=mdh PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.006e-26
Identity = 71/205 (34.63%), Postives = 102/205 (49.76%), Query Frame = 3
Query:   57 MAKEPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPANPMH*F*KNLRHQSLLRNY----MLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTVN 659
            M  + V V VTG   QI Y  +  +A G + G D  + L + DIP    +L+GV+MEL D AFPLL+ V  TT   +A   ++ A ++G  PR  GM+R+D++ KN  I+      L   A    K+ VV NP N       N   + L +N+     LDQ      +       E P+S    V++WGNHS+ Q PD  Q  ++
Sbjct:    1 MFSQTVSVAVTGGTGQIAYCFLFALAHGDIFGPDTGIDLRIYDIPGTERSLSGVRMELDDGAFPLLQRVQVTTSLHDAFDDIDAAFLIGSVPRGPGMERRDLLKKNGEIFATQGKVLNTAAKREAKIFVVGNPVNTNCWIAMNHAPRLLRKNFHAMLRLDQNRMHSMLAH---RAEVPLSAVSQVVVWGNHSAKQVPDFTQALIH 202          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDH_CHLPN (Malate dehydrogenase OS=Chlamydia pneumoniae GN=mdh PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.469e-26
Identity = 71/203 (34.98%), Postives = 103/203 (50.74%), Query Frame = 3
Query:   63 KEPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPANP----MH*F*KNLRHQSLLRNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTVN 659
            KE VRV VTG   QI Y  +  +A G + G D+ V L + D+P    AL+GV+MEL D A+PLL  +  TT   +A  G++ A ++G  PR  GM+R D++ +N  I+    +AL   A  + K+ VV NP N            L  ++      LDQ      +       E P+ +   V+IWGNHS+ Q PD  Q  ++
Sbjct:    4 KEVVRVAVTGGKGQIAYNFLFALAHGDVFGVDRGVDLRIYDVPGTERALSGVRMELDDGAYPLLHRLRVTTSLNDAFDGIDAAFLIGAVPRGPGMERGDLLKQNGQIFSLQGAALNTAAKRDAKIFVVGNPVNTNCWIAMKHAPRLHRKNFHAMLRLDQNRMHSMLAH---RAEVPLEEVSRVVIWGNHSAKQVPDFTQARIS 203          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDH_CHLFF (Malate dehydrogenase OS=Chlamydophila felis (strain Fe/C-56) GN=mdh PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.941e-25
Identity = 67/200 (33.50%), Postives = 105/200 (52.50%), Query Frame = 3
Query:   72 VRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPANPMH*F*KNLRHQSLLRNY----MLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTVN 659
            V V VTG   QI Y+ +  +A G + G+D  + L + D+P     L+G++MEL D A+PLL+ +  TT   +A  G++ A ++G  PR  GM+R D++ +N  I+    S L   A  + K+ VV NP N       +   +   RN+     LDQ    Q +  +    + P+ +  NV+IWGNHS+ Q PD  Q  ++
Sbjct:    7 VSVAVTGGTGQIAYSFLFALAHGDVFGSDCGIDLRVYDLPGLERVLSGIRMELDDCAYPLLQSLRVTTSLEDAFDGIDAAFLIGAAPRGPGMERSDLLKRNGEIFSLQGSVLNTSAKRDAKIFVVGNPVNTNCWIAMSRAPKLNRRNFHSMLRLDQ-NRMQAMLAH--RAQVPLDEVTNVVIWGNHSAKQVPDFTQSLIS 203          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDH_CHLAB (Malate dehydrogenase OS=Chlamydophila abortus GN=mdh PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.941e-25
Identity = 67/200 (33.50%), Postives = 103/200 (51.50%), Query Frame = 3
Query:   72 VRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPANPMH*F*KNLRHQSLLRNY----MLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTVN 659
            V V VTG   QI Y+ +  +A G + G+D  + L + D+P     L+GV+MEL D A+PLL+ +  TT   +A  G++ A ++G  PR  GM+R D++ +N  I+    S L   A  + K+ VV NP N       +   +   RN+     LDQ      +       E P+ +  +V+IWGNHS+ Q PD  Q  ++
Sbjct:    9 VSVAVTGGTGQIAYSFLFALAHGDVFGSDCGIDLRIYDLPGLERVLSGVRMELDDGAYPLLQSLRVTTSLEDAFDGIDAAFLIGAAPRGPGMERSDLLKRNGEIFSLQGSVLNTSAKRDAKIFVVGNPVNTNCWIAMSQAPRLNRRNFHSMLRLDQNRMHTMLAHR---AEVPLDEVSHVVIWGNHSAKQVPDFTQALIS 205          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDH_PARUW (Malate dehydrogenase OS=Protochlamydia amoebophila (strain UWE25) GN=mdh PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.438e-24
Identity = 64/195 (32.82%), Postives = 106/195 (54.36%), Query Frame = 3
Query:   66 EPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPANPMH*F*KN----LRHQSLLRNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPD 638
            +P+++ ++G A QI Y+L+  +A G + G +Q + L +L++P A  AL GVKME+ D AFPLL  +   +D  +A   ++ A+++G   R  GM+R+D++ +N  I+     AL   A  + K+ VV NP N       N    L+ ++      LDQ  +   +     +++    D   V IWGNHS++Q PD
Sbjct:    3 QPIKIAISGGAGQIAYSLLFRLASGELFGPNQLIELQVLEVPNALSALEGVKMEIEDCAFPLLSSIKICSDPYQAFEDIDYALLIGAKSRGPGMERRDLLQENSKIFVNQGQALNAVAKSSAKIFVVGNPCNTNCLIALNNAPSLKRENFYAMTRLDQNRATFFLSQ---KSQVSTKDVSCVTIWGNHSATQVPD 194          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDH_STEMA (Malate dehydrogenase (Fragment) OS=Stenotrophomonas maltophilia GN=mdh PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.711e-23
Identity = 62/109 (56.88%), Postives = 74/109 (67.89%), Query Frame = 3
Query:   63 KEPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIP--PAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSI 383
            K PVRV VTGAA QIGYAL+  IA G MLG DQPVIL +L++P   A  AL GV MEL D AFPLL G+  T DA  A    +IA++VG  PR  GM+RKD++ +N  I
Sbjct:    2 KAPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLELPVDKAQAALKGVMMELEDCAFPLLAGMVGTDDAEVAFKDADIALLVGARPRGPGMERKDLLLENAKI 110          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDHP_SPIOL (Malate dehydrogenase [NADP], chloroplastic OS=Spinacia oleracea GN=MDH PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.722e-22
Identity = 70/202 (34.65%), Postives = 98/202 (48.51%), Query Frame = 3
Query:   63 KEPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPA---------NPMH*F*KNLRHQSLL-RNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPD 638
            K+ + + ++GAA  I   L+  +A GV+ G DQP+ L +L    +  AL GV MEL D+ +PLL+ V    D  E       A+++G  PR  GM+R D++  N  IY     AL   A+PN KV+VV NP          NP +   KN    + L  N    Q+    G+               NV IWGNHS++Q PD
Sbjct:   89 KKMITIAISGAAGTISNHLLFKLASGVVFGPDQPIALKLLGSEKSFHALEGVAMELEDSLYPLLREVSIGIDPYEVFEDAEWALLIGAKPRGPGMERADLLDINGKIYAEQGKALNAVASPNVKVIVVGNPCNTNALICLKNPPNIPAKNFHSLTRLDENRAKCQLALKAGVF---------YDKVSNVTIWGNHSTTQVPD 281          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDHP_FLABI (Malate dehydrogenase [NADP], chloroplastic OS=Flaveria bidentis PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.148e-20
Identity = 76/263 (28.90%), Postives = 119/263 (45.25%), Query Frame = 3
Query:   63 KEPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPANPMH*F-*KNLRHQSLLRNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTVNTATGENLSMSLSGLCIVEWRFITTANNVVLHHQLQKLPRVCCCNSALTYPDWVLEPLGPGPQG 848
            K+ + V V+GAA  I   L+  +A G + G DQP+ L +L    +  AL GV MEL D+ +PLL+ V    D  E       A+++G  PR  GM+R D++  N  I+     AL   A+PN KV+VV NP N       KN  +      + L ++   +       +         NV IWGNHS++Q PD     ++      +      L       + T   V+    ++K  R    ++A++  D +   + P P+G
Sbjct:  108 KKIINVAVSGAAGMISNHLLFKLASGEVFGPDQPISLKLLGSERSFAALEGVAMELEDSLYPLLRQVSIGIDPYEIFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNAVASPNVKVMVVGNPCNTNALICLKNAPNIPPKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIHGIPVTEVIRDRKWLEDEFTNMVQTRGGVL----IKKWGRSSAASTAVSIVDAIRSLVTPTPEG 366          
The following BLAST results are available for this feature:
BLAST of EY710868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 187
Match NameE-valueIdentityDescription
MDH_MAGSM1.176e-2635.09Malate dehydrogenase OS=Magnetococcus sp. (strain ... [more]
MDH_CORJK1.536e-2637.69Malate dehydrogenase OS=Corynebacterium jeikeium (... [more]
MDH_CHLMU2.006e-2634.63Malate dehydrogenase OS=Chlamydia muridarum GN=mdh... [more]
MDH_CHLPN4.469e-2634.98Malate dehydrogenase OS=Chlamydia pneumoniae GN=md... [more]
MDH_CHLFF4.941e-2533.50Malate dehydrogenase OS=Chlamydophila felis (strai... [more]
MDH_CHLAB4.941e-2533.50Malate dehydrogenase OS=Chlamydophila abortus GN=m... [more]
MDH_PARUW1.438e-2432.82Malate dehydrogenase OS=Protochlamydia amoebophila... [more]
MDH_STEMA2.711e-2356.88Malate dehydrogenase (Fragment) OS=Stenotrophomona... [more]
MDHP_SPIOL8.722e-2234.65Malate dehydrogenase [NADP], chloroplastic OS=Spin... [more]
MDHP_FLABI2.148e-2028.90Malate dehydrogenase [NADP], chloroplastic OS=Flav... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-702-001-B06-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710868 ID=EY710868; Name=EY710868; organism=Citrus sinensis; type=EST; length=862bp
CCACGCGTCCGGGAAAAATCTTTTCGTTTCCTGTGATACATCTCTGATCC
GAACTAATGGCCAAGGAACCAGTTCGCGTTCTCGTCACCGGCGCCGCAAG
GCAAATTGGATATGCACTTGTCCCCATGATTGCTAGGGGAGTGATGTTGG
GTACTGACCAGCCTGTGATTCTGCACATGCTTGATATCCCACCTGCAGCA
GAGGCATTGAATGGTGTGAAGATGGAGTTGGTTGATGCTGCATTCCCTCT
TCTTAAAGGTGTTGATGCTACAACTGATGCTGTTGAGGCATGCACTGGGG
TCAATATTGCCGTTATGGTTGGTGGCTTTCCAAGAAAACAAGGAATGGAT
AGAAAAGATGTGATGTCAAAGAACGTTTCAATCTACAAGGCTCATGCTTC
TGCCCTGGAGCATCACGCAGCTCCGAACTGCAAGGTTCTAGTTGTCGCTA
ACCCTGCAAACCCAATGCATTGATTCTGAAAGAATTTGCGCCATCAATCC
CTGCTAAGAAATTACATGCTTGACCAGATTGGATCATAACAGGGCATTGG
GACAAATATCTGAGAAACTGAATGTCCAGTATCTGATGCTAAGAATGTGA
TTATTTGGGGAAATCATTCATCATCTCAGTACCCTGATGTCAACCAGTGC
ACTGTCAATACTGCCACTGGGGAAAACCTGTCCATGAGCTTGTCAGGATT
ATGCATCGTTGAATGGAGATTCATAACCACAGCCAACAACGTGGTGCTGC
ATCATCAACTCCAAAAGCTCCCAAGGGTCTGCTGCTGCAATTCCGCTTTG
ACCTACCCGGATTGGGTTCTTGAACCCTTAGGACCTGGGCCCCAGGGGGT
TACCTGATGGTC
back to top