EY710868

Overview
NameEY710868
Unique NameEY710868
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length862
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDHP1_SORBI (Malate dehydrogenase [NADP] 1, chloroplastic OS=Sorghum bicolor PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.786e-20
Identity = 78/263 (29.66%), Postives = 120/263 (45.63%), Query Frame = 3
Query:   63 KEPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPANPMH*F-*KNLRHQSLLRNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTVNTATGENLSMSLSGLCIVEWRFITTANNVVLHHQLQKLPRVCCCNSALTYPDWVLEPLGPGPQG 848
            K+ V + V+GAA  I   L+  +A G + G DQP+ L +L    + +AL GV MEL D+ +PLL+ V    D  E    V+ A+++G  PR  GM+R  ++  N  I+     AL   A+ N KVLVV NP N       KN         + L ++   +       +         NV IWGNHS++Q PD     ++   G  +   +     +E  F  T         +QK  R    ++A++  D +   + P P+G
Sbjct:   84 KKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALICLKNAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKID---GRPVKEVIKDTKWLEEEFTITVQKRG-GALIQKWGRSSAASTAVSIADAIKSLVTPTPEG 342          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDHP2_SORBI (Malate dehydrogenase [NADP] 2, chloroplastic OS=Sorghum bicolor PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.066e-19
Identity = 77/263 (29.28%), Postives = 121/263 (46.01%), Query Frame = 3
Query:   63 KEPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPANPMH*F-*KNLRHQSLLRNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTVNTATGENLSMSLSGLCIVEWRFITTANNVVLHHQLQKLPRVCCCNSALTYPDWVLEPLGPGPQG 848
            K+ V + V+GAA  I   L+  +A G + G DQP+ L +L    + +AL GV+MEL D+ +PLL+ V       E    V+ A+++G  PR  GM+R  ++  N  I+     AL   A+ N KVLVV NP N       KN  +      + L ++   +       +         NV IWGNHS++Q PD     ++    + +      L   E+         VL   +QK  R    ++A++  D +   + P P+G
Sbjct:   87 KKLVTIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVRMELEDSLYPLLREVSIGIGPYEVFQDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASRNVKVLVVGNPCNTNALICLKNTPNIPAKNFHALTRLDENRAKCQIALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIDGRPVKEIIQDTKWL-EEEFTMTVQKRGGVL---IQKWGRSSAASTAVSIVDAIKSLVTPTPEG 345          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDHP_MESCR (Malate dehydrogenase [NADP], chloroplastic OS=Mesembryanthemum crystallinum GN=MDH1 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.375e-19
Identity = 75/271 (27.68%), Postives = 124/271 (45.76%), Query Frame = 3
Query:   63 KEPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPANPMH*F-*KNLRHQSLLRNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTVNTATGENLSMSLSGL----CIVEWRFITTANNVVLHHQ----LQKLPRVCCCNSALTYPDWVLEPLGPGPQG 848
            K+ + + V+GAA  I   L+  +A G + G DQP+ L +L    +  AL GV MEL D+ +PLL+ V    D  +       A+++G  PR  GM+R D++  N  I+     AL   A+ N KV+VV NP N       KN  +      + L ++   +       +         N+ IWGNHS++Q PD             L+  + GL     I + +++     V++  +    +QK  R    ++A++  D +   + P P+G
Sbjct:   95 KKMITIAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSFNALEGVAMELEDSLYPLLRAVSIGIDPYDIFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPNIPAKNFHGLTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDF------------LNAKIDGLPVKTVIKDHKWLEEEFTVMIQKRGGALIQKWGRSSAASTAVSIADAIKSLVTPTPEG 353          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDHP_PEA (Malate dehydrogenase [NADP], chloroplastic OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 1.179e-18
Identity = 62/193 (32.12%), Postives = 95/193 (49.22%), Query Frame = 3
Query:   63 KEPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPANPMH*F-*KNLRHQSLLRNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPD 638
            K+ + + V+GAA  I   L+  +A G + G DQP+ L +L    + +AL GV MEL D+ FPLL+ V  + D  E       A+++G  PR  G++R  ++  N  I+     AL   A+ N KV+VV NP N       KN  +      + L ++   +       +         N+ IWGNHS++Q PD
Sbjct:   96 KKLINIAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSIQALEGVAMELEDSLFPLLREVVISIDPYEVFQDAEWALLIGAKPRGPGVERAALLDINGQIFAEQGKALNAVASRNAKVIVVGNPCNTNALICLKNAPNIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPD 288          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDHP_MAIZE (Malate dehydrogenase [NADP], chloroplastic OS=Zea mays PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.540e-18
Identity = 78/262 (29.77%), Postives = 120/262 (45.80%), Query Frame = 3
Query:   72 VRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPANPMH*F-*KNLRHQSLLRNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTVNTATGENLSMSLSGLCIVEWRFITTA--NNVVLHHQLQKLPRVCCCNSALTYPDWVLEPLGPGPQG 848
            V V V+GAA  I   L+  +A G + G DQP+ L +L    + +AL GV MEL D+ +PLL+ V    D       V+ A+++G  PR  GM+R  ++  N  I+     AL   A+ N +VLVV NP N       KN  +      + L ++   +       +         NV IWGNHS++Q PD     ++   G  +   +     +E  F  T      VL   +QK  R    ++A++  D +   + P P+G
Sbjct:   90 VNVAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYVVFQDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASRNDEVLVVGNPCNTNALICLKNAPNIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKID---GRPVKEVIKDTKWLEEEFTLTVQKRGGVL---IQKWGRSSAASTAVSIVDAIRSLVTPTPEG 345          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDHP_MEDSA (Malate dehydrogenase [NADP], chloroplastic OS=Medicago sativa GN=MDH1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.626e-18
Identity = 62/193 (32.12%), Postives = 95/193 (49.22%), Query Frame = 3
Query:   63 KEPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPANPMH*F-*KNLRHQSLLRNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPD 638
            K+ + + V+GAA  I   L+  +A G + G +QP+ L +L    + +AL GV MEL D+ FPLL+ V  + D  E       A+++G  PR  GM+R  ++  N  I+     AL   A+ N KV+VV NP N       KN  +      + L ++   +       +         N+ IWGNHS++Q PD
Sbjct:   92 KKLITIAVSGAAGMISNHLLFKLASGEVFGPNQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVVISIDPYEVFQDAEWALLIGAKPRGPGMERAALLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPNIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPD 284          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDH1B_BRAFL (Putative malate dehydrogenase 1B OS=Branchiostoma floridae GN=MDH1B PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.667e-13
Identity = 58/209 (27.75%), Postives = 97/209 (46.41%), Query Frame = 3
Query:   66 EPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVV-ANPANPM------H*F*KNLRHQSLLRNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTVNTATG 671
            +P+ V V  AAR   Y ++P +  G +L  ++ + LH+ D     E L G++ME+ D +FP LK +  TTD   A    +IA+++  F +    D    M   VS YK  A A+   A+ + +VLV    P N +      H    ++  Q++     + +  +   +   +      V D   VI+WGN   + Y DV++  V+   G
Sbjct:  130 KPLHVCVINAARSPAYHVLPSLVNGKIL-REEEIALHLHDSEENLEKLKGLEMEVFDLSFPFLKEISVTTDLPTAFQNAHIAIVLDDFDQGGKEDAIGDMETKVSFYKRVAEAINQTASKDIRVLVAGTGPLNSLVSILIDH--TPSIPRQNIAAVAQVKERQAKSLLAKRLTVNSAGVCD---VIVWGNVGGTTYTDVSRARVHGYDG 332          
The following BLAST results are available for this feature:
BLAST of EY710868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 187
Match NameE-valueIdentityDescription
MDHP1_SORBI4.786e-2029.66Malate dehydrogenase [NADP] 1, chloroplastic OS=So... [more]
MDHP2_SORBI1.066e-1929.28Malate dehydrogenase [NADP] 2, chloroplastic OS=So... [more]
MDHP_MESCR2.375e-1927.68Malate dehydrogenase [NADP], chloroplastic OS=Mese... [more]
MDHP_PEA1.179e-1832.12Malate dehydrogenase [NADP], chloroplastic OS=Pisu... [more]
MDHP_MAIZE1.540e-1829.77Malate dehydrogenase [NADP], chloroplastic OS=Zea ... [more]
MDHP_MEDSA2.626e-1832.12Malate dehydrogenase [NADP], chloroplastic OS=Medi... [more]
MDH1B_BRAFL5.667e-1327.75Putative malate dehydrogenase 1B OS=Branchiostoma ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-001-B06-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710868 ID=EY710868; Name=EY710868; organism=Citrus sinensis; type=EST; length=862bp
CCACGCGTCCGGGAAAAATCTTTTCGTTTCCTGTGATACATCTCTGATCC
GAACTAATGGCCAAGGAACCAGTTCGCGTTCTCGTCACCGGCGCCGCAAG
GCAAATTGGATATGCACTTGTCCCCATGATTGCTAGGGGAGTGATGTTGG
GTACTGACCAGCCTGTGATTCTGCACATGCTTGATATCCCACCTGCAGCA
GAGGCATTGAATGGTGTGAAGATGGAGTTGGTTGATGCTGCATTCCCTCT
TCTTAAAGGTGTTGATGCTACAACTGATGCTGTTGAGGCATGCACTGGGG
TCAATATTGCCGTTATGGTTGGTGGCTTTCCAAGAAAACAAGGAATGGAT
AGAAAAGATGTGATGTCAAAGAACGTTTCAATCTACAAGGCTCATGCTTC
TGCCCTGGAGCATCACGCAGCTCCGAACTGCAAGGTTCTAGTTGTCGCTA
ACCCTGCAAACCCAATGCATTGATTCTGAAAGAATTTGCGCCATCAATCC
CTGCTAAGAAATTACATGCTTGACCAGATTGGATCATAACAGGGCATTGG
GACAAATATCTGAGAAACTGAATGTCCAGTATCTGATGCTAAGAATGTGA
TTATTTGGGGAAATCATTCATCATCTCAGTACCCTGATGTCAACCAGTGC
ACTGTCAATACTGCCACTGGGGAAAACCTGTCCATGAGCTTGTCAGGATT
ATGCATCGTTGAATGGAGATTCATAACCACAGCCAACAACGTGGTGCTGC
ATCATCAACTCCAAAAGCTCCCAAGGGTCTGCTGCTGCAATTCCGCTTTG
ACCTACCCGGATTGGGTTCTTGAACCCTTAGGACCTGGGCCCCAGGGGGT
TACCTGATGGTC
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