EY710868

Overview
NameEY710868
Unique NameEY710868
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length862
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDH_BURCJ (Malate dehydrogenase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=mdh PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.614e-34
Identity = 95/221 (42.99%), Postives = 121/221 (54.75%), Query Frame = 3
Query:   57 MAKEPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPAN-------------PMH*F*KNLRHQSLLRNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTVNTATGENL 680
            MAK   RV VTGAA QI Y+L+  IA G +LG DQPVIL +LD+P A  A+ GV MEL D AFPLL GV  T D   A    ++A++VG  PR +GM+RKD++S N  I+    +AL   A+ + KVLVV NPAN             P   F   LR   L  N  L Q+ +  G          PV+  + + +WGNHS + YPD       TA GE+L
Sbjct:    1 MAKPAKRVAVTGAAGQIAYSLLFRIANGDLLGKDQPVILQLLDLPQAQAAVKGVVMELDDCAFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLSANAEIFTVQGAALNEVASRDVKVLVVGNPANTNAYIAMKSAPDLPKKNFTAMLR---LDHNRALSQLAAKSG---------KPVASIEKLAVWGNHSPTMYPDFR---FATAEGESL 206          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDH_ACISJ (Malate dehydrogenase OS=Acidovorax sp. (strain JS42) GN=mdh PE=3 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 2.614e-34
Identity = 95/216 (43.98%), Postives = 119/216 (55.09%), Query Frame = 3
Query:   57 MAKEPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPP--AAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPAN-------------PMH*F*KNLRHQSLLRNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTVN 659
            M+K+PVRV VTGAA QIGYAL+  IA G MLG DQPVIL +L+IP   A  AL GV MEL D AFPLL G++A +D + A    + A++VG  PR  GM+R D+++ N  I+ A   AL   A+ N KVLVV NPAN             P   F   LR   L  N    Q+ +  G           V D K + +WGNHS + Y D    TV+
Sbjct:    1 MSKKPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEIPDEKAQNALKGVIMELEDCAFPLLAGIEAHSDPMTAFKDTDYALLVGARPRGPGMERADLLAANAQIFTAQGKALNAVASRNVKVLVVGNPANTNAYIAMKSAPDLPAKNFTAMLR---LDHNRAASQLAAKGGF---------KVGDIKKLTVWGNHSPTMYADYRFATVD 204          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDH1_BURTA (Malate dehydrogenase 1 OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=mdh1 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.614e-34
Identity = 95/221 (42.99%), Postives = 121/221 (54.75%), Query Frame = 3
Query:   57 MAKEPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPAN-------------PMH*F*KNLRHQSLLRNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTVNTATGENL 680
            MAK   RV VTGAA QI Y+L+  IA G +LG DQPVIL +LD+P A  A+ GV MEL D AFPLL GV  T D   A    ++A++VG  PR +GM+RKD++S N  I+    +AL   A+ + KVLVV NPAN             P   F   LR   L  N  L Q+ +  G          PV+  + + +WGNHS + YPD       TA GE+L
Sbjct:    1 MAKPAKRVAVTGAAGQIAYSLLFRIANGDLLGKDQPVILQLLDLPQAQAAVKGVVMELDDCAFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLSANAEIFTVQGAALNEVASRDVKVLVVGNPANTNAYIAMKSAPDLPKKNFTAMLR---LDHNRALSQLAAKSG---------KPVASIEKLAVWGNHSPTMYPDFR---FATAEGESL 206          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDH_MYCUA (Malate dehydrogenase OS=Mycobacterium ulcerans (strain Agy99) GN=mdh PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.414e-34
Identity = 90/226 (39.82%), Postives = 129/226 (57.08%), Query Frame = 3
Query:   57 MAKEPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPANPMH*F-*KNLRHQSLLRNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTVNTATGENLSMSLSGLCIVEWRFITT 731
            M+  P++V VTGAA QIGY+L+  +A G +LG D+P+ L +L+I PA +AL GV MEL D AFPLL GV+  +DA +   G N+A++VG  PR  GM+R D++  N +I+ A   AL   AA + +V V  NPAN        N       R   L ++   + I     +T   V+D K + IWGNHS++QYPD+    V    G+N +  ++    +E  FI T
Sbjct:    1 MSASPLKVAVTGAAGQIGYSLLFRLASGSLLGPDRPIELRLLEIEPALKALEGVVMELDDCAFPLLSGVEIGSDANKIFDGANLALLVGARPRGPGMERSDLLEANGAIFTAQGKALNEVAADDIRVGVTGNPANTNALIAMTNAPDIPRERFSALTRLDHNRAISQLAAKTGVAVTDIKKMTIWGNHSATQYPDLFHAEVK---GKNAAEVVNDQAWIEEYFIPT 223          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDH_MYCMM (Malate dehydrogenase OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=mdh PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.414e-34
Identity = 90/226 (39.82%), Postives = 129/226 (57.08%), Query Frame = 3
Query:   57 MAKEPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPANPMH*F-*KNLRHQSLLRNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTVNTATGENLSMSLSGLCIVEWRFITT 731
            M+  P++V VTGAA QIGY+L+  +A G +LG D+P+ L +L+I PA +AL GV MEL D AFPLL GV+  +DA +   G N+A++VG  PR  GM+R D++  N +I+ A   AL   AA + +V V  NPAN        N       R   L ++   + I     +T   V+D K + IWGNHS++QYPD+    V    G+N +  ++    +E  FI T
Sbjct:    1 MSASPLKVAVTGAAGQIGYSLLFRLASGSLLGPDRPIELRLLEIEPALKALEGVVMELDDCAFPLLSGVEIGSDANKIFDGANLALLVGARPRGPGMERSDLLEANGAIFTAQGKALNEVAADDIRVGVTGNPANTNALIAMTNAPDIPRERFSALTRLDHNRAISQLAAKTGVAVTDIKKMTIWGNHSATQYPDLFHAEVK---GKNAAEVVNDQAWIEEYFIPT 223          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDH_BURCH (Malate dehydrogenase OS=Burkholderia cenocepacia (strain HI2424) GN=mdh PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.414e-34
Identity = 95/221 (42.99%), Postives = 121/221 (54.75%), Query Frame = 3
Query:   57 MAKEPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPAN-------------PMH*F*KNLRHQSLLRNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTVNTATGENL 680
            MAK   RV VTGAA QI Y+L+  IA G +LG DQPVIL +LD+P A  A+ GV MEL D AFPLL GV  T D   A    ++A++VG  PR +GM+RKD++S N  I+    +AL   A+ + KVLVV NPAN             P   F   LR   L  N  L Q+ +  G          PV+  + + +WGNHS + YPD       TA GE+L
Sbjct:    1 MAKPAKRVAVTGAAGQIAYSLLFRIANGDLLGKDQPVILQLLDLPQAQGAVKGVVMELDDCAFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLSANAEIFTVQGAALNEVASRDVKVLVVGNPANTNAYIAMKSAPDLPKKNFTAMLR---LDHNRALSQLAAKSG---------KPVASIEKLAVWGNHSPTMYPDFR---FATAEGESL 206          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDH_BURCC (Malate dehydrogenase OS=Burkholderia cenocepacia (strain MC0-3) GN=mdh PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.414e-34
Identity = 95/221 (42.99%), Postives = 121/221 (54.75%), Query Frame = 3
Query:   57 MAKEPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPAN-------------PMH*F*KNLRHQSLLRNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTVNTATGENL 680
            MAK   RV VTGAA QI Y+L+  IA G +LG DQPVIL +LD+P A  A+ GV MEL D AFPLL GV  T D   A    ++A++VG  PR +GM+RKD++S N  I+    +AL   A+ + KVLVV NPAN             P   F   LR   L  N  L Q+ +  G          PV+  + + +WGNHS + YPD       TA GE+L
Sbjct:    1 MAKPAKRVAVTGAAGQIAYSLLFRIANGDLLGKDQPVILQLLDLPQAQGAVKGVVMELDDCAFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLSANAEIFTVQGAALNEVASRDVKVLVVGNPANTNAYIAMKSAPDLPKKNFTAMLR---LDHNRALSQLAAKSG---------KPVASIEKLAVWGNHSPTMYPDFR---FATAEGESL 206          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDH_BURCA (Malate dehydrogenase OS=Burkholderia cenocepacia (strain AU 1054) GN=mdh PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.414e-34
Identity = 95/221 (42.99%), Postives = 121/221 (54.75%), Query Frame = 3
Query:   57 MAKEPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPAN-------------PMH*F*KNLRHQSLLRNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTVNTATGENL 680
            MAK   RV VTGAA QI Y+L+  IA G +LG DQPVIL +LD+P A  A+ GV MEL D AFPLL GV  T D   A    ++A++VG  PR +GM+RKD++S N  I+    +AL   A+ + KVLVV NPAN             P   F   LR   L  N  L Q+ +  G          PV+  + + +WGNHS + YPD       TA GE+L
Sbjct:    1 MAKPAKRVAVTGAAGQIAYSLLFRIANGDLLGKDQPVILQLLDLPQAQGAVKGVVMELDDCAFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLSANAEIFTVQGAALNEVASRDVKVLVVGNPANTNAYIAMKSAPDLPKKNFTAMLR---LDHNRALSQLAAKSG---------KPVASIEKLAVWGNHSPTMYPDFR---FATAEGESL 206          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDH_BORPE (Malate dehydrogenase OS=Bordetella pertussis GN=mdh PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.459e-34
Identity = 97/215 (45.12%), Postives = 120/215 (55.81%), Query Frame = 3
Query:   57 MAKEPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPP--AAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPAN-------------PMH*F*KNLRHQSLLRNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTV 656
            M+K  +RV VTGAA QIGYAL+  IA G MLG DQPVIL +L+IP   A +AL GV MEL D AFPLL  V A +D   A    ++A++VG  PR  GM+RKD++S N  I+ A   AL   A+ N KVLVV NPAN             P   F   LR   L  N  L Q+ +  G           V+D + +I+WGNHS + YPD    TV
Sbjct:    1 MSKPALRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEIPDEKAQKALKGVIMELEDCAFPLLHEVTAHSDPRTAFKDADVALLVGARPRGPGMERKDLLSVNAQIFTAQGRALNDVASRNVKVLVVGNPANTNAYIAMKSAPDLPAKNFTAMLR---LDHNRALSQLSAKSG---------KRVADIEKLIVWGNHSPTMYPDFRFATV 203          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDH_BORPA (Malate dehydrogenase OS=Bordetella parapertussis GN=mdh PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.459e-34
Identity = 97/215 (45.12%), Postives = 120/215 (55.81%), Query Frame = 3
Query:   57 MAKEPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPP--AAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPAN-------------PMH*F*KNLRHQSLLRNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTV 656
            M+K  +RV VTGAA QIGYAL+  IA G MLG DQPVIL +L+IP   A +AL GV MEL D AFPLL  V A +D   A    ++A++VG  PR  GM+RKD++S N  I+ A   AL   A+ N KVLVV NPAN             P   F   LR   L  N  L Q+ +  G           V+D + +I+WGNHS + YPD    TV
Sbjct:    1 MSKPALRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEIPDEKAQKALKGVIMELEDCAFPLLHEVTAHSDPRTAFKDADVALLVGARPRGPGMERKDLLSVNAQIFTAQGRALNDVASRNVKVLVVGNPANTNAYIAMKSAPDLPAKNFTAMLR---LDHNRALSQLSAKSG---------KRVADIEKLIVWGNHSPTMYPDFRFATV 203          
The following BLAST results are available for this feature:
BLAST of EY710868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 187
Match NameE-valueIdentityDescription
MDH_BURCJ2.614e-3442.99Malate dehydrogenase OS=Burkholderia cepacia (stra... [more]
MDH_ACISJ2.614e-3443.98Malate dehydrogenase OS=Acidovorax sp. (strain JS4... [more]
MDH1_BURTA2.614e-3442.99Malate dehydrogenase 1 OS=Burkholderia thailandens... [more]
MDH_MYCUA3.414e-3439.82Malate dehydrogenase OS=Mycobacterium ulcerans (st... [more]
MDH_MYCMM3.414e-3439.82Malate dehydrogenase OS=Mycobacterium marinum (str... [more]
MDH_BURCH3.414e-3442.99Malate dehydrogenase OS=Burkholderia cenocepacia (... [more]
MDH_BURCC3.414e-3442.99Malate dehydrogenase OS=Burkholderia cenocepacia (... [more]
MDH_BURCA3.414e-3442.99Malate dehydrogenase OS=Burkholderia cenocepacia (... [more]
MDH_BORPE4.459e-3445.12Malate dehydrogenase OS=Bordetella pertussis GN=md... [more]
MDH_BORPA4.459e-3445.12Malate dehydrogenase OS=Bordetella parapertussis G... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-001-B06-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710868 ID=EY710868; Name=EY710868; organism=Citrus sinensis; type=EST; length=862bp
CCACGCGTCCGGGAAAAATCTTTTCGTTTCCTGTGATACATCTCTGATCC
GAACTAATGGCCAAGGAACCAGTTCGCGTTCTCGTCACCGGCGCCGCAAG
GCAAATTGGATATGCACTTGTCCCCATGATTGCTAGGGGAGTGATGTTGG
GTACTGACCAGCCTGTGATTCTGCACATGCTTGATATCCCACCTGCAGCA
GAGGCATTGAATGGTGTGAAGATGGAGTTGGTTGATGCTGCATTCCCTCT
TCTTAAAGGTGTTGATGCTACAACTGATGCTGTTGAGGCATGCACTGGGG
TCAATATTGCCGTTATGGTTGGTGGCTTTCCAAGAAAACAAGGAATGGAT
AGAAAAGATGTGATGTCAAAGAACGTTTCAATCTACAAGGCTCATGCTTC
TGCCCTGGAGCATCACGCAGCTCCGAACTGCAAGGTTCTAGTTGTCGCTA
ACCCTGCAAACCCAATGCATTGATTCTGAAAGAATTTGCGCCATCAATCC
CTGCTAAGAAATTACATGCTTGACCAGATTGGATCATAACAGGGCATTGG
GACAAATATCTGAGAAACTGAATGTCCAGTATCTGATGCTAAGAATGTGA
TTATTTGGGGAAATCATTCATCATCTCAGTACCCTGATGTCAACCAGTGC
ACTGTCAATACTGCCACTGGGGAAAACCTGTCCATGAGCTTGTCAGGATT
ATGCATCGTTGAATGGAGATTCATAACCACAGCCAACAACGTGGTGCTGC
ATCATCAACTCCAAAAGCTCCCAAGGGTCTGCTGCTGCAATTCCGCTTTG
ACCTACCCGGATTGGGTTCTTGAACCCTTAGGACCTGGGCCCCAGGGGGT
TACCTGATGGTC
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