EY710868

Overview
NameEY710868
Unique NameEY710868
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length862
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDH_BORBR (Malate dehydrogenase OS=Bordetella bronchiseptica GN=mdh PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.459e-34
Identity = 97/215 (45.12%), Postives = 120/215 (55.81%), Query Frame = 3
Query:   57 MAKEPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPP--AAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPAN-------------PMH*F*KNLRHQSLLRNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTV 656
            M+K  +RV VTGAA QIGYAL+  IA G MLG DQPVIL +L+IP   A +AL GV MEL D AFPLL  V A +D   A    ++A++VG  PR  GM+RKD++S N  I+ A   AL   A+ N KVLVV NPAN             P   F   LR   L  N  L Q+ +  G           V+D + +I+WGNHS + YPD    TV
Sbjct:    1 MSKPALRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEIPDEKAQKALKGVIMELEDCAFPLLHEVTAHSDPRTAFKDADVALLVGARPRGPGMERKDLLSVNAQIFTAQGRALNDVASRNVKVLVVGNPANTNAYIAMKSAPDLPAKNFTAMLR---LDHNRALSQLSAKSG---------KRVADIEKLIVWGNHSPTMYPDFRFATV 203          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDH_AKKM8 (Malate dehydrogenase OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=mdh PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.459e-34
Identity = 84/203 (41.38%), Postives = 114/203 (56.16%), Query Frame = 3
Query:   63 KEPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPAN-----PMH*F*KNLRHQSLLRNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTV 656
            K P+ V VTGAA QI Y+L+  IA G MLG DQP+ L +L+IPPA  AL GV MEL DAAFPL+  +  T+D  EA  G N  ++VG  PRK GM+RKD++  N  ++     A+   AA + +VLVV NP N      MH    N       R + + ++   +       +    V++  N+ IWGNHSS+QYPD     +
Sbjct:    2 KTPITVTVTGAAGQIAYSLLFRIASGSMLGPDQPINLRLLEIPPAMNALEGVVMELRDAAFPLVNEIVPTSDPDEAFAGANWCLLVGSVPRKAGMERKDLLDINGKVFIGQGQAIARSAAKDVRVLVVGNPCNTNALIAMH----NASGVPSDRFFAMTRLDENRAKSQLAEKAGVHVTEVTNMAIWGNHSSTQYPDFTNARI 200          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDH_ACICJ (Malate dehydrogenase OS=Acidiphilium cryptum (strain JF-5) GN=mdh PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.459e-34
Identity = 89/204 (43.63%), Postives = 112/204 (54.90%), Query Frame = 3
Query:   57 MAKEPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPANP-MH*F*KNLRHQS---------LLRNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPD 638
            MAK PVR+ VTGAA QI YALV  IA G +LG DQPVILH+LD+P    AL GV MEL D AFPLL G+ AT D   A   ++I  +VG  PR +GM+RKD++  N  I+     AL   A  + +VLVV NPAN   +   K+    S         L  N     + +  G+          V D   +I+WGNHS + YPD
Sbjct:    1 MAKSPVRIAVTGAAGQIAYALVFRIASGALLGPDQPVILHLLDLPQMQGALGGVMMELEDCAFPLLAGMVATDDPKVAFKDIDIGFLVGARPRGKGMERKDLLGANAEIFTVQGRALNEVAKRSARVLVVGNPANTNAYIAMKSAPDLSPDCFSAMIRLDHNRAASMLAAKAGVN---------VGDVGKLIVWGNHSPTMYPD 195          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDH_DECAR (Malate dehydrogenase OS=Dechloromonas aromatica (strain RCB) GN=mdh PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 7.605e-34
Identity = 82/205 (40.00%), Postives = 119/205 (58.05%), Query Frame = 3
Query:   57 MAKEPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPANPMH*F*----KNLRHQSLLRNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTVN 659
            M+K P+RV +TGAA QIGY+L+  IA G MLG DQPVIL +LD+P A +A+ GV MEL D AFPLL G+ AT D   A    ++ ++VG  PR +GM+R D+++ N +I+     A+  +A  + KVLVV NP N          K +   +    + + ++   + +     +T   VS  K +++WGNHS + Y D   CT N
Sbjct:    1 MSKAPMRVAITGAAGQIGYSLLFRIASGEMLGKDQPVILQLLDLPQAQQAVKGVMMELEDCAFPLLAGMVATDDPNVAFKDADVCLLVGARPRTKGMERADLLTANGAIFTVQGKAIAENAKEDVKVLVVGNPCNTNAFIAAAAAKKVGRTNPNNYHGMLRLDHNRALSQLAGKTGRAVSSLKKLVVWGNHSPTMYADYRFCTSN 205          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDH_COXBN (Malate dehydrogenase OS=Coxiella burnetii (strain Dugway 5J108-111) GN=mdh PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 7.605e-34
Identity = 88/202 (43.56%), Postives = 115/202 (56.93%), Query Frame = 3
Query:   57 MAKEPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPANPMH*F-*KNLRHQSLLRNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTVN 659
            MAK  V+V VTGAA QIGYAL+  +A G   G D  V LH+L+I PA  AL GV  EL D AFPLL  +  T+D   A   VN A++VG  PRK GM+RKD++ KN SI+     A+  +AA + ++ VV NP N        N       R Y + ++   + IG    +    V   KN+IIWGNHSS+QYPD    T++
Sbjct:    1 MAKH-VKVAVTGAAGQIGYALLFRLASGQAFGLDTTVDLHLLEIEPALPALKGVVTELEDCAFPLLCNMVVTSDPRVAFNDVNWALLVGAAPRKAGMERKDLLEKNGSIFAGQGKAINENAASDVRIFVVGNPCNTNCLIAMNNAPDIPKDRFYAMTRLDQNRAIGQLALKAGVDVPSVKNMIIWGNHSSTQYPDFYHATID 201          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDH_BURPP (Malate dehydrogenase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=mdh PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 7.605e-34
Identity = 94/222 (42.34%), Postives = 121/222 (54.50%), Query Frame = 3
Query:   57 MAKEPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPAN-------------PMH*F*KNLRHQSLLRNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTVNTATGENLS 683
            MAK   RV VTGAA QI Y+L+  IA G +LG DQPVIL +LD+P A  A+ GV MEL D AFPLL GV  T D   A    ++A++VG  PR +GM+RKD++S N  I+     AL   A+ + KVLVV NPAN             P   F   LR   L  N  L Q+ +  G          PV+  + + +WGNHS + YPD       TA G++L+
Sbjct:    1 MAKPAKRVAVTGAAGQIAYSLLFRIANGDLLGKDQPVILQLLDLPQAQGAVKGVVMELDDCAFPLLSGVVITDDPEVAFKDADVALLVGARPRSKGMERKDLLSANAEIFTVQGKALNKVASRDVKVLVVGNPANTNAYIAMKSAPDLPKKNFTAMLR---LDHNRALSQLAAKSG---------KPVASIEKLAVWGNHSPTMYPDFR---FATAEGQDLT 207          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDH_MYCTU (Malate dehydrogenase OS=Mycobacterium tuberculosis GN=mdh PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 9.933e-34
Identity = 89/226 (39.38%), Postives = 129/226 (57.08%), Query Frame = 3
Query:   57 MAKEPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPANPMH*F-*KNLRHQSLLRNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTVNTATGENLSMSLSGLCIVEWRFITT 731
            M+  P++V VTGAA QIGY+L+  +A G +LG D+P+ L +L+I PA +AL GV MEL D AFPLL GV+  +D  +   GV++A++VG  PR  GM+R D++  N +I+ A   AL   AA + +V V  NPAN        N       R   L ++   + I     +T   V+D K + IWGNHS++QYPD+    V    G+N +  ++    +E  FI T
Sbjct:    1 MSASPLKVAVTGAAGQIGYSLLFRLASGSLLGPDRPIELRLLEIEPALQALEGVVMELDDCAFPLLSGVEIGSDPQKIFDGVSLALLVGARPRGAGMERSDLLEANGAIFTAQGKALNAVAADDVRVGVTGNPANTNALIAMTNAPDIPRERFSALTRLDHNRAISQLAAKTGAAVTDIKKMTIWGNHSATQYPDLFHAEV---AGKNAAEVVNDQAWIEDEFIPT 223          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDH_MYCTA (Malate dehydrogenase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=mdh PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 9.933e-34
Identity = 89/226 (39.38%), Postives = 129/226 (57.08%), Query Frame = 3
Query:   57 MAKEPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPANPMH*F-*KNLRHQSLLRNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTVNTATGENLSMSLSGLCIVEWRFITT 731
            M+  P++V VTGAA QIGY+L+  +A G +LG D+P+ L +L+I PA +AL GV MEL D AFPLL GV+  +D  +   GV++A++VG  PR  GM+R D++  N +I+ A   AL   AA + +V V  NPAN        N       R   L ++   + I     +T   V+D K + IWGNHS++QYPD+    V    G+N +  ++    +E  FI T
Sbjct:    1 MSASPLKVAVTGAAGQIGYSLLFRLASGSLLGPDRPIELRLLEIEPALQALEGVVMELDDCAFPLLSGVEIGSDPQKIFDGVSLALLVGARPRGAGMERSDLLEANGAIFTAQGKALNAVAADDVRVGVTGNPANTNALIAMTNAPDIPRERFSALTRLDHNRAISQLAAKTGAAVTDIKKMTIWGNHSATQYPDLFHAEV---AGKNAAEVVNDQAWIEDEFIPT 223          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDH_MYCBT (Malate dehydrogenase OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=mdh PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 9.933e-34
Identity = 89/226 (39.38%), Postives = 129/226 (57.08%), Query Frame = 3
Query:   57 MAKEPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPANPMH*F-*KNLRHQSLLRNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTVNTATGENLSMSLSGLCIVEWRFITT 731
            M+  P++V VTGAA QIGY+L+  +A G +LG D+P+ L +L+I PA +AL GV MEL D AFPLL GV+  +D  +   GV++A++VG  PR  GM+R D++  N +I+ A   AL   AA + +V V  NPAN        N       R   L ++   + I     +T   V+D K + IWGNHS++QYPD+    V    G+N +  ++    +E  FI T
Sbjct:    1 MSASPLKVAVTGAAGQIGYSLLFRLASGSLLGPDRPIELRLLEIEPALQALEGVVMELDDCAFPLLSGVEIGSDPQKIFDGVSLALLVGARPRGAGMERSDLLEANGAIFTAQGKALNAVAADDVRVGVTGNPANTNALIAMTNAPDIPRERFSALTRLDHNRAISQLAAKTGAAVTDIKKMTIWGNHSATQYPDLFHAEV---AGKNAAEVVNDQAWIEDEFIPT 223          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDH_MYCBP (Malate dehydrogenase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=mdh PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 9.933e-34
Identity = 89/226 (39.38%), Postives = 129/226 (57.08%), Query Frame = 3
Query:   57 MAKEPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPANPMH*F-*KNLRHQSLLRNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTVNTATGENLSMSLSGLCIVEWRFITT 731
            M+  P++V VTGAA QIGY+L+  +A G +LG D+P+ L +L+I PA +AL GV MEL D AFPLL GV+  +D  +   GV++A++VG  PR  GM+R D++  N +I+ A   AL   AA + +V V  NPAN        N       R   L ++   + I     +T   V+D K + IWGNHS++QYPD+    V    G+N +  ++    +E  FI T
Sbjct:    1 MSASPLKVAVTGAAGQIGYSLLFRLASGSLLGPDRPIELRLLEIEPALQALEGVVMELDDCAFPLLSGVEIGSDPQKIFDGVSLALLVGARPRGAGMERSDLLEANGAIFTAQGKALNAVAADDVRVGVTGNPANTNALIAMTNAPDIPRERFSALTRLDHNRAISQLAAKTGAAVTDIKKMTIWGNHSATQYPDLFHAEV---AGKNAAEVVNDQAWIEDEFIPT 223          
The following BLAST results are available for this feature:
BLAST of EY710868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 187
Match NameE-valueIdentityDescription
MDH_BORBR4.459e-3445.12Malate dehydrogenase OS=Bordetella bronchiseptica ... [more]
MDH_AKKM84.459e-3441.38Malate dehydrogenase OS=Akkermansia muciniphila (s... [more]
MDH_ACICJ4.459e-3443.63Malate dehydrogenase OS=Acidiphilium cryptum (stra... [more]
MDH_DECAR7.605e-3440.00Malate dehydrogenase OS=Dechloromonas aromatica (s... [more]
MDH_COXBN7.605e-3443.56Malate dehydrogenase OS=Coxiella burnetii (strain ... [more]
MDH_BURPP7.605e-3442.34Malate dehydrogenase OS=Burkholderia phytofirmans ... [more]
MDH_MYCTU9.933e-3439.38Malate dehydrogenase OS=Mycobacterium tuberculosis... [more]
MDH_MYCTA9.933e-3439.38Malate dehydrogenase OS=Mycobacterium tuberculosis... [more]
MDH_MYCBT9.933e-3439.38Malate dehydrogenase OS=Mycobacterium bovis (strai... [more]
MDH_MYCBP9.933e-3439.38Malate dehydrogenase OS=Mycobacterium bovis (strai... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-702-001-B06-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710868 ID=EY710868; Name=EY710868; organism=Citrus sinensis; type=EST; length=862bp
CCACGCGTCCGGGAAAAATCTTTTCGTTTCCTGTGATACATCTCTGATCC
GAACTAATGGCCAAGGAACCAGTTCGCGTTCTCGTCACCGGCGCCGCAAG
GCAAATTGGATATGCACTTGTCCCCATGATTGCTAGGGGAGTGATGTTGG
GTACTGACCAGCCTGTGATTCTGCACATGCTTGATATCCCACCTGCAGCA
GAGGCATTGAATGGTGTGAAGATGGAGTTGGTTGATGCTGCATTCCCTCT
TCTTAAAGGTGTTGATGCTACAACTGATGCTGTTGAGGCATGCACTGGGG
TCAATATTGCCGTTATGGTTGGTGGCTTTCCAAGAAAACAAGGAATGGAT
AGAAAAGATGTGATGTCAAAGAACGTTTCAATCTACAAGGCTCATGCTTC
TGCCCTGGAGCATCACGCAGCTCCGAACTGCAAGGTTCTAGTTGTCGCTA
ACCCTGCAAACCCAATGCATTGATTCTGAAAGAATTTGCGCCATCAATCC
CTGCTAAGAAATTACATGCTTGACCAGATTGGATCATAACAGGGCATTGG
GACAAATATCTGAGAAACTGAATGTCCAGTATCTGATGCTAAGAATGTGA
TTATTTGGGGAAATCATTCATCATCTCAGTACCCTGATGTCAACCAGTGC
ACTGTCAATACTGCCACTGGGGAAAACCTGTCCATGAGCTTGTCAGGATT
ATGCATCGTTGAATGGAGATTCATAACCACAGCCAACAACGTGGTGCTGC
ATCATCAACTCCAAAAGCTCCCAAGGGTCTGCTGCTGCAATTCCGCTTTG
ACCTACCCGGATTGGGTTCTTGAACCCTTAGGACCTGGGCCCCAGGGGGT
TACCTGATGGTC
back to top