EY686123

Overview
NameEY686123
Unique NameEY686123
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY686123 vs. ExPASy Swiss-Prot
Match: PSAD_SYNY3 (Photosystem I reaction center subunit II OS=Synechocystis sp. (strain PCC 6803) GN=psaD PE=1 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 2.743e-35
Identity = 56/75 (74.67%), Postives = 60/75 (80.00%), Query Frame = 2 
Query:  233 PIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFY 457
            P FGGSTGGLL KA  EE Y ITW S  EQ+FEMPTGGAAIM EG NLL LARKEQCLALGT+LR+K+K K Q Y
Sbjct:    9 PKFGGSTGGLLSKANREEKYAITWTSASEQVFEMPTGGAAIMNEGENLLYLARKEQCLALGTQLRTKFKPKIQDY 83

HSP 2 Score: 56.6102 bits (135), Expect = 2.743e-35
Identity = 26/49 (53.06%), Postives = 32/49 (65.31%), Query Frame = 3 
Query:  459 RVFPNGEVQYLHPQDGVYPDKVHPETEGVGQK*RPIGNNVRHIEAKLQG 605
            RV+P+GEVQYLHP DGV+P+KV+   E  G K R IG N   +  K  G
Sbjct:   87 RVYPSGEVQYLHPADGVFPEKVNEGREAQGTKTRRIGQNPEPVTIKFSG 135
[Close]
BLAST of EY686123 vs. ExPASy Swiss-Prot
Match: PSAD_SKECO (Photosystem I reaction center subunit II OS=Skeletonema costatum GN=psaD PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.030e-34
Identity = 60/88 (68.18%), Postives = 67/88 (76.14%), Query Frame = 2 
Query:  212 LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLR----SKYKIKYQFYPS 463
            L+  TP P FGGSTGG LR A+VEE Y ITW S KEQIFEMPTGG+AIMR G NLL LARKEQCLAL T+LR    + YKI Y+ +PS
Sbjct:    3 LNLKTPFPTFGGSTGGWLRAAEVEEKYAITWTSAKEQIFEMPTGGSAIMRNGENLLYLARKEQCLALSTQLRTFKINDYKI-YRIFPS 89

HSP 2 Score: 54.299 bits (129), Expect = 1.030e-34
Identity = 24/49 (48.98%), Postives = 31/49 (63.27%), Query Frame = 3 
Query:  459 RVFPNGEVQYLHPQDGVYPDKVHPETEGVGQK*RPIGNNVRHIEAKLQG 605
            R+FP+GEVQYLHP+DGV+P+KV+P    V  +   IG N      K  G
Sbjct:   85 RIFPSGEVQYLHPKDGVFPEKVNPGRTSVNSRGFSIGKNPNPASIKFSG 133
[Close]
BLAST of EY686123 vs. ExPASy Swiss-Prot
Match: PSAD_MASLA (Photosystem I reaction center subunit II OS=Mastigocladus laminosus GN=psaD PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.340e-34
Identity = 58/82 (70.73%), Postives = 69/82 (84.15%), Query Frame = 2 
Query:  230 SPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLR----SKYKIKYQFYPS 463
            +PIFGGSTGGLL+KA+VEE Y ITW SPKEQ+FEMPTGGAA MR+G NLL LARKEQC+ALG++LR    + YKI Y+ YP+
Sbjct:    9 TPIFGGSTGGLLKKAEVEEKYAITWTSPKEQVFEMPTGGAAKMRQGQNLLYLARKEQCIALGSQLRRLKITDYKI-YRIYPN 89

HSP 2 Score: 50.447 bits (119), Expect = 1.340e-34
Identity = 22/49 (44.90%), Postives = 30/49 (61.22%), Query Frame = 3 
Query:  459 RVFPNGEVQYLHPQDGVYPDKVHPETEGVGQK*RPIGNNVRHIEAKLQG 605
            R++PNGE  Y+HP DGV+P+KV+P  + V    R IG N    + K  G
Sbjct:   85 RIYPNGETAYIHPADGVFPEKVNPGRQKVRYNDRRIGQNPDPAKLKFSG 133
[Close]
BLAST of EY686123 vs. ExPASy Swiss-Prot
Match: PSAD_PORYE (Photosystem I reaction center subunit II OS=Porphyra yezoensis GN=psaD PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.745e-34
Identity = 55/86 (63.95%), Postives = 63/86 (73.26%), Query Frame = 2 
Query:  203 PPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIK-YQFY 457
            P  ++ N PSP FGGSTGG LR A+VEE Y ITW    E  FEMPTGG A MR G NLL LA+KEQCLALGT+L+SK+KI  Y+ Y
Sbjct:    2 PDTINLNMPSPTFGGSTGGWLRAAEVEEKYAITWTGKNESKFEMPTGGTATMRNGENLLYLAKKEQCLALGTQLKSKFKISDYKIY 87

HSP 2 Score: 55.4546 bits (132), Expect = 1.745e-34
Identity = 24/46 (52.17%), Postives = 31/46 (67.39%), Query Frame = 3 
Query:  459 RVFPNGEVQYLHPQDGVYPDKVHPETEGVGQK*RPIGNNVRHIEAK 596
            RVFPNGEVQYLHP+DGV+P+KV+     V      IG N+  ++ K
Sbjct:   88 RVFPNGEVQYLHPKDGVFPEKVNTGRASVNSVDHSIGQNINPVDVK 133
[Close]
BLAST of EY686123 vs. ExPASy Swiss-Prot
Match: PSAD_PORPU (Photosystem I reaction center subunit II OS=Porphyra purpurea GN=psaD PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.857e-34
Identity = 54/86 (62.79%), Postives = 63/86 (73.26%), Query Frame = 2 
Query:  203 PPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIK-YQFY 457
            P  ++ N PSP FGGSTGG LR A+VEE Y ITW    E  FEMPTGG A MR+G NLL LA+KEQCLALGT+L+ K+KI  Y+ Y
Sbjct:    2 PDTINLNMPSPTFGGSTGGWLRAAEVEEKYAITWTGKNESKFEMPTGGTATMRDGENLLYLAKKEQCLALGTQLKGKFKISDYKIY 87

HSP 2 Score: 55.0694 bits (131), Expect = 3.857e-34
Identity = 25/46 (54.35%), Postives = 30/46 (65.22%), Query Frame = 3 
Query:  459 RVFPNGEVQYLHPQDGVYPDKVHPETEGVGQK*RPIGNNVRHIEAK 596
            RVFPNGEVQYLHP+DGV+P+KV+     +      IG NV  I  K
Sbjct:   88 RVFPNGEVQYLHPKDGVFPEKVNAGRASINSVDHSIGKNVNPINVK 133
[Close]
BLAST of EY686123 vs. ExPASy Swiss-Prot
Match: PSAD_SYNP6 (Photosystem I reaction center subunit II OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=psaD PE=1 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 3.713e-31
Identity = 53/83 (63.86%), Postives = 65/83 (78.31%), Query Frame = 2 
Query:  230 SPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIK------YQFYP 460
            +P+FGGSTGGLL+ A+ EE Y ITW S KEQ+FE+PTGGAA+M EG NLL  ARKEQ LALGT+LR+K+K K      Y+F+P
Sbjct:    9 TPVFGGSTGGLLKSAETEEKYAITWTSTKEQVFELPTGGAAVMHEGDNLLYFARKEQALALGTQLRTKFKPKIESYKIYRFFP 91

HSP 2 Score: 43.8986 bits (102), Expect = 3.713e-31
Identity = 21/49 (42.86%), Postives = 27/49 (55.10%), Query Frame = 3 
Query:  459 RVFPNGEVQYLHPQDGVYPDKVHPETEGVGQK*RPIGNNVRHIEAKLQG 605
            R FP  +V YLHP+DGV+P+KV+      G+  R IG N      K  G
Sbjct:   88 RFFPGADVGYLHPKDGVFPEKVNEGRSFAGKVDRRIGQNPNPATIKFTG 136
[Close]
BLAST of EY686123 vs. ExPASy Swiss-Prot
Match: PSAD_GLOVI (Photosystem I reaction center subunit II OS=Gloeobacter violaceus GN=psaD PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 7.288e-29
Identity = 54/92 (58.70%), Postives = 66/92 (71.74%), Query Frame = 2 
Query:  209 ELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIK----YQFYPSVSQ 472
            EL     +P+FGGSTGGLLRKAQ+EE Y+I W S +EQ+FEMPTGGAA M  G N+L LARKEQC AL  +L S +KI+    Y+ YP+  Q
Sbjct:    6 ELPFGGSTPLFGGSTGGLLRKAQIEEKYLIVWNSKEEQVFEMPTGGAATMVAGTNVLYLARKEQCHALHRQLVSTFKIRDSKIYRVYPNGEQ 97

HSP 2 Score: 43.5134 bits (101), Expect = 7.288e-29
Identity = 24/53 (45.28%), Postives = 31/53 (58.49%), Query Frame = 3 
Query:  459 RVFPNGEVQYLHPQDGVYPDKVHPETEGVGQK*RPIGNNVRHIEAKLQGGKET 617
            RV+PNGE   + P DGV  +K +P  E VG   R IG+N   ++ K   GKET
Sbjct:   90 RVYPNGEQVLIFPMDGVPSEKSNPGREVVGYVPRKIGDNPNPVDVKFT-GKET 141
[Close]
BLAST of EY686123 vs. ExPASy Swiss-Prot
Match: PSAD_NOSS8 (Photosystem I reaction center subunit II OS=Nostoc sp. (strain PCC 8009) GN=psaD PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.238e-28
Identity = 51/82 (62.20%), Postives = 62/82 (75.61%), Query Frame = 2 
Query:  230 SPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLR----SKYKIKYQFYPS 463
            +P+F GSTGGLL KA VEE Y ITW SPK Q+FE+PTGGAA M +G NLL LARKEQ +ALG +LR    + YKI Y+ +P+
Sbjct:    8 TPLFAGSTGGLLTKANVEEKYAITWTSPKAQVFELPTGGAATMNQGENLLYLARKEQGIALGGQLRKFKITDYKI-YRIFPN 88

HSP 2 Score: 47.3654 bits (111), Expect = 1.238e-28
Identity = 22/49 (44.90%), Postives = 29/49 (59.18%), Query Frame = 3 
Query:  459 RVFPNGEVQYLHPQDGVYPDKVHPETEGVGQK*RPIGNNVRHIEAKLQG 605
            R+FPNGE  ++HP DGV+P+KV+   E V    R IG N    + K  G
Sbjct:   84 RIFPNGETTFIHPADGVFPEKVNEGREKVRFVPRRIGQNPSPAQLKFSG 132
[Close]
BLAST of EY686123 vs. ExPASy Swiss-Prot
Match: PSAD_THEVL (Photosystem I reaction center subunit II OS=Thermosynechococcus vulcanus GN=psaD PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 1.238e-28
Identity = 50/81 (61.73%), Postives = 58/81 (71.60%), Query Frame = 2 
Query:  233 PIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGT-----RLRSKYKIKYQFYP 460
            P++GGSTGGLL  A  EE Y ITW SPKEQ+FEMPT GAA+MREG NL+  ARKEQCLAL       R  + YKI Y+ +P
Sbjct:    9 PLYGGSTGGLLSAADTEEKYAITWTSPKEQVFEMPTAGAAVMREGENLVYFARKEQCLALAAQQLRPRKINDYKI-YRIFP 88

HSP 2 Score: 48.1358 bits (113), Expect = 1.238e-28
Identity = 22/51 (43.14%), Postives = 30/51 (58.82%), Query Frame = 3 
Query:  459 RVFPNGEVQYLHPQDGVYPDKVHPETEGVGQK*RPIGNNVRHIEAKLQGGK 611
            R+FP+GE   +HP+DGV+P+KV+   E V    R IG N    + K  G K
Sbjct:   85 RIFPDGETVLIHPKDGVFPEKVNKGREAVNSVPRSIGQNPNPSQLKFTGKK 135
[Close]
BLAST of EY686123 vs. ExPASy Swiss-Prot
Match: PSAD_THEEB (Photosystem I reaction center subunit II OS=Thermosynechococcus elongatus (strain BP-1) GN=psaD PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 1.238e-28
Identity = 50/81 (61.73%), Postives = 58/81 (71.60%), Query Frame = 2 
Query:  233 PIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGT-----RLRSKYKIKYQFYP 460
            P++GGSTGGLL  A  EE Y ITW SPKEQ+FEMPT GAA+MREG NL+  ARKEQCLAL       R  + YKI Y+ +P
Sbjct:    9 PLYGGSTGGLLSAADTEEKYAITWTSPKEQVFEMPTAGAAVMREGENLVYFARKEQCLALAAQQLRPRKINDYKI-YRIFP 88

HSP 2 Score: 48.1358 bits (113), Expect = 1.238e-28
Identity = 22/51 (43.14%), Postives = 30/51 (58.82%), Query Frame = 3 
Query:  459 RVFPNGEVQYLHPQDGVYPDKVHPETEGVGQK*RPIGNNVRHIEAKLQGGK 611
            R+FP+GE   +HP+DGV+P+KV+   E V    R IG N    + K  G K
Sbjct:   85 RIFPDGETVLIHPKDGVFPEKVNKGREAVNSVPRSIGQNPNPSQLKFTGKK 135
The following BLAST results are available for this feature:
BLAST of EY686123 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
PSAD_SYNY32.743e-3574.67Photosystem I reaction center subunit II OS=Synech... [more]
PSAD_SKECO1.030e-3468.18Photosystem I reaction center subunit II OS=Skelet... [more]
PSAD_MASLA1.340e-3470.73Photosystem I reaction center subunit II OS=Mastig... [more]
PSAD_PORYE1.745e-3463.95Photosystem I reaction center subunit II OS=Porphy... [more]
PSAD_PORPU3.857e-3462.79Photosystem I reaction center subunit II OS=Porphy... [more]
PSAD_SYNP63.713e-3163.86Photosystem I reaction center subunit II OS=Synech... [more]
PSAD_GLOVI7.288e-2958.70Photosystem I reaction center subunit II OS=Gloeob... [more]
PSAD_NOSS81.238e-2862.20Photosystem I reaction center subunit II OS=Nostoc... [more]
PSAD_THEVL1.238e-2861.73Photosystem I reaction center subunit II OS=Thermo... [more]
PSAD_THEEB1.238e-2861.73Photosystem I reaction center subunit II OS=Thermo... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-034-H02-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY686123 ID=EY686123; Name=EY686123; organism=Citrus sinensis; type=EST; length=811bp
AATGGCCATGGCCGCAACAACTCAAGCCTCTCTCTTCGCACCGGCCAACT
TCTCCACCACCAAATCCTCTGCGCCGTGGAAGCAATCATCATCATTTTCA
GTAAGGCCACTAAAACATAATGCCCCACGTACCAACACCATCAAGGCCAT
GGCTGAGGGAAAAACAGAGACACCCACAAAAGAGGCTCCGGTGGGCTTCA
CCCCACCAGAACTGGACCCCAACACCCCATCTCCGATCTTCGGAGGCAGC
ACCGGCGGGCTGCTGCGGAAGGCTCAGGTGGAAGAGTTTTATGTGATCAC
ATGGGAGTCTCCTAAGGAGCAAATATTTGAAATGCCCACTGGGGGTGCGG
CCATTATGAGAGAAGGTCCGAATTTGCTGAAGCTGGCTAGGAAAGAGCAG
TGCTTGGCTCTGGGGACAAGGCTGAGGTCCAAGTACAAGATTAAGTACCA
GTTTTACCCGAGTGTTTCCCAATGGAGAGGTTCAGTATTTGCATCCCCAA
GATGGTGTTTATCCTGACAAAGTGCACCCCGAAACGGAAGGAGTTGGACA
AAAATAAAGGCCTATTGGCAACAATGTAAGACATATAGAGGCCAAACTAC
AAGGAGGCAAGGAGACTAACTGGAAACGAAAATCGAAACCAGAAAAGCGA
ACCCAACAGGAAGAAATGGGAACCAATGGCAAGATCCTCAGTGGAAGCCA
AGCAGGGGCGAGGGGACACACAACATTGAAGAAAGCCCACAATAAACGAA
CACAGAAGCATAAAACAAGAAACAGCCCACAGAGCTAAAAAAAAGAAAGA
AGAACAAGAAA
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