EY686123

Overview
NameEY686123
Unique NameEY686123
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY686123 vs. ExPASy Swiss-Prot
Match: PSAD_SYNEN (Photosystem I reaction center subunit II OS=Synechococcus elongatus naegeli GN=psaD PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 1.238e-28
Identity = 50/81 (61.73%), Postives = 58/81 (71.60%), Query Frame = 2
Query:  233 PIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGT-----RLRSKYKIKYQFYP 460
            P++GGSTGGLL  A  EE Y ITW SPKEQ+FEMPT GAA+MREG NL+  ARKEQCLAL       R  + YKI Y+ +P
Sbjct:    9 PLYGGSTGGLLSAADTEEKYAITWTSPKEQVFEMPTAGAAVMREGENLVYFARKEQCLALAAQQLRPRKINDYKI-YRIFP 88          

HSP 2 Score: 48.1358 bits (113), Expect = 1.238e-28
Identity = 22/51 (43.14%), Postives = 30/51 (58.82%), Query Frame = 3
Query:  459 RVFPNGEVQYLHPQDGVYPDKVHPETEGVGQK*RPIGNNVRHIEAKLQGGK 611
            R+FP+GE   +HP+DGV+P+KV+   E V    R IG N    + K  G K
Sbjct:   85 RIFPDGETVLIHPKDGVFPEKVNKGREAVNSVPRSIGQNPNPSQLKFTGKK 135          
BLAST of EY686123 vs. ExPASy Swiss-Prot
Match: PSAD_ANAVT (Photosystem I reaction center subunit II OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=psaD PE=1 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 2.937e-27
Identity = 49/77 (63.64%), Postives = 58/77 (75.32%), Query Frame = 2
Query:  230 SPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKI-KYQFY 457
            +P+F GSTGGLL KA  EE Y ITW SPK Q+FE+PTGGAA M EG NLL +ARKE  +ALG +LR K+KI  Y+ Y
Sbjct:    9 TPLFAGSTGGLLTKAVEEEKYAITWTSPKAQVFELPTGGAATMHEGENLLYIARKEYGIALGGQLR-KFKITNYKIY 84          

HSP 2 Score: 47.7506 bits (112), Expect = 2.937e-27
Identity = 21/49 (42.86%), Postives = 29/49 (59.18%), Query Frame = 3
Query:  459 RVFPNGEVQYLHPQDGVYPDKVHPETEGVGQK*RPIGNNVRHIEAKLQG 605
            R+ P+GE  ++HP DGV+P+KV+P  E V    R IG N    + K  G
Sbjct:   85 RILPSGETTFIHPADGVFPEKVNPGREKVRFNARSIGENPNPSQVKFSG 133          
BLAST of EY686123 vs. ExPASy Swiss-Prot
Match: PSAD_FREDI (Photosystem I reaction center subunit II OS=Fremyella diplosiphon GN=psaD PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.422e-26
Identity = 50/77 (64.94%), Postives = 62/77 (80.52%), Query Frame = 2
Query:  230 SPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKI-KYQFY 457
            +P+F GSTGGLL+KA+VEE Y ITW SPK Q+FE+PTGGAA M++G NLL LARKE  +ALG +LR K+KI  Y+ Y
Sbjct:    8 TPLFAGSTGGLLKKAEVEEKYAITWTSPKAQVFELPTGGAATMQQGQNLLYLARKEYGIALGGQLR-KFKITDYKIY 83          

HSP 2 Score: 40.0466 bits (92), Expect = 2.422e-26
Identity = 20/49 (40.82%), Postives = 25/49 (51.02%), Query Frame = 3
Query:  459 RVFPNGEVQYLHPQDGVYPDKVHPETEGVGQK*RPIGNNVRHIEAKLQG 605
            R+ P GE   +HP DGV+P+KV+   E V    R IG N      K  G
Sbjct:   84 RILPGGETTLIHPADGVFPEKVNAGREKVRFVPRRIGENPNPSAIKFSG 132          
BLAST of EY686123 vs. ExPASy Swiss-Prot
Match: PSAD_ANASP (Photosystem I reaction center subunit II OS=Anabaena sp. (strain PCC 7120) GN=psaD PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.422e-26
Identity = 49/77 (63.64%), Postives = 58/77 (75.32%), Query Frame = 2
Query:  230 SPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKI-KYQFY 457
            +P+F GSTGGLL KA  EE Y ITW SPK Q+FE+PTGGAA M EG NLL +ARKE  +ALG +LR K+KI  Y+ Y
Sbjct:    9 TPLFAGSTGGLLTKAVEEEKYAITWTSPKAQVFELPTGGAATMHEGENLLYIARKEYGIALGGQLR-KFKITNYKIY 84          

HSP 2 Score: 44.669 bits (104), Expect = 2.422e-26
Identity = 20/49 (40.82%), Postives = 28/49 (57.14%), Query Frame = 3
Query:  459 RVFPNGEVQYLHPQDGVYPDKVHPETEGVGQK*RPIGNNVRHIEAKLQG 605
            R+ P+GE  ++HP DGV+P+KV+   E V    R IG N    + K  G
Sbjct:   85 RILPSGETTFIHPADGVFPEKVNAGREKVRFNARSIGENPNPSQVKFSG 133          
BLAST of EY686123 vs. ExPASy Swiss-Prot
Match: PSAD_GUITH (Photosystem I reaction center subunit II OS=Guillardia theta GN=psaD PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.909e-25
Identity = 57/88 (64.77%), Postives = 68/88 (77.27%), Query Frame = 2
Query:  212 LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIK----YQFYPS 463
            L+   PSP F GSTGG LR A+ EE Y ITW SPKEQ+FEMPTGGAAIMR+G NLL LARKEQCLALGT++++ +KI     Y+ +PS
Sbjct:    5 LNLQIPSPTFEGSTGGWLRAAETEEKYAITWTSPKEQVFEMPTGGAAIMRKGENLLYLARKEQCLALGTQVKTSFKITDYKIYRIFPS 92          
BLAST of EY686123 vs. ExPASy Swiss-Prot
Match: PSAD_CYACA (Photosystem I reaction center subunit II OS=Cyanidium caldarium GN=psaD PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.710e-19
Identity = 48/88 (54.55%), Postives = 61/88 (69.32%), Query Frame = 2
Query:  212 LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIK----YQFYPS 463
            L+   PSP F G+TGG LR + +EE Y ITW S  E IFE+PTGG A M+ G NLL LA+KEQCLALG +L+ K+KI     Y+ +P+
Sbjct:    5 LNLKMPSPEFYGNTGGWLRSSDIEEKYAITWSSKNEDIFEIPTGGVAKMKAGDNLLYLAKKEQCLALGNQLKIKFKILNFKIYRIFPN 92          
The following BLAST results are available for this feature:
BLAST of EY686123 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
PSAD_SYNEN1.238e-2861.73Photosystem I reaction center subunit II OS=Synech... [more]
PSAD_ANAVT2.937e-2763.64Photosystem I reaction center subunit II OS=Anabae... [more]
PSAD_FREDI2.422e-2664.94Photosystem I reaction center subunit II OS=Fremye... [more]
PSAD_ANASP2.422e-2663.64Photosystem I reaction center subunit II OS=Anabae... [more]
PSAD_GUITH5.909e-2564.77Photosystem I reaction center subunit II OS=Guilla... [more]
PSAD_CYACA3.710e-1954.55Photosystem I reaction center subunit II OS=Cyanid... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-034-H02-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY686123 ID=EY686123; Name=EY686123; organism=Citrus sinensis; type=EST; length=811bp
AATGGCCATGGCCGCAACAACTCAAGCCTCTCTCTTCGCACCGGCCAACT
TCTCCACCACCAAATCCTCTGCGCCGTGGAAGCAATCATCATCATTTTCA
GTAAGGCCACTAAAACATAATGCCCCACGTACCAACACCATCAAGGCCAT
GGCTGAGGGAAAAACAGAGACACCCACAAAAGAGGCTCCGGTGGGCTTCA
CCCCACCAGAACTGGACCCCAACACCCCATCTCCGATCTTCGGAGGCAGC
ACCGGCGGGCTGCTGCGGAAGGCTCAGGTGGAAGAGTTTTATGTGATCAC
ATGGGAGTCTCCTAAGGAGCAAATATTTGAAATGCCCACTGGGGGTGCGG
CCATTATGAGAGAAGGTCCGAATTTGCTGAAGCTGGCTAGGAAAGAGCAG
TGCTTGGCTCTGGGGACAAGGCTGAGGTCCAAGTACAAGATTAAGTACCA
GTTTTACCCGAGTGTTTCCCAATGGAGAGGTTCAGTATTTGCATCCCCAA
GATGGTGTTTATCCTGACAAAGTGCACCCCGAAACGGAAGGAGTTGGACA
AAAATAAAGGCCTATTGGCAACAATGTAAGACATATAGAGGCCAAACTAC
AAGGAGGCAAGGAGACTAACTGGAAACGAAAATCGAAACCAGAAAAGCGA
ACCCAACAGGAAGAAATGGGAACCAATGGCAAGATCCTCAGTGGAAGCCA
AGCAGGGGCGAGGGGACACACAACATTGAAGAAAGCCCACAATAAACGAA
CACAGAAGCATAAAACAAGAAACAGCCCACAGAGCTAAAAAAAAGAAAGA
AGAACAAGAAA
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