EY710624 | Citrus Genome Database

Overview


Name	EY710624
Unique Name	EY710624
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	945

Libraries


Library Name	Type
Sweet orange fruit, development stadium (2 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY710624 vs. ExPASy Swiss-Prot
Match: GL83_ORYSJ (Germin-like protein 8-3 OS=Oryza sativa subsp. japonica GN=GER2 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.499e-24
Identity = 52/98 (53.06%), Postives = 62/98 (63.27%), Query Frame = 1

Query:  115 DPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSG-LGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASENL 405
            DP  LQD CVA  D    V VNG  CK+P    ++DFF +     P NT N++G + T+ NV   PGLNTLGIS  RIDYAP G  PPH+HPRA+E L
Sbjct:   25 DPSPLQDFCVA--DMASPVRVNGFPCKNPMNVTSDDFFNAAKFDMPRNTMNKVGSNVTNLNVINFPGLNTLGISLARIDYAPMGVNPPHVHPRATELL 120

HSP 2 Score: 38.5058 bits (88), Expect = 2.499e-24
Identity = 20/46 (43.48%), Postives = 27/46 (58.70%), Query Frame = 2

Query:  386 PVPAKIFLVLEGTLYVGFCDIKPTE*HTHRQKFLNKGDVFVIPQGL 523
            P   ++  VLEGTLYVGF    P    +   K ++KGDVFV P+ +
Sbjct:  114 PRATELLTVLEGTLYVGFVTSNPNRLFS---KVVHKGDVFVFPKAM 156

[Close]

BLAST of EY710624 vs. ExPASy Swiss-Prot
Match: GL122_ORYSJ (Germin-like protein 12-2 OS=Oryza sativa subsp. japonica GN=Os12g0154800 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.251e-24
Identity = 53/100 (53.00%), Postives = 63/100 (63.00%), Query Frame = 1

Query:  112 TDPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSG-LGKPGNTA-NRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASENL 405
            +DP  LQD CVA  D    V VNG  CKD K    +DFF +  L KP +T  ++ G + T  NV ++ GLNTLGIS  RIDYAP GQ PPH HPRA+E L
Sbjct:   23 SDPSPLQDFCVA--DRNSPVHVNGFPCKDAKDVNVDDFFLAANLDKPMDTTKSKAGSNVTLINVMKLAGLNTLGISMARIDYAPKGQNPPHTHPRATEIL 120

HSP 2 Score: 42.743 bits (99), Expect = 3.251e-24
Identity = 25/47 (53.19%), Postives = 26/47 (55.32%), Query Frame = 2

Query:  386 PVPAKIFLVLEGTLYVGFCDIKPTE*HTHR-QKFLNKGDVFVIPQGL 523
            P   +I  VLEGTLYVGF              K LNKGDVFV PQGL
Sbjct:  114 PRATEILTVLEGTLYVGFVTSNQANGENKLFTKTLNKGDVFVFPQGL 160

[Close]

BLAST of EY710624 vs. ExPASy Swiss-Prot
Match: GL84_ORYSJ (Germin-like protein 8-4 OS=Oryza sativa subsp. japonica GN=GER1 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.253e-24
Identity = 53/98 (54.08%), Postives = 63/98 (64.29%), Query Frame = 1

Query:  115 DPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSG-LGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASENL 405
            DP  LQD CVA  D K  V VNG  CK+P    ++DFF +     P +T N++G + T+ NV   PGLNTLGIS  RIDYAP G  PPHIHPRA+E L
Sbjct:   25 DPSPLQDFCVA--DMKSPVRVNGFPCKNPMEVNSDDFFNAAKFDMPRSTMNKVGSNVTNLNVLNFPGLNTLGISLARIDYAPLGVNPPHIHPRATELL 120

HSP 2 Score: 36.965 bits (84), Expect = 3.253e-24
Identity = 19/46 (41.30%), Postives = 26/46 (56.52%), Query Frame = 2

Query:  386 PVPAKIFLVLEGTLYVGFCDIKPTE*HTHRQKFLNKGDVFVIPQGL 523
            P   ++  VLEGTLYVGF    P    +   K ++KGD FV P+ +
Sbjct:  114 PRATELLTVLEGTLYVGFVTSNPNRLFS---KVVHKGDTFVFPKAM 156

[Close]

BLAST of EY710624 vs. ExPASy Swiss-Prot
Match: GL32_ORYSJ (Putative germin-like protein 3-2 OS=Oryza sativa subsp. japonica GN=Os03g0651800 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 7.171e-24
Identity = 52/96 (54.17%), Postives = 62/96 (64.58%), Query Frame = 1

Query:  115 DPGHLQDVCVAINDPKDGVF-VNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASE 399
            DP  LQDVCVA      G   +NG  CK  +   A DFFF GL   GNT N +G   T A+VE++PGLNT+G+S  RIDYAP+G  PPH HPRA+E
Sbjct:   24 DPDMLQDVCVADYKSLRGPLRLNGIPCKRLENVTANDFFFDGLTNAGNTTNAVGSLVTAASVERLPGLNTMGVSMARIDYAPWGLSPPHTHPRATE 119

HSP 2 Score: 33.8834 bits (76), Expect = 7.171e-24
Identity = 25/74 (33.78%), Postives = 37/74 (50.00%), Query Frame = 2

Query:  386 PVPAKIFLVLEGTLYVGFCDIKPTE*HTHRQKFLNKGDVFVIPQGLNSLPIQHLEKTNGTCHILVL---TSQIP 598
            P   +I  V EGTL VGF     T  +    + ++KG+VFV P+GL      H ++ +G    L +    SQ+P
Sbjct:  115 PRATEIMFVAEGTLDVGFV----TTANKLFTRTVSKGEVFVFPRGL-----VHFQRNSGNTSALAIAAFNSQLP 179

[Close]

BLAST of EY710624 vs. ExPASy Swiss-Prot
Match: GL11_ORYSJ (Germin-like protein 1-1 OS=Oryza sativa subsp. japonica GN=GER4 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.215e-23
Identity = 55/95 (57.89%), Postives = 63/95 (66.32%), Query Frame = 1

Query:  115 DPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASE 399
            DP  LQDVCVA  D    V +NG  CK      A+DFFF+GL  PGNT N  G + T ANV+  PG+NTLG+S  RIDYAP GQ PPH HPRA+E
Sbjct:   26 DPDMLQDVCVA--DLASPVKLNGFPCKAN--VTADDFFFAGLKNPGNTNNPAGSNVTAANVQSFPGVNTLGVSMARIDYAPGGQNPPHTHPRATE 116

HSP 2 Score: 29.6462 bits (65), Expect = 1.215e-23
Identity = 19/46 (41.30%), Postives = 24/46 (52.17%), Query Frame = 2

Query:  386 PVPAKIFLVLEGTLYVGFCDIKPTE*HTHRQKFLNKGDVFVIPQGL 523
            P   +I  VLEG L VGF     T  +    K +  G+VFV P+GL
Sbjct:  112 PRATEIIFVLEGVLEVGFI----TTANKLFTKTVTAGEVFVFPRGL 153

[Close]

BLAST of EY710624 vs. ExPASy Swiss-Prot
Match: GL121_ORYSJ (Germin-like protein 12-1 OS=Oryza sativa subsp. japonica GN=Os12g0154700 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.055e-23
Identity = 53/99 (53.54%), Postives = 62/99 (62.63%), Query Frame = 1

Query:  115 DPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFF-SGLGKPGNTA-NRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASENL 405
            DP  LQD CVA  D    V VNG  CKD K    +DFF  + L KP +T  ++ G + T  NV ++ GLNTLGIS  RIDYAP GQ PPH HPRA+E L
Sbjct:   24 DPSPLQDFCVA--DRNSPVRVNGFPCKDAKDVNVDDFFLEANLDKPMDTTKSKAGSNVTLINVMKLTGLNTLGISMARIDYAPKGQNPPHTHPRATEIL 120

HSP 2 Score: 41.2022 bits (95), Expect = 2.055e-23
Identity = 24/47 (51.06%), Postives = 25/47 (53.19%), Query Frame = 2

Query:  386 PVPAKIFLVLEGTLYVGFCDIKPTE*HTHR-QKFLNKGDVFVIPQGL 523
            P   +I  V EGTLYVGF              K LNKGDVFV PQGL
Sbjct:  114 PRATEILTVFEGTLYVGFVTSNQANGENKLFTKTLNKGDVFVFPQGL 160

[Close]

BLAST of EY710624 vs. ExPASy Swiss-Prot
Match: GL22_ARATH (Germin-like protein subfamily 2 member 2 OS=Arabidopsis thaliana GN=At1g02335 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.677e-23
Identity = 50/95 (52.63%), Postives = 60/95 (63.16%), Query Frame = 1

Query:  115 DPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASE 399
            DP  LQD+CVA  D   G  +NG  CK+       DFFF+G+ KP    + +G   T ANVE+IPGLNTL +S  RIDYAP G  PPH HPRA+E
Sbjct:   24 DPDALQDLCVA--DKSHGTKLNGFPCKETLNITESDFFFAGISKPAVINSTMGSAVTGANVEKIPGLNTLSVSLARIDYAPGGLNPPHTHPRATE 116

HSP 2 Score: 33.4982 bits (75), Expect = 2.677e-23
Identity = 27/74 (36.49%), Postives = 36/74 (48.65%), Query Frame = 2

Query:  386 PVPAKIFLVLEGTLYVGFCDIKPTE*HTHRQKFLNKGDVFVIPQGLNSLPIQHLEKTNGTCHILVLT---SQIP 598
            P   ++  VLEG L VGF     T  +    K +  G+VFV P+GL      H +K NG     VL+   SQ+P
Sbjct:  112 PRATEVVYVLEGELEVGFI----TTANKLFTKTIKIGEVFVFPRGL-----VHFQKNNGKSPASVLSAFNSQLP 176

[Close]

BLAST of EY710624 vs. ExPASy Swiss-Prot
Match: GL124_ORYSJ (Putative germin-like protein 12-4 OS=Oryza sativa subsp. japonica GN=Os12g0155000 PE=3 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 4.528e-23
Identity = 52/100 (52.00%), Postives = 62/100 (62.00%), Query Frame = 1

Query:  112 TDPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSG-LGKPGNTA-NRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASENL 405
            +DP  LQD CVA  D    V VNG  CKD K    +DFF +  L KP +T  ++ G + T  NV ++ GLNTL IS  RIDYAP GQ PPH HPRA+E L
Sbjct:   23 SDPSPLQDFCVA--DKHSPVRVNGLPCKDAKDVSVDDFFLAANLDKPMDTTKSKAGSNVTLINVMKLAGLNTLSISMARIDYAPKGQNPPHTHPRATEIL 120

HSP 2 Score: 41.9726 bits (97), Expect = 4.528e-23
Identity = 26/51 (50.98%), Postives = 30/51 (58.82%), Query Frame = 2

Query:  386 PVPAKIFLVLEGTLYVGFCDIKPTE*HTHRQ-----KFLNKGDVFVIPQGL 523
            P   +I  VLEG+LYVGF     T    +R+     K LNKGDVFV PQGL
Sbjct:  114 PRATEILTVLEGSLYVGFV----TSNQANRENKLFTKTLNKGDVFVFPQGL 160

[Close]

BLAST of EY710624 vs. ExPASy Swiss-Prot
Match: GL123_ORYSJ (Putative germin-like protein 12-3 OS=Oryza sativa subsp. japonica GN=Os12g0154900 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.891e-23
Identity = 53/100 (53.00%), Postives = 64/100 (64.00%), Query Frame = 1

Query:  112 TDPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSG-LGKPGN-TANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASENL 405
            +DP  LQD+CVA  D    V VNG  CKD K    +DFF +  L KP + T ++ G + T  NV ++ GLNTLGIS  RIDYAP GQ PPH HPRA+E L
Sbjct:   23 SDPSPLQDLCVA--DKNSPVRVNGFPCKDAKDVSVDDFFLAANLDKPMDITKSKAGSNVTLINVMKLAGLNTLGISMARIDYAPKGQNPPHTHPRATEIL 120

HSP 2 Score: 38.891 bits (89), Expect = 5.891e-23
Identity = 22/47 (46.81%), Postives = 26/47 (55.32%), Query Frame = 2

Query:  386 PVPAKIFLVLEGTLYVGFCDIKPTE*HTHR-QKFLNKGDVFVIPQGL 523
            P   +I  V+EG+LYVGF              K LNKGDVFV P+GL
Sbjct:  114 PRATEILSVIEGSLYVGFVTSNQANGENKLFTKTLNKGDVFVFPEGL 160

[Close]

BLAST of EY710624 vs. ExPASy Swiss-Prot
Match: NEC1_NICPL (Nectarin-1 OS=Nicotiana plumbaginifolia GN=NEC1 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.689e-22
Identity = 54/95 (56.84%), Postives = 58/95 (61.05%), Query Frame = 1

Query:  115 DPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASE 399
            D   LQDVCVA  D    V VNG  CK      A DF    + KPG T N+ G   T ANVEQ+PGLNTLG+S  RIDYAP G  PPH HPRASE
Sbjct:   34 DEDMLQDVCVA--DLHSKVKVNGFPCKTN--FTAADFSSFAISKPGATNNKFGSKVTTANVEQVPGLNTLGVSLARIDYAPGGINPPHTHPRASE 124

HSP 2 Score: 35.039 bits (79), Expect = 1.689e-22
Identity = 26/74 (35.14%), Postives = 38/74 (51.35%), Query Frame = 2

Query:  386 PVPAKIFLVLEGTLYVGFCDIKPTE*HTHRQKFLNKGDVFVIPQGLNSLPIQHLEKTNGTCHILVLT---SQIP 598
            P  +++  V+EG L VGF     T  +    K + KG+VFV P+GL      H +K NG     V++   SQ+P
Sbjct:  120 PRASEMVFVMEGELDVGFI----TTANVLVSKQITKGEVFVFPRGL-----VHFQKNNGKIPAAVVSAFNSQLP 184

The following BLAST results are available for this feature:

BLAST of EY710624 vs. ExPASy Swiss-Prot

BLAST of EY710624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80


Match Name	E-value	Identity	Description
GL83_ORYSJ	2.499e-24	53.06	Germin-like protein 8-3 OS=Oryza sativa subsp. jap...	[more]
GL122_ORYSJ	3.251e-24	53.00	Germin-like protein 12-2 OS=Oryza sativa subsp. ja...	[more]
GL84_ORYSJ	3.253e-24	54.08	Germin-like protein 8-4 OS=Oryza sativa subsp. jap...	[more]
GL32_ORYSJ	7.171e-24	54.17	Putative germin-like protein 3-2 OS=Oryza sativa s...	[more]
GL11_ORYSJ	1.215e-23	57.89	Germin-like protein 1-1 OS=Oryza sativa subsp. jap...	[more]
GL121_ORYSJ	2.055e-23	53.54	Germin-like protein 12-1 OS=Oryza sativa subsp. ja...	[more]
GL22_ARATH	2.677e-23	52.63	Germin-like protein subfamily 2 member 2 OS=Arabid...	[more]
GL124_ORYSJ	4.528e-23	52.00	Putative germin-like protein 12-4 OS=Oryza sativa ...	[more]
GL123_ORYSJ	5.891e-23	53.00	Putative germin-like protein 12-3 OS=Oryza sativa ...	[more]
NEC1_NICPL	1.689e-22	56.84	Nectarin-1 OS=Nicotiana plumbaginifolia GN=NEC1 PE...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-701-083-C10-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY710624 ID=EY710624; Name=EY710624; organism=Citrus sinensis; type=EST; length=945bp
ACTTGATTAAAGTTTGAGATAGGCACATCCTGTGACTTAATCACCATGAA
GGTAATTCAATTTCTTATAGGTTTTGCCCTCTTGGCTTTGGCTTCTTCTT
TGGCCTCTGCCACTGACCCTGGCCATCTTCAAGATGTCTGTGTAGCCATC
AATGACCCCAAGGATGGTGTGTTTGTGAATGGGAAGTTCTGCAAGGACCC
CAAGCTTGCGAGAGCAGAAGATTTCTTCTTCTCAGGGCTAGGCAAGCCTG
GAAACACAGCAAATCGACTTGGTGTTGATGAAACAGATGCAAATGTTGAG
CAAATTCCAGGACTCAACACCCTTGGCATATCAGCATTCCGTATTGACTA
TGCACCATATGGCCAAAGGCCACCTCACATTCACCCCCGTGCCAGCGAAA
ATCTTCTTAGTCCTGGAAGGAACTCTTTATGTCGGTTTTTGTGACATCAA
ACCAACTGAATAACACACTCATCGCCAAAAATTTCTAAATAAAGGAGATG
TTTTTGTGATTCCCCAAGGTTTGAATTCCCTTCCAATTCAACATTTGGAA
AAAACAAATGGCACCTGCCATATTCTGGTTCTAACCAGCCAAATTCCCCG
GTGAAATTTACCATAACCAAAACAGACTTTAAGAACCAAAACTTCAATAA
AACAAAAATTTTAGATGGAAAGGCAATTCCATTTCGAGCCAAAAGACTAG
GAAAAGGCAATCAAAAAAAATAGAATTAAGAAAACTTAGAGACTAAGGAT
TAACTAGAATTAAGTAAAACAGGCACTCCACAACAAACGAAAAAAAAAAT
ACAAATAACATCACACGCGTGAAATGAAAATCATAAATAGGGAAACGGAC
AAAAGCAGAGATACACTGAGCATAACACAGACGAACTCGACAATAACGTG
CCGGAGGGACGAAGGGGTAGAAAGAATGCAGAGTAATGTGAGAAA