EY685713

Overview
NameEY685713
Unique NameEY685713
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length973
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY685713 vs. ExPASy Swiss-Prot
Match: MMSB_MYCTU (Probable 3-hydroxyisobutyrate dehydrogenase OS=Mycobacterium tuberculosis GN=mmsB PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 7.608e-27
Identity = 56/135 (41.48%), Postives = 81/135 (60.00%), Query Frame = 2
Query:    2 HASDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFA 406
            HA       + LDAPVSGGV  A A TL FMVGG E   + A+P+   M    I+CG AG G AAK+CNN+ +AV  + ++EA  L + LG+SA +L  ++  ++  CW+  +  PVPG +   PA+ ++  GF+
Sbjct:  103 HALAESHGMLQLDAPVSGGVKGAAAATLAFMVGGDESTLRRARPVLEPMAGKIIHCGAAGAGQAAKVCNNMVLAVQQIAIAEAFVLAEKLGLSAQSLFDVITGATGNCWAVHTNCPVPGPVPTSPANNDFKPGFS 237          

HSP 2 Score: 23.483 bits (49), Expect = 7.608e-27
Identity = 11/29 (37.93%), Postives = 14/29 (48.28%), Query Frame = 1
Query:  415 LMAKDLNLALASPKEVAVNCPLTSHGQHV 501
            LM KDL LA+ +        PL SH   +
Sbjct:  240 LMNKDLGLAMDAVAATGATAPLGSHAADI 268          
BLAST of EY685713 vs. ExPASy Swiss-Prot
Match: MMSB_MYCBO (Probable 3-hydroxyisobutyrate dehydrogenase OS=Mycobacterium bovis GN=mmsB PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 7.608e-27
Identity = 56/135 (41.48%), Postives = 81/135 (60.00%), Query Frame = 2
Query:    2 HASDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFA 406
            HA       + LDAPVSGGV  A A TL FMVGG E   + A+P+   M    I+CG AG G AAK+CNN+ +AV  + ++EA  L + LG+SA +L  ++  ++  CW+  +  PVPG +   PA+ ++  GF+
Sbjct:  103 HALAESHGMLQLDAPVSGGVKGAAAATLAFMVGGDESTLRRARPVLEPMAGKIIHCGAAGAGQAAKVCNNMVLAVQQIAIAEAFVLAEKLGLSAQSLFDVITGATGNCWAVHTNCPVPGPVPTSPANNDFKPGFS 237          

HSP 2 Score: 23.483 bits (49), Expect = 7.608e-27
Identity = 11/29 (37.93%), Postives = 14/29 (48.28%), Query Frame = 1
Query:  415 LMAKDLNLALASPKEVAVNCPLTSHGQHV 501
            LM KDL LA+ +        PL SH   +
Sbjct:  240 LMNKDLGLAMDAVAATGATAPLGSHAADI 268          
BLAST of EY685713 vs. ExPASy Swiss-Prot
Match: YKWC_BACSU (Uncharacterized oxidoreductase ykwC OS=Bacillus subtilis GN=ykwC PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.761e-19
Identity = 49/125 (39.20%), Postives = 74/125 (59.20%), Query Frame = 2
Query:   35 LDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFAI 409
            LDAPVSGG + A+ GTL  MVGG ++A++A  P+F  MG+N  Y G AG+G   K+CN + +A  M+GV+EA+   Q  G+    + K + + +A  WS    N  P +++G     N+  GF +
Sbjct:  118 LDAPVSGGDIGAQNGTLAIMVGGEKEAFEACMPIFSLMGENIQYQGPAGSGQHTKMCNQIAIAAGMIGVAEAMAYAQKSGLEPENVLKSITTGAAGSWSLS--NLAPRMLQG-----NFEPGFYV 235          
BLAST of EY685713 vs. ExPASy Swiss-Prot
Match: Y229_SYNY3 (Uncharacterized oxidoreductase slr0229 OS=Synechocystis sp. (strain PCC 6803) GN=slr0229 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 7.341e-15
Identity = 38/105 (36.19%), Postives = 61/105 (58.10%), Query Frame = 2
Query:   35 LDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNP 349
            LDAPV+GG + A  GTLT MVGG    ++ A P+  S+G+  ++CG +G+G A K+CN +   +  +  +EA+ L + LGI+   +     S +A  W+  +  P
Sbjct:  121 LDAPVTGGDVGAINGTLTIMVGGDISDFEEALPVLKSIGEKIVHCGPSGSGQAVKLCNQVLCGIHAIAAAEAIQLSEQLGIAPELVIDTCGSGAAGSWALTNLAP 225          
BLAST of EY685713 vs. ExPASy Swiss-Prot
Match: GLXR_ECOLI (2-hydroxy-3-oxopropionate reductase OS=Escherichia coli (strain K12) GN=glxR PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.361e-13
Identity = 37/80 (46.25%), Postives = 49/80 (61.25%), Query Frame = 2
Query:   35 LDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLG 274
            LDAPVSGG + A  GTL+ MVGG E  ++  KPLF  +GKN    GG G+G   K+ N + +A+++  VSEAL      G
Sbjct:  115 LDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAG 194          
The following BLAST results are available for this feature:
BLAST of EY685713 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
MMSB_MYCTU7.608e-2741.48Probable 3-hydroxyisobutyrate dehydrogenase OS=Myc... [more]
MMSB_MYCBO7.608e-2741.48Probable 3-hydroxyisobutyrate dehydrogenase OS=Myc... [more]
YKWC_BACSU3.761e-1939.20Uncharacterized oxidoreductase ykwC OS=Bacillus su... [more]
Y229_SYNY37.341e-1536.19Uncharacterized oxidoreductase slr0229 OS=Synechoc... [more]
GLXR_ECOLI2.361e-1346.252-hydroxy-3-oxopropionate reductase OS=Escherichia... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-025-C04-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685713 ID=EY685713; Name=EY685713; organism=Citrus sinensis; type=EST; length=973bp
CCACGCGTCCGATTCATGGGAAAACCCTGTCATGTTGGATGCTCCCGTCT
CTGGGGGTGTTCTTGCTGCAGAGGCTGGTACACTAACTTTCATGGTTGGT
GGCTCTGAGGATGCATATCAGGCTGCAAAACCCTTGTTCCTCTCAATGGG
GAAAAACACAATATACTGTGGTGGAGCAGGAAATGGGGCGGCAGCAAAAA
TTTGCAATAACTTGACAATGGCTGTGAGCATGCTTGGGGTGTCAGAAGCC
CTGACACTTGGTCAGTCGCTAGGAATATCTGCTAGTACTCTAACAAAGAT
ATTGAACTCTTCAAGTGCTCGCTGTTGGAGTAGTGACAGTTATAATCCTG
TTCCTGGGGTGATGGAAGGGGTGCCGGCTTCAAGGAATTATGGTGGTGGG
TTTGCAATCTAAGGCTCATGGCCAAAGACTTGAACCTTGCTTTGGCATCA
CCAAAAGAGGTTGCCGTCAATTGCCCGTTAACATCACACGGCCAACACGT
AATACGCGAAGATCTGTGGAAAAGGACATGAATCCAAGCGACTTCTCCCT
GCGAATTCCAAAATAATAATGAAAGCACGGAAAAATTTTAACTTCAAAAT
TCAGGACCATAGCTATTACCAATCCCCTACGGCATACCCCTCCAAAAGCC
CCGGCTATTCCATTACACATTACCTCCCCACACGGACCGCCCCTTTTACC
CCGATCACCAGTCCCAATACCAACACCCGTCATCACCTCCCCCTAAGTTC
CCCCCCACGACAACAAGACGAACAACACATAGCAGACCAAACAACTGGCA
GGACAACCAACCACAACCGAACGCGCCTTACCTACCGCCACAACCAAACC
AAACCACACAACAACCAGGACGCCCCCAACCACACCCCAGATGAAAAGGA
GGGGCGGAGGACGGATGACGGACCGACACAACAACACAAGAGACGACGGG
CGCAAAGATAAGAGAGACTCCCC
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