EY685707

Overview
NameEY685707
Unique NameEY685707
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY685707 vs. ExPASy Swiss-Prot
Match: RL27_VIBCH (50S ribosomal protein L27 OS=Vibrio cholerae GN=rpmA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.782e-24
Identity = 54/85 (63.53%), Postives = 66/85 (77.65%), Query Frame = 3
Query:  216 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKE 470
            A KK  GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G  VG+GKDHTL+AL +G+VKFE    + RK+V +E  E
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGTNVGIGKDHTLFALSDGKVKFEVKGPNNRKFVSIETAE 86          
BLAST of EY685707 vs. ExPASy Swiss-Prot
Match: RL27_VIBC3 (50S ribosomal protein L27 OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=rpmA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.782e-24
Identity = 54/85 (63.53%), Postives = 66/85 (77.65%), Query Frame = 3
Query:  216 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKE 470
            A KK  GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G  VG+GKDHTL+AL +G+VKFE    + RK+V +E  E
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGTNVGIGKDHTLFALSDGKVKFEVKGPNNRKFVSIETAE 86          
BLAST of EY685707 vs. ExPASy Swiss-Prot
Match: RL27_VIBFM (50S ribosomal protein L27 OS=Vibrio fischeri (strain MJ11) GN=rpmA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.328e-24
Identity = 54/82 (65.85%), Postives = 64/82 (78.05%), Query Frame = 3
Query:  216 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 461
            A KK  GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G  VG+GKDHTL+AL EG+VKFE      RK+V +E
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGTNVGIGKDHTLFALSEGKVKFEVKGPKNRKFVSIE 83          
BLAST of EY685707 vs. ExPASy Swiss-Prot
Match: RL27_VIBF1 (50S ribosomal protein L27 OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=rpmA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.328e-24
Identity = 54/82 (65.85%), Postives = 64/82 (78.05%), Query Frame = 3
Query:  216 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 461
            A KK  GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G  VG+GKDHTL+AL EG+VKFE      RK+V +E
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGTNVGIGKDHTLFALSEGKVKFEVKGPKNRKFVSIE 83          
BLAST of EY685707 vs. ExPASy Swiss-Prot
Match: RL27_ALTMD (50S ribosomal protein L27 OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=rpmA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.328e-24
Identity = 53/81 (65.43%), Postives = 65/81 (80.25%), Query Frame = 3
Query:  216 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHV 458
            A KK  GSTKNGRDS+ K LGVK+FGGE V+ GNIIVRQRGTRFH GD +G+GKDHTL+ALK+G+V+F+      RK+V +
Sbjct:    2 AHKKAGGSTKNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTRFHAGDNMGIGKDHTLFALKDGKVQFDVKGPKNRKFVSI 82          
BLAST of EY685707 vs. ExPASy Swiss-Prot
Match: RL27_VIBVY (50S ribosomal protein L27 OS=Vibrio vulnificus (strain YJ016) GN=rpmA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.970e-24
Identity = 53/82 (64.63%), Postives = 65/82 (79.27%), Query Frame = 3
Query:  216 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 461
            A KK  GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G+ VG+GKDHTL+AL +G+VKFE      RK+V +E
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTQFHAGNNVGLGKDHTLFALTDGKVKFEVKGPKNRKFVSIE 83          
BLAST of EY685707 vs. ExPASy Swiss-Prot
Match: RL27_VIBVU (50S ribosomal protein L27 OS=Vibrio vulnificus GN=rpmA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.970e-24
Identity = 53/82 (64.63%), Postives = 65/82 (79.27%), Query Frame = 3
Query:  216 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 461
            A KK  GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G+ VG+GKDHTL+AL +G+VKFE      RK+V +E
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTQFHAGNNVGLGKDHTLFALTDGKVKFEVKGPKNRKFVSIE 83          
BLAST of EY685707 vs. ExPASy Swiss-Prot
Match: RL27_SERP5 (50S ribosomal protein L27 OS=Serratia proteamaculans (strain 568) GN=rpmA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.970e-24
Identity = 53/82 (64.63%), Postives = 65/82 (79.27%), Query Frame = 3
Query:  216 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 461
            A KK  GST+NGRDS+ K LGVK+FGGE V+ G+IIVRQRGT+FH G  VG GKDHTL+ALK+G+VKFE    S RK++ +E
Sbjct:    2 AHKKAGGSTRNGRDSEAKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGTNVGCGKDHTLFALKDGKVKFEVKGPSNRKFISIE 83          
BLAST of EY685707 vs. ExPASy Swiss-Prot
Match: RL27_BARHE (50S ribosomal protein L27 OS=Bartonella henselae GN=rpmA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.970e-24
Identity = 55/83 (66.27%), Postives = 66/83 (79.52%), Query Frame = 3
Query:  216 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 464
            A KK  GS++NGRDS+ K LGVKKFGGE VI GNIIVRQRGTR+HPGD VG+GKDHTL+AL +G V F++ K + R +V V P
Sbjct:    2 AHKKAGGSSRNGRDSESKRLGVKKFGGEAVIAGNIIVRQRGTRWHPGDNVGIGKDHTLFALSKGMVSFQR-KANNRSYVSVIP 83          
BLAST of EY685707 vs. ExPASy Swiss-Prot
Match: RL27_ALISL (50S ribosomal protein L27 OS=Aliivibrio salmonicida (strain LFI1238) GN=rpmA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.186e-24
Identity = 53/82 (64.63%), Postives = 64/82 (78.05%), Query Frame = 3
Query:  216 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 461
            A KK  GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G  VG+GKDHTL+AL EG+VKFE      RK+V ++
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGTNVGIGKDHTLFALSEGKVKFEVKGPKNRKFVSID 83          
The following BLAST results are available for this feature:
BLAST of EY685707 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL27_VIBCH1.782e-2463.5350S ribosomal protein L27 OS=Vibrio cholerae GN=rp... [more]
RL27_VIBC31.782e-2463.5350S ribosomal protein L27 OS=Vibrio cholerae serot... [more]
RL27_VIBFM2.328e-2465.8550S ribosomal protein L27 OS=Vibrio fischeri (stra... [more]
RL27_VIBF12.328e-2465.8550S ribosomal protein L27 OS=Vibrio fischeri (stra... [more]
RL27_ALTMD2.328e-2465.4350S ribosomal protein L27 OS=Alteromonas macleodii... [more]
RL27_VIBVY3.970e-2464.6350S ribosomal protein L27 OS=Vibrio vulnificus (st... [more]
RL27_VIBVU3.970e-2464.6350S ribosomal protein L27 OS=Vibrio vulnificus GN=... [more]
RL27_SERP53.970e-2464.6350S ribosomal protein L27 OS=Serratia proteamacula... [more]
RL27_BARHE3.970e-2466.2750S ribosomal protein L27 OS=Bartonella henselae G... [more]
RL27_ALISL5.186e-2464.6350S ribosomal protein L27 OS=Aliivibrio salmonicid... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-025-B07-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685707 ID=EY685707; Name=EY685707; organism=Citrus sinensis; type=EST; length=707bp
CCACGCGTCCGATCACCACATCGACAAACAATCACTTGAACTGAGGAACT
CGAATTGCATATTGAGAGGATAAATTACCAAAAATGAGCATGTTTAATTT
CGCAAATACGCTATGCAAGCGATTGAATGTGAAAGAACTGGTTAGTAATG
TTTCCGTATACGGCAGCGTCGCTGATGGATCTGCTGGTGGATTAAGCTTG
ATGTTTAGGCGTTGGGCTACCAAAAAGACGGCTGGATCAACCAAGAACGG
ACGTGACTCCAAACCTAAGAATCTTGGGGTGAAAAAATTCGGTGGTGAGA
GGGTGATACCTGGAAACATTATTGTTCGTCAGCGAGGAACACGCTTTCAT
CCTGGAGATTATGTAGGGATGGGCAAGGATCACACCCTTTATGCCCTTAA
GGAAGGACGTGTCAAATTTGAAAAACACAAGCTTAGCGGTCGCAAGTGGG
TGCATGTTGAACCCAAGGAAGGCCATGTGCTACATCCTCTATATGCAAAT
GCAACGGCAAATGCTTCTTCACCTCAGCTGGAGACGGCTGCATAAAACCC
CATTTTATTTGATTATTTAATCAAGCTACTCTTTTCTCTTTTTCTTCTTC
CTTTCTGGACAGAAACTGAAATAAATATGGGTTTTTACTGAAACTGTGTA
CCAGAATTGAATATAAATTTTCCTACTGTTTTTCCTTGTTTGAAAAAAAA
AAAAAAA
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